[Olena-patches] olena-2.0-67-g8bafffd Merge branch 'cleanup' into next

This is a merge commit message of the following branches: Merge: 8fbf9f2 d4b9819 Conflicts: ChangeLog milena/ChangeLog ChangeLog | 177 + Makefile.am | 91 +- README | 15 - bootstrap | 23 +- build-aux/generate_dist_headers.sh | 44 +- build-aux/strip-lrde | 23 - build-aux/texi2dvi | 146 +- configure.ac | 31 +- external/Makefile.am | 21 - external/README | 71 - external/trimesh/.gitignore | 6 - external/trimesh/COPYING | 302 - external/trimesh/ChangeLog | 95 - external/trimesh/Makedefs.Darwin | 53 - external/trimesh/Makedefs.Linux | 59 - external/trimesh/Makedefs.Linux64 | 59 - external/trimesh/Makedefs.SunOS | 50 - external/trimesh/Makedefs.Win32 | 69 - external/trimesh/Makefile.am | 19 - external/trimesh/Makerules | 80 - external/trimesh/README | 144 - external/trimesh/configure.ac | 62 - external/trimesh/gluit/COPYING.freeglut | 27 - external/trimesh/gluit/COPYING.glui | 504 - external/trimesh/gluit/Makefile.am | 91 - external/trimesh/gluit/freeglut_callbacks.c | 336 - 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- scribo/sandbox/green/mln/fun/v2v/rgb_to_rg.hh | 109 - .../green/mln/fun/v2v/rgb_to_saturation_map.hh | 83 - .../sandbox/green/mln/fun/v2v/rgb_to_value_map.hh | 75 - scribo/sandbox/green/mln/img_path.hh | 239 - scribo/sandbox/green/mln/io/plot/save_image_sh.hh | 1090 - scribo/sandbox/green/mln/math/ceil.hh | 64 - scribo/sandbox/green/mln/math/floor.hh | 64 - scribo/sandbox/green/mln/value/hsv.hh | 424 - scribo/sandbox/green/mln/value/rg.hh | 175 - scribo/sandbox/green/ok/mln/accu/histo/histo1d.hh | 334 - scribo/sandbox/green/ok/mln/accu/histo/histo2d.hh | 346 - scribo/sandbox/green/ok/mln/accu/histo/histo3d.hh | 349 - scribo/sandbox/green/ok/mln/img_path.hh | 239 - .../sandbox/green/ok/test/accu/histo/gaussian.sh | 12 - scribo/sandbox/green/ok/test/accu/histo/histo1d | Bin 802920 -> 0 bytes scribo/sandbox/green/ok/test/accu/histo/histo1d.cc | 726 - scribo/sandbox/green/test_labelling.cc | 336 - scribo/sandbox/green/test_labelling_2.cc | 342 - scribo/sandbox/green/test_labelling_3.cc | 463 - .../green/tests/accu/stat/histo1d/Makefile.am | 153 - .../green/tests/accu/stat/histo1d/histo1d.cc | 507 - .../green/tests/accu/stat/histo3d_hsl/Makefile.am | 153 - .../tests/accu/stat/histo3d_hsl/histo3d_hsl.cc | 391 - .../green/tests/accu/stat/histo3d_rgb/Makefile.am | 153 - .../tests/accu/stat/histo3d_rgb/histo3d_rgb.cc | 397 - .../green/tests/clustering/k_mean/Makefile.am | 153 - .../green/tests/clustering/k_mean/k_mean.cc | 547 - .../green/tests/clustering/kmean1d/Makefile.am | 148 - .../green/tests/clustering/kmean1d/kmean1d.cc | 483 - .../green/tests/io/plot/save_image_sh/Makefile.am | 153 - .../tests/io/plot/save_image_sh/save_image_sh.cc | 774 - .../sandbox/green/tools/labeling/histo/Makefile.am | 153 - scribo/sandbox/green/tools/labeling/histo/histo.cc | 204 - scribo/sandbox/green/tools/labeling/iz/Makefile.am | 153 - scribo/sandbox/green/tools/labeling/iz/iz.cc | 495 - .../green/tools/labeling/opening/Makefile.am | 153 - .../green/tools/labeling/opening/opening.cc | 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swilena/int_u24.i | 40 + swilena/python/Makefile.am | 12 +- 2407 files changed, 1231 insertions(+), 869568 deletions(-) diff --cc ChangeLog index b3e00ef,efd4106..ee7b9ee --- a/ChangeLog +++ b/ChangeLog @@@ -1,7 -1,180 +1,184 @@@ + 2012-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Update texi2dvi from upstream. + + * build-aux/texi2dvi: Update from CVS Texinfo. + + 2012-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Remove Trimesh sources from Olena. + + * external/trimesh/, + * external/: + Remove. + * configure.ac, + * README: + Remove anything related to Trimesh. + No longer configure external/Makefile. + * Makefile.am (SUBDIRS): Remove external. + + 2012-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + No longer configure tests of apps depending on Trimesh. + + * configure.ac: No longer configure + milena/apps/mesh-segm-skel/test-mesh-max-curv nor + milena/apps/mesh-segm-skel/test-mesh-segm. + + 2012-06-20 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Ensure `bootstrap -r' regenerates all files. + + * bootstrap: Here. + Aesthetic changes. + + 2012-06-11 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Remove non-distributed headers not required by Milena nor Scribo. + + * build-aux/generate_dist_headers.sh: No longer handle the third + argument (list of non-distributed files). + * milena/Makefile.am, + * scribo/Makefile.am + (regen-am, $(srcdir)/headers.mk): Adjust. + (EXTRA_DIST): Remove nodist-headers. + * milena/headers.mk, + * scribo/headers.mk: + Regen. + * milena/nodist-headers, + * scribo/nodist-headers: + Remove. + * milena/mln/accu/math/inf.hh, + * milena/mln/accu/math/sup.hh, + * milena/mln/core/image/vmorph/thru_image.hh, + * milena/mln/core/image/vmorph/thrubin_image.hh, + * milena/mln/data/was.median.hh, + * milena/mln/extract/all.hh, + * milena/mln/extract/blue.hh, + * milena/mln/extract/essential.hh, + * milena/mln/extract/green.hh, + * milena/mln/extract/hue.hh, + * milena/mln/extract/lum.hh, + * milena/mln/extract/red.hh, + * milena/mln/extract/sat.hh, + * milena/mln/fun/access/all.hh, + * milena/mln/fun/access/mean.hh, + * milena/mln/fun/accu_result.hh, + * milena/mln/fun/binary.hh, + * milena/mln/fun/binary_param.hh, + * milena/mln/fun/component/blue.hh, + * milena/mln/fun/component/comp.hh, + * milena/mln/fun/component/comp_count.hh, + * milena/mln/fun/component/green.hh, + * milena/mln/fun/component/ithcomp.hh, + * milena/mln/fun/component/red.hh, + * milena/mln/fun/component/rgb.hh, + * milena/mln/fun/component/scomp.hh, + * milena/mln/fun/compose.hh, + * milena/mln/fun/composition.hh, + * milena/mln/fun/from_accu.hh, + * milena/mln/fun/math/abs.hh, + * milena/mln/fun/math/cos.hh, + * milena/mln/fun/math/inf.hh, + * milena/mln/fun/math/norm.hh, + * milena/mln/fun/math/sup.hh, + * milena/mln/fun/meta/all.hh, + * milena/mln/fun/meta/blue.hh, + * milena/mln/fun/meta/essential.hh, + * milena/mln/fun/meta/first.hh, + * milena/mln/fun/meta/green.hh, + * milena/mln/fun/meta/hue.hh, + * milena/mln/fun/meta/inty.hh, + * milena/mln/fun/meta/lum.hh, + * milena/mln/fun/meta/red.hh, + * milena/mln/fun/meta/sat.hh, + * milena/mln/fun/meta/second.hh, + * milena/mln/fun/meta/to_enc.hh, + * milena/mln/fun/param.hh, + * milena/mln/fun/point/col.hh, + * milena/mln/fun/point/row.hh, + * milena/mln/fun/point/sli.hh, + * milena/mln/fun/spe/binary.hh, + * milena/mln/fun/spe/unary.hh, + * milena/mln/fun/unary.hh, + * milena/mln/fun/unary_param.hh, + * milena/mln/fun/v2v/hsi_to_rgb.hh, + * milena/mln/fun/v2v/rgb_to_hsi.hh, + * milena/mln/linear/gaussian/filter.hh, + * milena/mln/linear/gaussian/impl.hh, + * milena/mln/linear/gaussian/internal/coefficients.hh, + * milena/mln/registration/all.hh, + * milena/mln/registration/essential.hh, + * milena/mln/registration/get_rot.hh, + * milena/mln/registration/get_rtransf.hh, + * milena/mln/registration/icp.hh, + * milena/mln/registration/internal/rms.hh, + * milena/mln/registration/registration.hh, + * milena/mln/subsampling/all.hh, + * milena/mln/subsampling/essential.hh, + * milena/mln/subsampling/gaussian_subsampling.hh, + * milena/mln/subsampling/subsampling.hh, + * milena/mln/trait/functions.hh, + * milena/mln/trait/next/solve.hh, + * milena/mln/trait/next/solve_binary.hh, + * milena/mln/trait/next/solve_proxy.hh, + * milena/mln/trait/next/solve_unary.hh, + * milena/mln/value/hsi.hh, + * milena/mln/value/shell.hh, + * milena/mln/value/stack.hh, + Remove. + * milena/tests/unit_test/unit-tests.mk: Regen. + + 2012-06-11 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Strip and remove files to match distributed files. + + * configure.ac, + * milena/mln/accu/math/all.hh, + * milena/mln/all.hh, + * milena/mln/core/image/vmorph/all.hh, + * milena/mln/core/image/vmorph/fun_image.hh, + * milena/mln/data/all.hh, + * milena/mln/essential/routine.hh, + * milena/mln/fun/all.hh, + * milena/mln/fun/essential.hh, + * milena/mln/fun/v2v/all.hh, + * milena/mln/fun/v2v/essential.hh, + * milena/mln/linear/all.hh, + * milena/mln/trait/all.hh, + * milena/mln/trait/ch_value.hh, + * milena/mln/value/all.hh, + * milena/mln/value/essential.hh, + * milena/tests/Makefile.am, + * milena/tests/convert/Makefile.am, + * milena/tests/extract/Makefile.am, + * milena/tests/fun/v2v/Makefile.am, + * milena/tests/linear/Makefile.am, + * milena/tests/linear/gaussian/Makefile.am, + * milena/tests/registration/Makefile.am, + * milena/tests/trait/ch_value.cc, + * milena/tests/value/Makefile.am: + Strip (some) parts between tags `<<lrde' and `>>'. + * Makefile.am: Likewise. + (LRDE_STRIPPED_DIST_FILES, LRDE_NODIST_FILES, dist-hook): Remove. + * milena/tests/convert/to_hsl.cc, + * milena/tests/extract/blue.cc, + * milena/tests/extract/green.cc, + * milena/tests/extract/hue.cc, + * milena/tests/extract/lum.cc, + * milena/tests/extract/red.cc, + * milena/tests/extract/sat.cc, + * milena/tests/fun/v2v/component.cc, + * milena/tests/linear/gaussian/filter.cc, + * milena/tests/registration/registration.cc, + * milena/tests/value/stack.cc: + Remove. + * build-aux/strip-lrde: Remove. + +2011-11-14 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + * configure.ac: Configure milena/apps/morphers/Makefile. + 2011-11-16 Guillaume Lazzara &lt;z(a)lrde.epita.fr&gt; * m4/oln-with-lib.m4: Lookup for multiple AND single libraries diff --cc milena/ChangeLog index 4320702,99a5929..894d261 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@@ -1,246 -1,54 +1,297 @@@ + 2012-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Provide typedefs mln::value::int_s24 and mln::value::int_u24. + + * mln/value/int_s24.hh, + * mln/value/int_u24.hh: + New. + + 2012-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Rename Trimesh reimplementations in apps/mesh-segm-skel/. + + * apps/mesh-segm-skel/trimesh/misc.hh: Move... + * apps/mesh-segm-skel/misc.hh: ...here. + Update comments. + * apps/mesh-segm-skel/mesh-complex-max-curv-segm.cc, + * apps/mesh-segm-skel/mesh-complex-max-curv.cc: + Adjust. + * apps/mesh-segm-skel/trimesh/README: Remove. + * apps/mesh-segm-skel/Makefile.am (noinst_HEADERS, EXTRA_DIST): + Adjust. + + 2012-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Remove anything depending on the Trimesh library. + + * apps/mesh-segm-skel/io.hh, + * apps/mesh-segm-skel/mesh-max-curv.cc, + * apps/mesh-segm-skel/mesh-pinv-curv.cc, + * apps/mesh-segm-skel/mesh-segm.cc, + * apps/mesh-segm-skel/mesh-skel.cc, + * apps/mesh-segm-skel/test-mesh-max-curv.in, + * apps/mesh-segm-skel/test-mesh-segm.in: + Remove. + * apps/mesh-segm-skel/Makefile.am: Remove anything related to the + Trimesh library. + + 2012-06-15 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Remove dependencies on suppressed files. + + * doc/examples/tuto4_genericity_and_algorithms.cc: Do not include + mln/extract/green.hh. + + 2012-06-14 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Fix the distcheck target. + + * tests/linear/Makefile.am (MOSTLYCLEANFILES): + Add gaussian-out.pgm. + +2012-10-08 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Address g++-4.7 compilation errors. + + * apps/morphers/image2d-skel.hh (is_simple_2d::operator()): + Qualify a call to a base class member. + +2012-09-25 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Fix file names in apps/morphers/recorder-bft. + + * apps/morphers/recorder-bft.cc, + * apps/morphers/Makefile.am (recorder_SOURCES): + s/lena/picasso/. + +2012-06-21 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Improve the (movie) output of apps/morphers/iz. + + * apps/morphers/iz.cc (save_colorized): Skip consecutive identical + frames. + Swap the frame reconstruction and write operations, so that the + last frame is eventually saved. + * apps/morphers/Makefile.am (tmp_iz.avi): Use a speedup of 50 + instead of 10. + +2012-06-21 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Use the lazy recorder morpher in apps/morphers/iz. + + * apps/morphers/iz.cc (main): Here. + Save the sequence of recorder images as PNG images using Magick++. + (save_colorized): New function. + * apps/morphers/Makefile.am + (noinst_PROGRAMS, iz_SOURCES) [HAVE_MAGICKXX]: Build `iz' only if + Magick++ is available. + (iz_output.ppm) [HAVE_MAGICKXX]: Likewise. + (iz_CPPFLAGS, iz_LDFLAGS) [HAVE_MAGICKXX]: New. + (tmp_iz.avi) [HAVE_MAGICKXX]: New target. + (MOSTLYCLEANFILES): Add tmp_iz??????.png. + +2012-06-20 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Add rules to build and run apps/morphers/iz. + + * apps/morphers/Makefile.am (noinst_PROGRAMS): Add iz. + (iz_SOURCES): New. + (EXTRA_DIST): Add iz_input.pbm. + (iz_output.ppm): New target. + (MOSTLYCLEANFILES): Add tmp_clo.pgm, tmp_dmap.pgm, + tmp_ws_superpose.ppm, tmp_ws.ppm, tmp_lab.pgm, tmp_iz.pgm, + tmp_iz.ppm and tmp_iz_input.ppm. + +2012-06-20 Thierry Geraud &lt;thierry.geraud(a)lrde.epita.fr&gt; + + New example demonstrating the use of influence zones. + + * apps/morphers/iz.cc: New. + * apps/morphers/iz_input.pbm: New. + +2012-06-21 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + New ``lazy'' recorder morpher in apps/morpher. + + * apps/morphers/lazy_recorder.hh: New. + * apps/morphers/lazy_recorder.cc: New test. + * apps/morphers/Makefile.am (noinst_HEADERS): + Add lazy_recorder.hh. + (noinst_PROGRAMS): Add lazy_recorder. + (lazy_recorder_SOURCES): New. + (MOSTLYCLEANFILES): Add lena-fill-lazy??????.ppm. + +2012-06-21 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Render the recorder morpher more generic. + + * apps/morphers/recorder.hh (recorder<I>::sequence): Store a + sequence of concrete images. + Add missing inline keywords. + Improve the documentation. + +2011-11-28 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + New morpher example: recording a breadth-first thinning. + + * apps/morphers/recorder-bft.cc: New. + * apps/morphers/image2d-skel.hh: New. + * apps/morphers/Makefile.am (noinst_PROGRAMS): Add recorder-bft. + (recorder_wst_SOURCES): New. + (recorder_SOURCES, recorder_wst_SOURCES, mask_recorder_SOURCES): + Move recorder.hh... + (noinst_HEADERS): ...here (new variable). + (MOSTLYCLEANFILES): Add lena-bft??????.pbm. + +2011-11-24 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + New morpher example: recording a watershed transform. + + * apps/morphers/recorder-wst.cc: New. + * apps/morphers/Makefile.am (noinst_PROGRAMS): Add recorder-wst. + (recorder_wst_SOURCES): New. + (MOSTLYCLEANFILES): lena-wst??????.ppm. + +2011-11-24 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Work around decorated_image's lack of properties, for the recorder. + + * apps/morphers/recorder.hh + (trait::image_< decorated_image<I,D> >): Replace with.. + (trait::image_< decorated_image<I, recorder<I> > >): ...this. + Add a value_storage property. + (ch_value_< decorated_image< image_<I>, data_< recorder<I> > >, V >): + New trait, to handle changes of value types in images decorated + with a recorder. + * apps/morphers/mask+channel.cc, + * apps/morphers/mask+recorder.cc, + * apps/morphers/recorder.cc: + Simplify these programs thanks to the preceding changes. + +2011-11-24 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Fix the initialization of mln::decorated_image. + + * mln/tag/init.hh (tag::data_t): New tag type. + (tag::data): New tag. + * mln/core/image/imorph/decorated_image.hh + (init_(tag::data_t, D&, const decorated_image<I,D>&)) + (init_(tag::data_t, D&, const decorated_image<I,D2>&)) + (init_(tag::image_t, decorated_image<I,D>&, const J&)): + New functions. + +2011-11-18 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Simplify some apps/morpher programs using mln::make::box2d. + + * apps/morphers/mask+recorder.cc, + * apps/morphers/mask+channel.cc: + Here. + +2011-11-18 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Refactor apps/morphers. + + * apps/morphers/recorder.cc, + * apps/morphers/mask+recorder.cc: + Factor common parts... + * apps/morphers/recorder.hh: ...here (new file). + * apps/morphers/Makefile.am + (recorder_SOURCES, mask_recorder_SOURCES): Add recorder.hh. + +2011-11-14 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Add examples of morphers. + + * apps/morphers/mask+channel.cc, + * apps/morphers/recorder.cc, + * apps/morphers/mask+recorder.cc: + New. + * apps/morphers/Makefile.am: New. + * apps/Makefile.am (SUBDIRS): Add morphers. + +2011-11-24 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Honor a precondition in classification examples (ISMM 2009). + + * apps/papers/levillain.09.ismm/classif-graph.cc, + * apps/papers/levillain.09.ismm/classif-1complex.cc: + Do not use a value outside the range [0, nbasins] in `canvas_wst' + to prevent a failed precondition in labeling::colorize (when + NDEBUG is not defined). + Reported by David Coeurjolly <david.coeurjolly at liris.cnrs.fr>. + +2011-10-11 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Graph-based version of the classification example. + + * apps/papers/levillain.09.ismm/classif-graph.cc: New. + * apps/papers/levillain.09.ismm/Makefile.am (noinst_PROGRAMS): + Add classif-graph. + (classif_graph_SOURCES): New. + (noinst_DATA): Add classwst-graph.ppm. + (classwst-graph.ppm): New target. + +2011-10-10 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Rename apps/papers/levillain.09.ismm/classif.cc. + + * apps/papers/levillain.09.ismm/classif.cc: Rename as... + * apps/papers/levillain.09.ismm/classif-1complex.cc: ...this. + * apps/papers/levillain.09.ismm/Makefile.am + (noinst_PROGRAMS, noinst_DATA): s/classif/classif-1complex/. + (classif_SOURCES, classwst.pnm): Replace by... + (classif_1complex_SOURCES, classwst-1complex.ppm): ...these. + +2011-10-10 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Aesthetic changes in apps/papers/levillain.09.ismm/classif.cc. + + * apps/papers/levillain.09.ismm/classif.cc: Here. + Remove useless headers inclusions. + Adjust comments. + +2011-10-05 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Fix and clean up apps/papers/levillain.09.ismm/classif.cc. + + * apps/papers/levillain.09.ismm/classif.cc (main): Actually use + the chain() routine from chain.hh instead of ad hoc code. + Move code related to the construction of the 1-complex (graph) + image on which the processing chain is run... + (make_complex_image): ...here. + * apps/papers/levillain.09.ismm/Makefile.am (classwst.pnm): Change + the lambda (area) parameter to 4. + +2011-10-04 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Import the WST-based classification in apps/papers/levillain.09.ismm. + + * apps/papers/levillain.09.ismm/Makefile.am + (noinst_PROGRAMS): Add classif. + (classif_SOURCES): Add classif.cc + (dist_noinst_DATA): Add classseedsi.pbm. + (noinst_DATA): Add classwst.pnm. + (classwst.pnm): New target. + * apps/papers/levillain.09.ismm/classif.cc: New. + Copied and adapted from + sandbox/theo/esiee/laurent/presentation/classif.cc. + * apps/papers/levillain.09.ismm/classseedsi.pbm: New. + +2011-10-04 Roland Levillain &lt;roland(a)lrde.epita.fr&gt; + + Split apps/papers/levillain.09.ismm/graph.cc. + + * apps/papers/levillain.09.ismm/graph.cc: Misc. changes. + (mln::influence_zones) + (mln::io::neato::save): + Move functions... + * apps/papers/levillain.09.ismm/influence_zones.hh, + * apps/papers/levillain.09.ismm/io.hh: + ...here (new files). + * apps/papers/levillain.09.ismm/Makefile.am (noinst_HEADERS): + Add io.hh and influence_zones.hh + 2011-11-29 Guillaume Lazzara &lt;z(a)lrde.epita.fr&gt; Fix the initialization of all global constants (ticket #43) hooks/post-receive -- Olena, a generic and efficient image processing platform