Olena June 2004

olena@lrde.epita.fr

7 participants
7 discussions

by Akim Demaille

Je crois que --with et --enable ne sont pas compris : Vaucanson et Olena tous deux doivent revoir leur configure.ac. --with : option sur un paquetage externe --enable : option interne du paquetage. Vcn: Optional Features: --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no) --enable-FEATURE[=ARG] include FEATURE [ARG=yes] --disable-dependency-tracking speeds up one-time build --enable-dependency-tracking do not reject slow dependency extractors --enable-shared[=PKGS] build shared libraries [default=yes] --enable-fast-install[=PKGS] optimize for fast installation [default=yes] --disable-libtool-lock avoid locking (might break parallel builds) --enable-xml Enable XML tests (need Xerces-C++ library >= 2.3) Optional Packages: --with-PACKAGE[=ARG] use PACKAGE [ARG=yes] --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no) ** --with-vcsn=DIR Include directory where Vaucanson is installed ** (optional) ** --without-vaucanswig disable building vaucanswig --with-pic try to use only PIC/non-PIC objects [default=use both] --with-gnu-ld assume the C compiler uses GNU ld [default=no] --with-xerces specify Xerces-C++ location Oln: Optional Features: --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no) --enable-FEATURE[=ARG] include FEATURE [ARG=yes] --disable-dependency-tracking speeds up one-time build --enable-dependency-tracking do not reject slow dependency extractors --disable-manpages-regen force disable regeneration of manual pages Optional Packages: --with-PACKAGE[=ARG] use PACKAGE [ARG=yes] --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no) ** --with-oln=DIR Include directory where Olena is installed (optional) --with-zlib[=DIR] using zlib (DIR = prefix for zlib installation) --with-fftw[=DIR] using fftw (DIR = prefix for fftw installation) ** --without-oln-testsuite disable building the olena's testsuite ** --with-oln-tests=<list> none,all,convert,convol,io,morpho,sanity,transforms ** --without-ntg-testsuite disable building the integre's testsuite ** --with-ntg-tests=<list> none,types ** --without-mlc-testsuite disable building the metalic's testsuite ** --with-mlc-tests=<list> none,array,main Doxygen is needed to build the doc ** --without-doc disable building the documentation ** --without-doc-ref disable building the Olena reference manuals ** --without-doc-dev disable building the Olena development manual ** --without-demo disable building the demonstration programs ** --without-tools disable building the run-time tools ** --without-utilities disable building the command-line utilities ** --without-morpho-utilities ** disable building the morpho utilities ** --without-swilena disable building the SWIG interface to Olena ** --without-pylena disable building the Python interface to Olena ??? Include path for Python.h ** --without-rblena disable building the Ruby interface to Olena ??? Include path for ruby.h Par ailleurs les lignes en ??? sont très étranges. ------------------------------------------------------------ 12.1 Working With External Software =================================== Some packages require, or can optionally use, other software packages that are already installed. The user can give `configure' command line options to specify which such external software to use. The options have one of these forms: --with-PACKAGE[=ARG] --without-PACKAGE For example, `--with-gnu-ld' means work with the GNU linker instead of some other linker. `--with-x' means work with The X Window System. The user can give an argument by following the package name with `=' and the argument. Giving an argument of `no' is for packages that are used by default; it says to _not_ use the package. An argument that is neither `yes' nor `no' could include a name or number of a version of the other package, to specify more precisely which other package this program is supposed to work with. If no argument is given, it defaults to `yes'. `--without-PACKAGE' is equivalent to `--with-PACKAGE=no'. `configure' scripts do not complain about `--with-PACKAGE' options that they do not support. This behavior permits configuring a source tree containing multiple packages with a top-level `configure' script when the packages support different options, without spurious error messages about options that some of the packages support. An unfortunate side effect is that option spelling errors are not diagnosed. No better approach to this problem has been suggested so far. For each external software package that may be used, `configure.ac' should call `AC_ARG_WITH' to detect whether the `configure' user asked to use it. Whether each package is used or not by default, and which arguments are valid, is up to you. ---------------------------------------------------------------------- 12.2 Choosing Package Options ============================= If a software package has optional compile-time features, the user can give `configure' command line options to specify whether to compile them. The options have one of these forms: --enable-FEATURE[=ARG] --disable-FEATURE These options allow users to choose which optional features to build and install. `--enable-FEATURE' options should never make a feature behave differently or cause one feature to replace another. They should only cause parts of the program to be built rather than left out. The user can give an argument by following the feature name with `=' and the argument. Giving an argument of `no' requests that the feature _not_ be made available. A feature with an argument looks like `--enable-debug=stabs'. If no argument is given, it defaults to `yes'. `--disable-FEATURE' is equivalent to `--enable-FEATURE=no'. `configure' scripts do not complain about `--enable-FEATURE' options that they do not support. This behavior permits configuring a source tree containing multiple packages with a top-level `configure' script when the packages support different options, without spurious error messages about options that some of the packages support. An unfortunate side effect is that option spelling errors are not diagnosed. No better approach to this problem has been suggested so far. For each optional feature, `configure.ac' should call `AC_ARG_ENABLE' to detect whether the `configure' user asked to include it. Whether each feature is included or not by default, and which arguments are valid, is up to you. ---------------------------------------------------------------------- Merci aux groupes de s'aligner sur le std, et de ne pas oublier, le cas échéant, de mettre à jour README. Oln: Remarquer que cette remarque est liée à une task que j'ai mise dans votre groupe, et qui n'a tjs pas de réponse...

19 years, 9 months

[Fwd: [isis-all] Programme Techno-Vision]

by Thierry GERAUD

on peut peut-être faire qqch ?

19 years, 9 months

lu dans epitech.*

by Thierry GERAUD

florent paganel wrote: > Bonjour a tous et a toutes! > > > > > Mercredi 16 juin, a 17h, le gerant de la societe Artenum vient sa > presenter societe et nous parler du devellopement des > logiciels/libraries libres dans les domaines scientifiques, entre autre... > > > Artenum est une petite societe ou tous les fondateurs sont biclasses en > informatique et physique/mathematiques. Ils ont une approche de > l'informatique tres ouverte et principalement oriente vers le calcul et > l'imagerie scientifique. Ils travaillent en collaboration avec des > organismes d'etat, des labos et industries, en collabortion avec des > equipes de chercheurs et d'informticiens a echelle interntionale. > > > C'est une equipe jeune et dynamique, qui se dit elle-meme "atypique", > parceque leur facon de voir l'informatique est differente. > > > Je sais que les tek1 conciderent avoir fini l'annee, que les tek2 sont > tres occupes et je ne parle mme ps des tek4 (bon courage). Seulement, ce > Mr vient expres pour nous de Hollande, de retour d'un seminaire pour le > logiciel libre la bas... La conference durera entre 1/2 heure et 1 heure! > > > Nous n'avons pas souvent l'occasion ni la chance de pouvoir parler avec > des chefs d'entreprise dans ces domaines. Je trouverais cela vraiment > dommage, autant pour l'ecole que pour nous, de ne pas venir accueillir > et remercier de sa presence cette personne. Surtout que cela ne vous > prendras que 1/2 heure ou 1heure. > > > J'espere que cette conference se passera bien et qu'il y en aura > d'autres, avec des entreprises que vous aimeriez bien "interviewer"! > cela ne tient qu'a vous :-) > > Merci d'avance a tous! > > -- > Florent paganel, tek1 >

19 years, 10 months

oln 10.192: convolution

by Simon Odou

Index: doc/ChangeLog from Simon Odou <simon(a)lrde.epita.fr> * ref/out/exdoc.config.in: Add -DHAVE_CONFIG_H and libs (for fft). Index: olena/ChangeLog from Simon Odou <simon(a)lrde.epita.fr> * oln/convol/convolution.hh: Move to ... * oln/convol/slow_convolution.hh: ... Here. Convolve two images (convolution between image and w_window does not make sense). * oln/transforms/fft.hh: Shift the DFT. * tests/convol/Makefile.am: Add lib for fft test. * tests/convol/tests/slow_sum_2d_1: Fix include. * tests/convol/tests/slow_sum_2d_2: Likewise. * tests/convol/tests/sobel_gradient: Likewise. * oln/makefile.src: Add slow_convolution.hh and fast_convolution.hh. * oln/convol/slow_gaussian.hh: Adapt to new kernel (image). * oln/convol/slow_gaussian.hxx: Use image to compute convolution (not w_window). * oln/convol/fast_convolution.hh: New. Use fft to convolute. * tests/convol/tests/fast_convol: New. Index: olena/oln/convol/slow_convolution.hh --- olena/oln/convol/convolution.hh Mon, 15 Mar 2004 17:40:54 +0100 van-vl_n (oln/f/39_convolutio 1.4.1.4.1.6.1.3 600) +++ olena/oln/convol/slow_convolution.hh Mon, 14 Jun 2004 06:05:43 +0200 odou_s (oln/f/39_convolutio 1.4.1.4.1.6.1.3 600) @@ -26,8 +26,8 @@ // Public License. -#ifndef OLENA_CONVOL_CONVOLUTION_HH__ -# define OLENA_CONVOL_CONVOLUTION_HH__ +#ifndef OLENA_CONVOL_SLOW_CONVOLUTION_HH__ +# define OLENA_CONVOL_SLOW_CONVOLUTION_HH__ # include <oln/basics.hh> # include <oln/basics2d.hh> @@ -50,11 +50,13 @@ ** ** \param DestValue Data type of the output image you want. ** \param I Exact type of the input image. - ** \param Win Exact type of the window. ** ** \arg input The image to process. ** \arg win The window to convolve with. ** + ** \deprecated This function is obsolete, prefer : + ** convolve(const abstract::non_vectorial_image< I >& input, + ** const abstract::image< J >& k) ** \todo FIXME: we must always specify DestValue. */ template<class DestValue, class I, class Win> @@ -80,6 +82,58 @@ } /*! + ** \brief Perform a convolution of two images. + ** + ** \param DestValue Data type of the output image you want. + ** \param I Exact type of the input image. + ** \param J Exact type of the input image (convolution kernel). + ** + ** \arg input The image to process. + ** \arg k The kernel to convolve with. + ** + ** \todo FIXME: we must always specify DestValue. + */ + template<class DestValue, class I, class J> + typename mute<I, DestValue>::ret + convolve(const abstract::non_vectorial_image< I >& input, + const abstract::image< J >& k) + { + mlc::eq<I::dim, J::dim>::ensure(); + + typename mute<I, DestValue>::ret output(input.size()); + + // Compute Delta. + // \todo FIXME: should be in the image hierarchy. + coord delta = 0; + for (unsigned i = 0; i < J::dim; i++) + if (k.size().nth(i) > delta) + delta = k.size().nth(i); + input.border_adapt_copy(delta); + + // Computer center of the kernel. + // \todo FIXME: should be in the image hierarchy. + oln_iter_type(I) p_im(input); + oln_iter_type(I) p_k(k); + oln_point_type(I) center; + unsigned i_center = 0; + unsigned real_center = k.npoints() % 2 ? k.npoints() / 2 + 1 : + k.npoints() / 2; + for_all(p_k) + if (++i_center == real_center) + center = p_k; + + for_all(p_im) + { + DestValue sum = ntg_zero_val(DestValue); + for_all(p_k) + sum += static_cast<DestValue> (k[p_k]) * + static_cast<DestValue> (input[p_im - (center - p_k)]); + output[p_im] = sum; + } + return output; + } + + /*! ** \brief Perform a convolution of an image and a window. ** ** \param DestValue Data type of the output image you want. @@ -107,4 +161,4 @@ } // end namespace oln -#endif // OLENA_CONVOL_CONVOLUTION_HH__ +#endif // OLENA_CONVOL_SLOW_CONVOLUTION_HH__ Index: olena/oln/transforms/fft.hh --- olena/oln/transforms/fft.hh Fri, 19 Mar 2004 14:01:37 +0100 palma_g (oln/i/36_fft.hh 1.4.1.10 600) +++ olena/oln/transforms/fft.hh Mon, 14 Jun 2004 05:38:16 +0200 odou_s (oln/i/36_fft.hh 1.4.1.10 600) @@ -41,6 +41,7 @@ # include <ntg/basics.hh> # include <ntg/all.hh> # include <oln/basics2d.hh> +# include <oln/morpher/piece_morpher.hh> namespace oln { @@ -485,6 +486,84 @@ } /*! + ** \brief Shift zero-frequency component of discrete Fourier transform + ** to center of spectrum. + ** + ** \param T1 The data type of the image returned. + ** + ** The zero-frequency component of discrete Fourier transform are moved + ** to center of the image : + ** + ** \htmlonly + ** <table> + ** <tr><td>1</td><td>2</td></tr> + ** <tr><td>3</td><td>4</td></tr> + ** </table> + ** becomes + ** <table> + ** <tr><td>4</td><td>3</td></tr> + ** <tr><td>2</td><td>1</td></tr> + ** </table> + ** \endhtmlonly + ** + */ + template <class T1> + image2d<T1> shift_transform_inv() + { + image2d<T1> t = transform_inv<T1>(); + image2d<T1> st(t.size()); + + // We have to exchange t_1 with t_1_dest and not directly t_3 because + // they have not he same size. + typedef morpher::piece_morpher< image2d<T1> > piece_t; + piece_t t_1(t, dpoint2d(0, 0), + image2d_size((t.size().nrows() - 1) / 2, + (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_1_dest(st, dpoint2d(t.nrows() - t_1.nrows(), + t.ncols() - t_1.ncols()), + image2d_size(t_1.nrows(), t_1.ncols(), + t.border())); + piece_t t_2(t, dpoint2d(0, (t.size().ncols() - 1) / 2), + image2d_size((t.size().nrows() - 1) / 2, + t.size().ncols() - (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_2_dest(st, dpoint2d(t.nrows() - t_2.nrows(), 0), + image2d_size(t_2.nrows(), t_2.ncols(), + t.border())); + piece_t t_3(t, dpoint2d((t.size().nrows() - 1) / 2, 0), + image2d_size(t.size().nrows() - (t.size().nrows() - 1) / 2, + (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_3_dest(st, dpoint2d(0, t.ncols() - t_3.ncols()), + image2d_size(t_3.nrows(), t_3.ncols(), + t.border())); + piece_t t_4(t, dpoint2d((t.size().nrows() - 1) / 2, + (t.size().ncols() - 1) / 2), + image2d_size(t.size().nrows() - (t.size().nrows() - 1) / 2, + t.size().ncols() - (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_4_dest(st, dpoint2d(0, 0), + image2d_size(t_4.nrows(), t_4.ncols(), + t.border())); + + oln_iter_type(piece_t) i1(t_1); + for_all(i1) + t_1_dest[i1] = t_1[i1]; + oln_iter_type(piece_t) i2(t_2); + for_all(i2) + t_2_dest[i2] = t_2[i2]; + oln_iter_type(piece_t) i3(t_3); + for_all(i3) + t_3_dest[i3] = t_3[i3]; + oln_iter_type(piece_t) i4(t_4); + for_all(i4) + t_4_dest[i4] = t_4[i4]; + + return st; + } + + /*! ** \brief Compute and return the invert transform. */ image2d<T> transform_inv() @@ -492,6 +571,15 @@ return transform_inv<T>(); } + /*! + ** \brief Shift zero-frequency component of discrete Fourier transform + ** to center of spectrum. + */ + image2d<T> shift_transform_inv() + { + return shift_transform_inv<T>(); + } + }; /*! Index: olena/tests/convol/Makefile.am --- olena/tests/convol/Makefile.am Tue, 05 Aug 2003 21:39:33 +0200 burrus_n (oln/f/38_Makefile.a 1.13 600) +++ olena/tests/convol/Makefile.am Mon, 14 Jun 2004 07:24:23 +0200 odou_s (oln/f/38_Makefile.a 1.13 600) @@ -1,4 +1,7 @@ include ../check/Makefile.runtests +LDADD_RUNTESTS += $(FFTW_LDFLAGS) +CXXFLAGS_RUNTESTS += $(FFTW_CFLAGS) + EXTRA_DIST += sum_on_random.pgm CLEANFILES += lena-sobel.pgm Index: olena/tests/convol/tests/slow_sum_2d_1 --- olena/tests/convol/tests/slow_sum_2d_1 Tue, 20 Apr 2004 15:16:21 +0200 van-vl_n (oln/f/41_slow_sum_2 1.2.1.6 600) +++ olena/tests/convol/tests/slow_sum_2d_1 Mon, 14 Jun 2004 08:14:27 +0200 odou_s (oln/f/41_slow_sum_2 1.2.1.6 600) @@ -28,7 +28,7 @@ #include <oln/basics2d.hh> -#include <oln/convol/convolution.hh> +#include <oln/convol/slow_convolution.hh> #include <oln/level/compare.hh> Index: olena/tests/convol/tests/slow_sum_2d_2 --- olena/tests/convol/tests/slow_sum_2d_2 Tue, 20 Apr 2004 15:16:21 +0200 van-vl_n (oln/f/40_slow_sum_2 1.2.1.5 600) +++ olena/tests/convol/tests/slow_sum_2d_2 Mon, 14 Jun 2004 08:14:37 +0200 odou_s (oln/f/40_slow_sum_2 1.2.1.5 600) @@ -28,7 +28,7 @@ #include <oln/basics2d.hh> -#include <oln/convol/convolution.hh> +#include <oln/convol/slow_convolution.hh> #include <oln/level/compare.hh> Index: olena/tests/convol/tests/sobel_gradient --- olena/tests/convol/tests/sobel_gradient Tue, 20 Apr 2004 15:16:21 +0200 van-vl_n (oln/f/45_sobel_grad 1.3.1.7 600) +++ olena/tests/convol/tests/sobel_gradient Mon, 14 Jun 2004 08:15:02 +0200 odou_s (oln/f/45_sobel_grad 1.3.1.7 600) @@ -28,7 +28,7 @@ #include <oln/basics2d.hh> -#include <oln/convol/convolution.hh> +#include <oln/convol/slow_convolution.hh> #include <oln/convert/basics.hh> #include "check.hh" Index: doc/ref/out/exdoc.config.in --- doc/ref/out/exdoc.config.in Fri, 09 Apr 2004 16:53:44 +0200 thivol_d (oln/k/7_exdoc.conf 1.7 600) +++ doc/ref/out/exdoc.config.in Mon, 14 Jun 2004 07:03:20 +0200 odou_s (oln/k/7_exdoc.conf 1.7 600) @@ -4,7 +4,8 @@ TAG_CLOSE = endcode CAPTIONS = cxx # We want to run cxx on the extracted files (see line below) ALIAS cxx = @CXX@ # Here, cxx means g++ but you can choose other compilers - OPTIONS = @DOC_CPPFLAGS@ @CXXFLAGS_OPTIMIZE@ @CXXFLAGS_STRICT_ERRORS@ -I@top_srcdir@/integre -I@top_builddir@/olena -I@top_srcdir@/olena -I@top_srcdir@/metalic $1 -o $2 -DIMG_OUT=\"../img/\" -DIMG_IN=\"@top_srcdir@/olena/img/\" # tell how to use the soft, i.e. where to put input and output arguments (default if not overriden) ($1: input, $2: output) FIXME: $* should have explicit name, chek flags + # FIXME: we should write the compilation line in the source file (for libs). + OPTIONS = -lz -lfftw -lrfftw @DOC_CPPFLAGS@ @CXXFLAGS_OPTIMIZE@ @CXXFLAGS_STRICT_ERRORS@ -I@top_srcdir@/integre -I@top_builddir@/olena -I@top_srcdir@/olena -I@top_srcdir@/metalic -I@top_builddir@ $1 -o $2 -DIMG_OUT=\"../img/\" -DIMG_IN=\"@top_srcdir@/olena/img/\" -DHAVE_CONFIG_H # tell how to use the soft, i.e. where to put input and output arguments (default if not overriden) ($1: input, $2: output) FIXME: $* should have explicit name, chek flags OUT = out # FIXME: should be obsolete EXT = cc # Extension of generated file STD_OUT_EXT = std # Extension of generated file standard output Index: olena/oln/makefile.src --- olena/oln/makefile.src Sun, 06 Jun 2004 23:17:15 +0200 thivol_d (oln/r/4_makefile.s 1.2 600) +++ olena/oln/makefile.src Fri, 11 Jun 2004 03:14:27 +0200 odou_s (oln/r/4_makefile.s 1.2 600) @@ -31,7 +31,8 @@ convert/rgbxyz.hh \ convert/stretch.hh \ convert/value_to_point.hh \ - convol/convolution.hh \ + convol/slow_convolution.hh \ + convol/fast_convolution.hh \ convol/fast_gaussian.hh \ convol/fast_gaussian.hxx \ convol/fast_gaussian_coefficient.hh \ Index: olena/oln/convol/slow_gaussian.hh --- olena/oln/convol/slow_gaussian.hh Wed, 09 Jun 2004 20:13:57 +0200 van-vl_n (oln/r/7_slow_gauss 1.2 644) +++ olena/oln/convol/slow_gaussian.hh Mon, 14 Jun 2004 08:31:10 +0200 odou_s (oln/r/7_slow_gauss 1.2 644) @@ -30,7 +30,7 @@ # define SLOW_GAUSSIAN_HH # include <oln/core/image.hh> # include <ntg/float.hh> -# include "convolution.hh" +# include <oln/convol/slow_convolution.hh> # include <oln/core/behavior.hh> namespace oln { @@ -87,7 +87,14 @@ { const typename gaussian_kernel<I::dim>::ret k = gaussian_kernel<I::dim>::kernel(sigma, radius_factor); - behavior.adapt_border(in, coord(k.delta())); + + // Compute Delta. + // \todo FIXME: should be in the image hierarchy. + coord delta = 0; + for (unsigned i = 0; i < I::dim; i++) + if (in.size().nth(i) > delta) + delta = in.size().nth(i); + behavior.adapt_border(in, delta); typename mute<I, ntg::float_d>::ret im = oln::convol::slow::convolve<ntg::float_d> (in, k); Index: olena/oln/convol/slow_gaussian.hxx --- olena/oln/convol/slow_gaussian.hxx Wed, 09 Jun 2004 20:13:57 +0200 van-vl_n (oln/r/8_slow_gauss 1.2 644) +++ olena/oln/convol/slow_gaussian.hxx Mon, 14 Jun 2004 05:42:37 +0200 odou_s (oln/r/8_slow_gauss 1.2 644) @@ -28,9 +28,9 @@ #ifndef SLOW_GAUSSIAN_HXX # define SLOW_GAUSSIAN_HXX -# include <oln/core/w_window1d.hh> -# include <oln/core/w_window2d.hh> -# include <oln/core/w_window3d.hh> +# include <oln/core/image1d.hh> +# include <oln/core/image2d.hh> +# include <oln/core/image3d.hh> namespace oln { namespace convol { @@ -44,29 +44,31 @@ inline T normalise(const T &in) { - T w = in; + T w(in.size()); ntg::float_d sum = 0.; - for (unsigned i = 0; i < in.card(); ++i) - sum += in.w(i); + oln_iter_type(T) i(in); + for_all(i) + sum += in[i]; sum = 1. / sum; assert(finite(sum)); - for (unsigned i = 0; i < in.card(); ++i) - w.set(w.dp(i), in.w(i) * sum); + for_all(i) + w[i] = in[i] * sum; return w; } + }// End namespace internal //! Kernel of a 1D Gaussian. template<> struct gaussian_kernel<1> { - typedef oln::w_window1d<ntg::float_d> ret; + typedef oln::image1d<ntg::float_d> ret; enum {dim = 1}; //! Return a discrete Gaussian kernel, that is equal to zero // at a distance of radius_factor * sigma. - static w_window1d<ntg::float_d> + static image1d<ntg::float_d> kernel(ntg::float_d sigma, ntg::float_d radius_factor) { @@ -79,20 +81,20 @@ // // Note: the integral is not equal to 1 (discrete grid and 0 outside // radius_factor * sigma). You should use kernel(sigma, radius_factor). - static w_window1d<ntg::float_d> + static image1d<ntg::float_d> kernel_values(ntg::float_d sigma, ntg::float_d radius_factor) { precondition(sigma > 0.); precondition(radius_factor >= 0.); - w_window1d<ntg::float_d> w; - const int size = int(sigma * radius_factor); + image1d<ntg::float_d> w(size * 2 + 1); + const ntg::float_d inv_sigma_sqrt_2pi = 1. / (sigma * sqrt(M_PI * 2.)); - for (int x = -size; x <= +size; ++x) - w.add(x, inv_sigma_sqrt_2pi * exp(-x * x /(2 * sigma * sigma))); + for (int x = -size; x <= size; ++x) + w(x + size) = inv_sigma_sqrt_2pi * exp(-x * x /(2 * sigma * sigma)); return w; } }; @@ -101,12 +103,12 @@ template<> struct gaussian_kernel<2> { - typedef w_window2d<ntg::float_d> ret; + typedef image2d<ntg::float_d> ret; enum {dim = 2}; //! Return a discrete Gaussian kernel, that is equal to zero at a // distance of radius_factor * sigma. - static w_window2d<ntg::float_d> + static image2d<ntg::float_d> kernel(ntg::float_d sigma, ntg::float_d radius_factor) { @@ -120,26 +122,27 @@ // // Note: the integral is not equal to 1 (discrete grid and 0 outside // radius_factor * sigma). You should use kernel(sigma, radius_factor). - static w_window2d<ntg::float_d> + static image2d<ntg::float_d> kernel_values(ntg::float_d sigma, ntg::float_d radius_factor) { precondition(sigma > 0.); precondition(radius_factor >= 0.); - w_window2d<ntg::float_d> w; - const int size = int(sigma * radius_factor); + image2d<ntg::float_d> w = image2d<ntg::float_d>(size * 2 + 1, + size * 2 + 1); + const ntg::float_d inv_sigma_sigma_pi_2 = 1. / (sigma * sigma * M_PI * 2.); - - for (int x = -size; x <= +size; ++x) - for (int y = -size; y <= +size; ++y) + for (int x = -size ; x <= size; ++x) + for (int y = -size ; y <= size; ++y) if (x * x + y * y <= size * size) - w.add(x, y, inv_sigma_sigma_pi_2 + w(x + size, y + size) = inv_sigma_sigma_pi_2 * exp(- (x * x + y * y) / ( 2. * sigma * sigma) - ) ); + else + w(x + size, y + size) = 0; return w; } }; @@ -148,12 +151,12 @@ template<> struct gaussian_kernel<3> { - typedef w_window3d<ntg::float_d> ret; + typedef image3d<ntg::float_d> ret; enum {dim = 3}; //! Return a discrete Gaussian kernel, that is equal to zero at a // distance of radius_factor * sigma. - static w_window3d<ntg::float_d> + static image3d<ntg::float_d> kernel(ntg::float_d sigma, ntg::float_d radius_factor) { @@ -168,16 +171,18 @@ // // Note: the integral is not equal to 1 (discrete grid and 0 outside // radius_factor * sigma). You should use kernel(sigma, radius_factor). - static w_window3d<ntg::float_d> + static image3d<ntg::float_d> kernel_values(ntg::float_d sigma, ntg::float_d radius_factor) { precondition(sigma > 0.); precondition(radius_factor >= 0.); - w_window3d<ntg::float_d> w; - const int size = int(sigma * radius_factor); + image3d<ntg::float_d> w(size * 2 + 1, + size * 2 + 1, + size * 2 + 1); + const ntg::float_d k = 1. / (sigma * sigma * sigma * sqrt((M_PI * 2.) * (M_PI * 2.) * (M_PI * 2.))); @@ -186,9 +191,11 @@ for (int y = -size; y <= +size; ++y) for (int z = -size; z <= +size; ++z) if (x * x + y * y + z * z <= size) - w.add(x, y, z, k * + w(x + size, y + size, z + size) = k * exp(-(x * x + y * y + z * z) - ) / (2. * sigma * sigma)); + ) / (2. * sigma * sigma); + else + w(x + size, y + size, z + size) = 0; return w; } }; Index: olena/oln/convol/fast_convolution.hh --- olena/oln/convol/fast_convolution.hh Mon, 14 Jun 2004 09:04:45 +0200 odou_s () +++ olena/oln/convol/fast_convolution.hh Mon, 14 Jun 2004 07:40:15 +0200 odou_s (oln/r/12_fast_convo 644) @@ -0,0 +1,173 @@ +// Copyright (C) 2004 EPITA Research and Development Laboratory +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 59 Temple Place - Suite 330, Boston, +// MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + + +#ifndef OLENA_CONVOL_FAST_CONVOLUTION_HH__ +# define OLENA_CONVOL_FAST_CONVOLUTION_HH__ + +# include <oln/basics.hh> +# include <oln/basics2d.hh> +# include <ntg/all.hh> +# include <mlc/cmp.hh> +# include <mlc/array/all.hh> +# include <oln/transforms/fft.hh> +# include <oln/morpher/piece_morpher.hh> + +namespace oln { + + /*! \brief Algorithms related to convolution. + */ + namespace convol { + + /*! \brief Convolution algorithms. + */ + namespace fast { + + /*! + ** \brief Perform a convolution of two images. + ** + ** \param DestValue Data type of the output image you want. + ** \param I Exact type of the input image. + ** \param J Exact type of the input image (convolution kernel). + ** + ** \arg input The image to process. + ** \arg k The kernel to convolve with. + ** + ** \todo FIXME: the kernel could be bigger than the image. + ** \todo FIXME: supports only 2 dimensions (like the fft). + ** + ** The algorithm is just the convolution theorem application. + ** + ** This example compute a fast gaussian convolution : + ** \code + ** #include <oln/basics2d.hh> + ** #include <oln/convol/slow_gaussian.hh> + ** #include <oln/convol/fast_convolution.hh> + ** + ** using namespace oln; + ** using namespace ntg; + ** + ** int main() { + ** image2d<int_u8> src(IMG_IN "lena.pgm"); + ** float_d sigma = 2.5; + ** float_d radius = 3; + ** image2d<float_d> k = convol::slow::gaussian_kernel<2>::kernel(sigma, radius); + ** image2d<float_d> f_src(src.size()); + ** oln_iter_type_(image2d<float_d>) i(src); + ** for_all(i) + ** f_src[i] = float_d(src[i]); + ** image2d<float_d> tmp = convol::fast::convolve<float_d>(f_src, k); + ** for_all(i) + ** src[i] = int_u8(tmp[i]); + ** save(src, IMG_OUT "oln_convol_fast_convolve.pgm"); + ** } + ** \endcode + ** \image html lena_pgm.png + ** \image latex lena_pgm.png + ** => + ** \image html oln_convol_fast_convolve.pgm + ** \image latex oln_convol_fast_convole.pgm + ** + */ + template<class DestValue, class I, class J> + typename mute<I, DestValue>::ret + convolve(const abstract::image< I >& input, + const abstract::image< J >& k) + { + mlc::eq<I::dim, J::dim>::ensure(); + mlc::eq<I::dim, 2>::ensure(); + assert(input.npoints() > k.npoints()); + + // We compute k with a size of input (k is centered in big_k). + image2d<oln_value_type(J)> big_k(input.size()); +#define CENTER_DST(I) \ +((I) % 2 ? (I) / 2 + 1 : (I) / 2) +#define CENTER_SRC(I) \ +((I) % 2 ? (I) / 2 : ((I) - 1) / 2) + typedef morpher::piece_morpher< image2d<oln_value_type(J)> > piece_t; + piece_t piece_k(big_k, + dpoint2d(CENTER_DST(big_k.size().nrows()) - + CENTER_SRC(k.size().nrows()) - 1, + CENTER_DST(big_k.size().ncols()) - + CENTER_SRC(k.size().ncols()) - 1), + oln::image2d_size(k.size().nrows(), + k.size().ncols(), + big_k.border())); + oln_iter_type(piece_t) i_k(piece_k); + for_all(i_k) + piece_k[i_k] = k[i_k]; + + transforms::fft<oln_value_type(I), ntg::rect> tr_input(input.exact()); + transforms::fft<oln_value_type(J), ntg::rect> tr_k(big_k.exact()); + + tr_input.transform(); + typename mute<I, ntg::cplx<ntg::rect, ntg::float_d> >::ret& + Input = tr_input.transformed_image(); + const typename mute<J, ntg::cplx<ntg::rect, ntg::float_d> >::ret + K = tr_k.transform(); + + oln_iter_type(I) i_input(Input); + for_all(i_input) { + Input[i_input] *= K[i_input]; + // Scale. + Input[i_input] *= Input.size().nrows() * Input.size().ncols(); + } + + typename mute<I, DestValue>::ret output = tr_input.shift_transform_inv(); + + return output; + } + + /*! + ** \brief Perform a convolution of an image and a window. + ** + ** \param DestValue Data type of the output image you want. + ** \param I Exact type of the input image. + ** \param Info Informations about the array. + ** \param Win Data type of the array. + ** + ** \arg input The image to process. + ** \arg arr The array to convolve with. + ** + ** \todo FIXME: don't use array1d, ..., arraynd. + */ + template<class DestValue, class I, class Info, class Win> + typename mute<I, DestValue>::ret + convolve(const abstract::image < I >& input, + const mlc::array2d<Info, Win >& arr) + { + return convolve<DestValue>(input, static_cast< image2d<Win> >(arr)); + // FIXME: Should be abstract::w_window<T_arr>. Adjust #include once done. + } + + } // end namespace fast + + } // end namespace convol + +} // end namespace oln + +#endif // OLENA_CONVOL_FAST_CONVOLUTION_HH__ Index: olena/tests/convol/tests/fast_convol --- olena/tests/convol/tests/fast_convol Mon, 14 Jun 2004 09:04:45 +0200 odou_s () +++ olena/tests/convol/tests/fast_convol Mon, 14 Jun 2004 07:59:18 +0200 odou_s (oln/r/13_fast_convo 644) @@ -0,0 +1,33 @@ +#include "data.hh" +#include "check.hh" + +#include <oln/basics2d.hh> +#include <oln/convol/slow_gaussian.hh> +#include <oln/convol/fast_convolution.hh> +#include <oln/utils/md5.hh> + +using namespace oln; +using namespace ntg; + +int main() { + oln::utils::key::value_type data_key[] = + {0x7a, 0x42, 0xc0, 0xa5, 0xec, 0xc7, 0x14, 0xa, 0xc7, + 0x21, 0xd9, 0x1f, 0xdb, 0xfa, 0x54, 0xb9}; + oln::utils::key key(data_key); + + image2d<int_u8> src(rdata("lena.pgm")); + float_d sigma = 2.5; + float_d radius = 3; + image2d<float_d> k = convol::slow::gaussian_kernel<2>::kernel(sigma, radius); + image2d<float_d> f_src(src.size()); + oln_iter_type_(image2d<float_d>) i(src); + for_all(i) + f_src[i] = float_d(src[i]); + + image2d<float_d> tmp = convol::fast::convolve<float_d>(f_src, k); + + for_all(i) + src[i] = tmp[i]; + if (oln::utils::md5(src) != key) + return false; +} -- Simon Odou simon(a)lrde.epita.fr

19 years, 10 months

[Niels van Vliet] [INFOGRAPHIE] Olena: fichiers et liens

by Akim Demaille

Il n'est pas normal qu'Olena dépende d'un compte étudiant. Il faudrait trouver une solution pour faire les mises à jour dans www.lrde.epita.fr.

19 years, 10 months

performances à l'exécution

by Thierry GERAUD

~theo/temp/anies.cc la compilation ci-dessous correspond à ce que fait olena-0.10 : g++ -finline-limit-1000 -O3 anies.cc tegucigalpa% time ./a.out ./a.out 0,96s user 0,01s system 100% cpu 0,961 total tegucigalpa% time ./a.out ./a.out 0,96s user 0,01s system 100% cpu 0,961 total tegucigalpa% time ./a.out ./a.out 0,96s user 0,01s system 101% cpu 0,955 total et le futur : g++ -finline-limit-1000 -O3 anies.cc -DFUTURE tegucigalpa% time ./a.out ./a.out 0,62s user 0,01s system 100% cpu 0,626 total tegucigalpa% time ./a.out ./a.out 0,62s user 0,01s system 101% cpu 0,624 total tegucigalpa% time ./a.out ./a.out 0,63s user 0,00s system 101% cpu 0,621 total

19 years, 10 months

olena / swt

by Thierry GERAUD

suite à une discussion rapide hier soir, il semble que le fait que je n'utilise pas la dernière version d'olena pour la prestation SWT ait un effet (psychologique) négatif sur le labo. De plus, on m'a répété des propos que je ne revendique pas. je préfère donc *écrire* ce que j'ai déjà dit plusieurs fois. les deux raisons principales pour lesquelles je tourne la version 0.5 : - étant complètement à la bourre, le portage (pas énorme) est d'une priorité ridicule par rapport aux livraisons que j'ai en retard (comprendre : nuisible à mon planning) - comme j'effectue bcp de couple compilation/test, le temps de compilation est critique pour mon avancement le détail maintenant : - la version 0.5 compile avec g++-2.95 - les versions plus récentes ne compilent pas avec g++-2.95 - les temps de compilation avec g++-2.95 sont inférieurs à ceux de des g++-3* pour preuve : ........................................................... olena-0.5 2.95.4 (2.95.4 opt) 3.3.3 (3.3.3 opt) ........................................... compilation 5,74s 10,90s 6,97s 13,25s exécution 1,15s 1,08s ........................................................... olena-0.10 3.3.3 (3.3.3 opt) ........................................... compilation 12,26s 23,28s exécution 1,91s ........................................................... mes soi-disant propos (que je déclare n'avoir jamais dit) : (1) << je n'utilise pas des versions d'olena récentes parce qu'elles se trainent >> en corrolaire, on m'a donc rapporté : (2a) << olena, c'est lent >> et (2b) << en voulant être générique et rapide, on n'est ni l'un ni l'autre ; d'ailleurs SCOOP ne marche pas >> MISES AU POINT : (1) regardez les tableaux ci-dessus, ce n'est pas le temps d'exécution qui me pénalise dans l'utilisation d'olena ; rappel : je fais du "1 compilation puis 1 test" à répétition ! (2) que les personnes qui ont dit ça en parlent ouvertement et non pas dans mon dos, qu'elles donnent des chiffres, des arguments (pas des impressions) comme vous l'aurez peut-être deviné, le code swt tourne maintenant avec la version 0.10 d'olena.

19 years, 10 months

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Olena June 2004