[Olena-patches] 1732: Add a test applying a full WST-based segmentation chain on a line graph.

https://svn.lrde.epita.fr/svn/oln/trunk/milena I know I should probably move the tests related to the WST to tests/morpho. Please recall this to me if I forget to do it. TIA. Index: ChangeLog from Roland Levillain &lt;roland(a)lrde.epita.fr&gt; Add a test applying a full WST-based segmentation chain on a line graph. * tests/core/lena_line_graph_image_wst.cc: New test. * tests/core/graph_image_wst.cc: Fix Doxygen header. * tests/core/Makefile.am (check_PROGRAMS): Add lena_line_graph_image_wst. (lena_line_graph_image_wst_SOURCES) (lena_line_graph_image_wst_CXXFLAGS): New. * tests/morpho/Makefile.am (meyer_wst_long_CXXFLAGS): Append -ggdb. core/Makefile.am | 5 core/graph_image_wst.cc | 4 core/lena_line_graph_image_wst.cc | 249 ++++++++++++++++++++++++++++++++++++++ morpho/Makefile.am | 2 4 files changed, 257 insertions(+), 3 deletions(-) Index: tests/core/lena_line_graph_image_wst.cc --- tests/core/lena_line_graph_image_wst.cc (revision 0) +++ tests/core/lena_line_graph_image_wst.cc (revision 0) @@ -0,0 +1,249 @@ +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file tests/core/line_graph_image.cc +/// \brief Tests on the Watershed Transform on a mln::line_graph_image. + +#include <vector> + +#include <mln/core/image2d.hh> +#include <mln/core/point2d.hh> +#include <mln/core/window2d.hh> +#include <mln/core/neighb2d.hh> + +#include <mln/core/line_graph_image.hh> +#include <mln/core/line_graph_elt_neighborhood.hh> +#include <mln/core/line_graph_neighborhood_piter.hh> + +#include <mln/morpho/gradient.hh> +#include <mln/morpho/closing_area.hh> +#include <mln/morpho/meyer_wst.hh> + +#include <mln/value/int_u8.hh> +// #include <mln/value/int_u16.hh> +#include <mln/value/rgb8.hh> +#include <mln/literal/black.hh> +#include <mln/literal/colors.hh> + +#include <mln/io/pgm/load.hh> +#include <mln/io/ppm/save.hh> + +#include <mln/math/max.hh> +#include <mln/math/abs.hh> + +#include "tests/data.hh" + + + +int main() +{ + using namespace mln; + using value::int_u8; +// using value::int_u16; + using value::rgb8; + + /*--------. + | Input. | + `--------*/ + + typedef int_u8 input_val_t; + image2d<input_val_t> input; +// io::pgm::load(input, MLN_IMG_DIR "/small.pgm"); + io::pgm::load(input, MLN_IMG_DIR "/tiny.pgm"); + + /* FIXME: Don't compute a gradient on the image2d input. Instead, + have the values of the line graph image /behaves/ as the gradient + of the input, i.e., edges should hold the absolute difference + between gray levels. + */ + image2d<input_val_t> gradient = + morpho::gradient (input, convert::to_window(c4())); + + // Simplify the input image. + image2d<input_val_t> work(input.domain()); +// morpho::closing_area(gradient, c4(), 50, work); + morpho::closing_area(gradient, c4(), 10, work); + + /*-------------. + | Line graph. | + `-------------*/ + + // FIXME: Inlined conversion, to be reifed into a routine. + + util::graph<point2d> g; + + // Points. + /* FIXME: The need for such a structure during the conversion + exhibits the lack of a service from util::graph (or a another, + missing tool) regarding the retrieval of node ids from + points. */ + std::map<point2d, util::node_id> points; + util::node_id id = 0; + + // Nodes. + std::vector<int> node_values; + mln_fwd_piter_(image2d<input_val_t>) p(work.domain()); + for_all (p) + { + g.add_node (p); + node_values.push_back (work(p)); + /* FIXME: ``Guessing'' the id of the point just being inserted + is bad. utill:graph<N,E>::add_node should return this + id. */ + points[p] = id; + ++id; + } + + // Edges. + window2d next_c4_win; + next_c4_win.insert(0, 1).insert(1, 0); + std::vector<int> edge_values; + mln_fwd_qiter_(window2d) q(next_c4_win, p); + for_all (p) + for_all (q) + if (work.has(q)) + { + g.add_edge(points[p], points[q]); + // FIXME: Keep this valuation function? + edge_values.push_back(math::max(work(p), work(q))); + } + + // Line graph point set. + p_line_graph<point2d> plg(g); + + // Line graph image. + /* FIXME: Shouldn't we use `input_val_t' instead of plain `int' as value + type here? */ + typedef line_graph_image<point2d, int> ima_t; + ima_t lg_ima(plg, node_values, edge_values); + + /*------. + | WST. | + `------*/ + + typedef line_graph_elt_neighborhood<point2d> nbh_t; + nbh_t nbh; + + // Perform a Watershed Transform. + typedef int_u8 wst_val_t; + wst_val_t nbasins; + typedef line_graph_image<point2d, wst_val_t> wst_ima_t; + wst_ima_t wshed = morpho::meyer_wst(lg_ima, nbh, nbasins); + std::cout << "nbasins = " << nbasins << std::endl; + + /*---------. + | Output. | + `---------*/ + + // FIXME: Inlined conversion, to be reifed into a routine. + + // Save the result in gray levels (data) + color (wshed). + + // Data. + typedef rgb8 output_val_t; + typedef image2d<output_val_t> output_t; + point2d output_pmin = input.domain().pmin(); + point2d output_pmax(input.domain().pmax()[0] * 2, + input.domain().pmax()[1] * 2); + output_t output(box2d(output_pmin, output_pmax)); + level::fill(output, literal::black); + // Reuse the piter on INPUT. + for_all(p) + { + // Equivalent of P in OUTPUT. + point2d q(p[0] * 2, p[1] * 2); + input_val_t v = input(p); + /* FIXME: Use a conversion function from input_val_t to + output_val_t instead of an explicit construction. */ + output(q) = output_val_t(v, v, v); + } + // Interpolate missing points in OUTPUT. + mln_piter_(output_t) p_out(output.domain()); +// mln_niter_(neighb2d) n_out(c4(), p_out); + for_all(p_out) + { + // Process points on even rows and odd columns + if (p_out[0] % 2 == 0 && p_out[1] % 2 == 1) + output(p_out) = (output(p_out + left) + output(p_out + right)) / 2; + // Process points on odd rows and even columns + if (p_out[0] % 2 == 1 && p_out[1] % 2 == 0) + output(p_out) = (output(p_out + up) + output(p_out + down)) / 2; + // Process points on odd rows and odd columns + if (p_out[0] % 2 == 1 && p_out[1] % 2 == 1) + output(p_out) = + (output(p_out + make::dpoint2d(-1, -1)) + + output(p_out + make::dpoint2d(-1, +1)) + + output(p_out + make::dpoint2d(+1, -1)) + + output(p_out + make::dpoint2d(+1, +1))) / 4; + } + // Draw the watershed. + /* FIXME: We should draw the watershed on another image and + superimpose it on OUTPUT instead of drawing it directly into + OUTPUT. */ + mln_piter_(wst_ima_t) pw(wshed.domain()); + for_all(pw) + { + if (wshed(pw) == 0) + { + mln_point_(wst_ima_t) pp(pw); + // Equivalent of the line (edge) PP in OUTPUT. + int row1 = pp.first()[0] * 2; + int col1 = pp.first()[1] * 2; + int row2 = pp.second()[0] * 2; + int col2 = pp.second()[1] * 2; + point2d q((row1 + row2) / 2, (col1 + col2) / 2); + // Print the watershed in red. + output(q) = literal::red; + } + } + // Fill the holes, so that the watershed looks connected. + /* FIXME: This approach is bad: it creates thick lines of watershed. + We should probably solve this when we ``paint'' the watershed + over the ``doubled'' image. + + A better approach is probably to iterate over the set of nodes, + and ``connect'' edges according to patterns (vertically or + horizontally connected egdes member of the watershed, etc.). */ + // Reuse the piter on OUTPUT. + for_all (p_out) + // Only handle points on odd rows and columns. + if (p_out[0] % 2 == 1 && p_out[1] % 2 == 1) + { + // Count the number of adjacent watershed points. If there are + // two or more, consider, create a watershed point. + /* FIXME: Iterating over a c4 window would be more elegant, of + course. */ + unsigned nwsheds = + (output.has(p_out + up ) && output(p_out + up ) == literal::red) + + (output.has(p_out + down ) && output(p_out + down ) == literal::red) + + (output.has(p_out + left ) && output(p_out + right) == literal::red) + + (output.has(p_out + right) && output(p_out + left ) == literal::red); + if (nwsheds >= 2) + output(p_out) = literal::red; + } + io::ppm::save(output, "out.ppm"); +} Index: tests/core/graph_image_wst.cc --- tests/core/graph_image_wst.cc (revision 1719) +++ tests/core/graph_image_wst.cc (working copy) @@ -25,8 +25,8 @@ // reasons why the executable file might be covered by the GNU General // Public License. -/// \file tests/core/graph_image.cc -/// \brief Tests on mln::graph_image. +/// \file tests/core/graph_image_wst.cc +/// \brief Tests on the Watershed Transform on a mln::graph_image. #include <vector> Index: tests/core/Makefile.am --- tests/core/Makefile.am (revision 1731) +++ tests/core/Makefile.am (working copy) @@ -10,6 +10,7 @@ initialize \ graph_elt_window \ graph_image \ + lena_line_graph_image_wst \ line_graph_elt_window \ line_graph_image \ line_graph_image_wst \ @@ -51,4 +52,8 @@ t_image_SOURCES = t_image.cc tr_image_SOURCES = tr_image.cc +# FIXME: We should isolate this test, as it takes a long time. +lena_line_graph_image_wst_SOURCES = lena_line_graph_image_wst.cc +lena_line_graph_image_wst_CXXFLAGS = -O3 -ggdb + TESTS = $(check_PROGRAMS) Index: tests/morpho/Makefile.am --- tests/morpho/Makefile.am (revision 1731) +++ tests/morpho/Makefile.am (working copy) @@ -35,6 +35,6 @@ meyer_wst_SOURCES = meyer_wst.cc # FIXME: We should isolate this test, as it takes a long time. meyer_wst_long_SOURCES = meyer_wst_long.cc -meyer_wst_long_CXXFLAGS = -O3 +meyer_wst_long_CXXFLAGS = -O3 -ggdb TESTS = $(check_PROGRAMS)