[Olena-patches] 2910: New application: surface segmentation using complex-based images.

* apps/statues/mesh-complex-segm.cc: New. * apps/statues/Makefile.am (bin_PROGRAMS): Add mesh-complex-segm. (mesh_complex_segm_SOURCES): New. * apps/statues/test.in: Exercise mesh-complex-segm. * mln/core/alias/complex_image.hh (mln::unsigned_2complex_image3df): New typedef. --- milena/ChangeLog | 11 ++ milena/apps/statues/Makefile.am | 8 ++ milena/apps/statues/mesh-complex-segm.cc | 163 ++++++++++++++++++++++++++++++ milena/apps/statues/test.in | 4 + milena/mln/core/alias/complex_image.hh | 11 ++- 5 files changed, 195 insertions(+), 2 deletions(-) create mode 100644 milena/apps/statues/mesh-complex-segm.cc diff --git a/milena/ChangeLog b/milena/ChangeLog index 9224c7f..e35b296 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,5 +1,16 @@ 2008-11-19 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + New application: surface segmentation using complex-based images. + + * apps/statues/mesh-complex-segm.cc: New. + * apps/statues/Makefile.am (bin_PROGRAMS): Add mesh-complex-segm. + (mesh_complex_segm_SOURCES): New. + * apps/statues/test.in: Exercise mesh-complex-segm. + * mln/core/alias/complex_image.hh + (mln::unsigned_2complex_image3df): New typedef. + +2008-11-19 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + * mln/core/site_set/p_array.hh (nsites): Fix return type. 2008-11-18 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; diff --git a/milena/apps/statues/Makefile.am b/milena/apps/statues/Makefile.am index 971a4ec..d1e65f7 100644 --- a/milena/apps/statues/Makefile.am +++ b/milena/apps/statues/Makefile.am @@ -53,4 +53,12 @@ mesh_max_curv_CPPFLAGS = $(AM_CPPFLAGS) $(CPPFLAGS_trimesh) mesh_max_curv_LDFLAGS = $(LDFLAGS_trimesh) mesh_max_curv_LDADD = $(LDADD_trimesh) +## ---------------------------------------------------- ## +## Complex-based applications, independent of Trimesh. ## +## ---------------------------------------------------- ## + +bin_PROGRAMS += mesh-complex-segm +mesh_complex_segm_SOURCES = mesh-complex-segm.cc + + TESTS = test diff --git a/milena/apps/statues/mesh-complex-segm.cc b/milena/apps/statues/mesh-complex-segm.cc new file mode 100644 index 0000000..05fffe0 --- /dev/null +++ b/milena/apps/statues/mesh-complex-segm.cc @@ -0,0 +1,163 @@ +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file apps/statues/mesh-complex-segm.cc +/// \brief A program performing a WST-based segmentation of the +/// surface of the (triangle) mesh of a statue, using a complex-based +/// image. + +#include <cstdlib> +#include <cmath> + +#include <utility> +#include <iostream> + +#include <mln/core/image/complex_image.hh> +#include <mln/core/image/complex_neighborhoods.hh> + +#include <mln/morpho/closing_area.hh> +#include <mln/morpho/meyer_wst.hh> + +#include <mln/literal/white.hh> + +#include <mln/io/off/load.hh> +#include <mln/io/off/save.hh> + + + +int main(int argc, char* argv[]) +{ + if (argc != 4) + { + std::cerr << "usage: " << argv[0] << " input.off lambda output.off" + << std::endl; + exit(1); + } + + std::string input_filename = argv[1]; + unsigned lambda = atoi(argv[2]); + std::string output_filename = argv[3]; + + /*----------------. + | Complex image. | + `----------------*/ + + // Image type. + typedef mln::float_2complex_image3df ima_t; + // Dimension of the image (and therefore of the complex). + static const unsigned D = ima_t::dim; + // Geometry of the image. + typedef mln_geom_(ima_t) G; + + ima_t input; + mln::io::off::load(input, input_filename); + + // Values on edges. + + /* FIXME: To be improved: instead of computing the curvature on + edges from a mean of the curvature on adjacent polygons, compute + it directly from the curvature on vertices. We should probably + integrate Trimesh's curvature computation into Milena. */ + mln::p_n_faces_fwd_piter<D, G> e(input.domain(), 1); + typedef mln::complex_higher_neighborhood<D, G> adj_polygons_nbh_t; + adj_polygons_nbh_t adj_polygons_nbh; + mln_niter_(adj_polygons_nbh_t) p(adj_polygons_nbh, e); + // Iterate on edges (1-faces). + for_all(e) + { + float s = 0.0f; + unsigned n = 0; + for_all(p) + { + s += input(p); + ++n; + } + input(e) = s / n; + // An edge should be adjacent to two polygons at most. + mln_invariant(n <= 2); + } + + /*-----------------. + | Simplification. | + `-----------------*/ + + /// Adjancent edges are connected by shared polygons. + typedef + mln::complex_higher_dim_connected_n_face_neighborhood<D, G> + adj_edges_nbh_t; + adj_edges_nbh_t adj_edges_nbh; + + ima_t closed_input(input.domain()); + mln::morpho::closing_area(input, adj_edges_nbh, lambda, closed_input); + + /*------. + | WST. | + `------*/ + + /* FIXME: Note that the WST is either doing too much work, since we + have not constrained the domain of the image to 1-faces only. + + It would be great if we could use something like this: + + closed_input | mln::p_faces<1, D, G>(closed_input.domain()) + + as input of the WST. */ + + // Compute the WST on edges. + typedef unsigned wst_val_t; + wst_val_t nbasins; + typedef mln::unsigned_2complex_image3df wst_ima_t; + wst_ima_t wshed = + mln::morpho::meyer_wst(closed_input, adj_edges_nbh, nbasins); + std::cout << "nbasins = " << nbasins << std::endl; + + // Label polygons (i.e., propagate labels from edges to polygons). + for_all(e) + if (wshed(e) != 0) + for_all(p) + wshed(p) = wshed(e); + + /*---------. + | Output. | + `---------*/ + + mln::rgb8_2complex_image3df output(wshed.domain()); + mln::level::fill(output, mln::literal::white); + + // FIXME: Use a colorize functor instead. + // Choose random colors for each basin number. + std::vector<mln::value::rgb8> basin_color (nbasins + 1); + for (unsigned i = 0; i <= nbasins; ++i) + basin_color[i] = mln::value::rgb8(random() % 256, + random() % 256, + random() % 256); + mln_piter_(ima_t) f(wshed.domain()); + for_all(f) + output(f) = basin_color[wshed(f)]; + + mln::io::off::save(output, output_filename); +} diff --git a/milena/apps/statues/test.in b/milena/apps/statues/test.in index 181a1fd..92c9d31 100755 --- a/milena/apps/statues/test.in +++ b/milena/apps/statues/test.in @@ -7,3 +7,7 @@ mesh_dir=@top_srcdir@/milena/mesh time ./mesh-segm $mesh_dir/socket.off 25 socket-segm.off time ./mesh-segm $mesh_dir/teapot.off 50 teapot-segm.off time ./mesh-segm $mesh_dir/bunny-holefilled.off 500 bunny-holefilled-segm.off + +time ./mesh-complex-segm $mesh_dir/socket-max-curv.off 25 socket-max-curv-segm.off +time ./mesh-complex-segm $mesh_dir/teapot-max-curv.off 50 teapot-max-curv-segm.off +time ./mesh-complex-segm $mesh_dir/bunny-holefilled-pinv-curv.off 500 bunny-holefilled-pinv-curv-segm.off diff --git a/milena/mln/core/alias/complex_image.hh b/milena/mln/core/alias/complex_image.hh index 9dc5956..6336d6b 100644 --- a/milena/mln/core/alias/complex_image.hh +++ b/milena/mln/core/alias/complex_image.hh @@ -47,12 +47,19 @@ namespace mln mln::complex_image<2, mln::space_2complex_geometry, bool> bin_2complex_image3df; + /// \brief Type alias for an 8-bit grey-level image based on a + /// 2-complex, where 0-faces are located at floating-point + /// 3-dimensional points. + typedef + mln::complex_image<2, mln::space_2complex_geometry, mln::value::int_u8> + int_u8_2complex_image3df; + /// \brief Type alias for a grey-level image based on a 2-complex, /// where 0-faces are located at floating-point 3-dimensional /// points. typedef - mln::complex_image<2, mln::space_2complex_geometry, mln::value::int_u8> - int_u8_2complex_image3df; + mln::complex_image<2, mln::space_2complex_geometry, unsigned> + unsigned_2complex_image3df; /// \brief Type alias for a floating-point image based on a /// 2-complex, where 0-faces are located at floating-point -- 1.6.0.1