Olena-patches May 2009

olena-patches@lrde.epita.fr

11 participants
312 discussions

Re: [Olena-patches] [Olena] #7: Miscellaneous tasks related to the Olena 1.0 release process

by Olena Trac

#7: Miscellaneous tasks related to the Olena 1.0 release process -----------------------+---------------------------------------------------- Reporter: levill_r | Owner: levill_r Type: task | Status: new Priority: major | Milestone: Olena 1.0 Component: Trac | Version: 1.0 Resolution: | Keywords: release NEWS dates copyright headers sandbox -----------------------+---------------------------------------------------- Changes (by levill_r): * component: Olena => Trac -- Ticket URL: <https://trac.lrde.org/olena/ticket/7#comment:12> Olena <http://olena.lrde.epita.fr> Olena, a generic and efficient C++ image processing library.

16 years

Re: [Olena-patches] [Olena] #7: Miscellaneous tasks related to the Olena 1.0 release process

by Olena Trac

#7: Miscellaneous tasks related to the Olena 1.0 release process -----------------------+---------------------------------------------------- Reporter: levill_r | Owner: levill_r Type: task | Status: new Priority: major | Milestone: Olena 1.0 Component: Olena | Version: 1.0 Resolution: | Keywords: release NEWS dates copyright headers sandbox -----------------------+---------------------------------------------------- Changes (by levill_r): * component: other => Olena -- Ticket URL: <https://trac.lrde.org/olena/ticket/7#comment:11> Olena <http://olena.lrde.epita.fr> Olena, a generic and efficient C++ image processing library.

16 years

Re: [Olena-patches] [Olena] #32: Improve the integration of Doxygen into the (autoconfiscated) package

by Olena Trac

#32: Improve the integration of Doxygen into the (autoconfiscated) package --------------------------+------------------------------------------------- Reporter: levill_r | Owner: levill_r Type: enhancement | Status: new Priority: trivial | Milestone: Olena 1.0 Component: Olena | Version: 1.0 Resolution: | Keywords: --------------------------+------------------------------------------------- Changes (by levill_r): * component: other => Olena -- Ticket URL: <https://trac.lrde.org/olena/ticket/32#comment:3> Olena <http://olena.lrde.epita.fr> Olena, a generic and efficient C++ image processing library.

16 years

[Olena] #159: Distribute SWIG wrappers

by Olena

#159: Distribute SWIG wrappers -------------------------+-------------------------------------------------- Reporter: levill_r | Owner: Olena Team Type: enhancement | Status: new Priority: minor | Milestone: Olena 1.0 Component: Milena | Version: 1.0 Keywords: | -------------------------+-------------------------------------------------- According to Alexandre Hamez, files generated by `swig` (e.g., `*.py` and `*-wrap.cc`) are portable. We should distribute them, as * it would save users wanting to use Swilena some time; * it would free them to have SWIG to compile Swilena. To do: * distribute these files (remove `nodist_` prefixes); * ensure they're available at distribution time (use `dist-hook` in `Makefile.am`); * add generated files to `MAINTAINERCLEANFILES`; * adjust `configure.ac`? (see what Alexandre uses). -- Ticket URL: <https://trac.lrde.org/olena/ticket/159> Olena <http://olena.lrde.epita.fr> Olena, a generic and efficient C++ image processing library.

16 years

3790: Add morpho reconstruction by_dilation union_find algorithm.

by Thierry Geraud

https://svn.lrde.epita.fr/svn/oln/trunk/milena Index: ChangeLog from Thierry Geraud <thierry.geraud(a)lrde.epita.fr> Add morpho reconstruction by_dilation union_find algorithm. * mln/morpho/reconstruction, * mln/morpho/reconstruction/by_dilation, * tests/morpho/reconstruction, * tests/morpho/reconstruction/by_dilation: New directories. * sandbox/theo/Rd/union_find.hh: Copy to... * mln/morpho/reconstruction/by_dilation/union_find.hh: ...this new file. Update. * mln/morpho/all.hh: Fix comments. * mln/morpho/reconstruction/all.hh: New. * mln/morpho/reconstruction/by_dilation/all.hh: New. * tests/morpho/reconstruction/Makefile.am: New. * tests/morpho/reconstruction/by_dilation/Makefile.am: New. * tests/morpho/reconstruction/by_dilation/union_find.cc: New. * tests/morpho/Makefile.am: Update. mln/morpho/all.hh | 9 mln/morpho/reconstruction/all.hh | 57 +++ mln/morpho/reconstruction/by_dilation/all.hh | 59 +++ mln/morpho/reconstruction/by_dilation/union_find.hh | 272 ++++++++++++------ tests/morpho/Makefile.am | 1 tests/morpho/reconstruction/Makefile.am | 11 tests/morpho/reconstruction/by_dilation/Makefile.am | 15 tests/morpho/reconstruction/by_dilation/union_find.cc | 64 ++++ 8 files changed, 408 insertions(+), 80 deletions(-) Index: mln/morpho/all.hh --- mln/morpho/all.hh (revision 3789) +++ mln/morpho/all.hh (working copy) @@ -31,22 +31,22 @@ /// \file mln/morpho/all.hh /// -/// File that includes all morpho-related routines. +/// File that includes all mathematical morphology routines. namespace mln { - /// Namespace of morphological image processing routines. + /// Namespace of mathematical morphology routines. namespace morpho { - /// Namespace of morphological image processing routines + /// Namespace of mathematical morphology routines /// implementations. namespace impl { - /// Namespace of morphological image processing routines + /// Namespace of mathematical morphology routines /// generic implementations. namespace generic {} @@ -85,6 +85,7 @@ # include <mln/morpho/closing/all.hh> # include <mln/morpho/elementary/all.hh> # include <mln/morpho/opening/all.hh> +# include <mln/morpho/reconstruction/all.hh> # include <mln/morpho/tree/all.hh> # include <mln/morpho/watershed/all.hh> Index: mln/morpho/reconstruction/all.hh --- mln/morpho/reconstruction/all.hh (revision 0) +++ mln/morpho/reconstruction/all.hh (revision 0) @@ -0,0 +1,57 @@ +// Copyright (C) 2009 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_MORPHO_RECONSTRUCTION_ALL_HH +# define MLN_MORPHO_RECONSTRUCTION_ALL_HH + + +/// \file mln/morpho/reconstruction/all.hh +/// +/// File that includes all morphological reconstruction routines. + + +namespace mln +{ + + namespace morpho + { + + /// Namespace of morphological reconstruction routines. + namespace reconstruction + {} + + } +} + + +// Sub-directories. + +# include <mln/morpho/reconstruction/by_dilation/all.hh> +// ... + + +#endif // ! MLN_MORPHO_RECONSTRUCTION_ALL_HH Index: mln/morpho/reconstruction/by_dilation/union_find.hh --- mln/morpho/reconstruction/by_dilation/union_find.hh (revision 0) +++ mln/morpho/reconstruction/by_dilation/union_find.hh (working copy) @@ -1,4 +1,5 @@ -// Copyright (C) 2007, 2008 EPITA Research and Development Laboratory +// Copyright (C) 2007, 2008, 2009 EPITA Research and Development +// Laboratory // // This file is part of the Olena Library. This library is free // software; you can redistribute it and/or modify it under the terms @@ -25,10 +26,14 @@ // reasons why the executable file might be covered by the GNU General // Public License. -#ifndef MLN_MORPHO_RD_UNION_FIND_HH -# define MLN_MORPHO_RD_UNION_FIND_HH +#ifndef MLN_MORPHO_RECONSTRUCTION_BY_DILATION_UNION_FIND_HH +# define MLN_MORPHO_RECONSTRUCTION_BY_DILATION_UNION_FIND_HH -# include "utils.hh" +# include <vector> +# include <mln/core/concept/image.hh> +# include <mln/core/concept/neighborhood.hh> +# include <mln/level/compare.hh> +# include <mln/level/sort_psites.hh> namespace mln @@ -37,130 +42,245 @@ namespace morpho { - namespace Rd + namespace reconstruction { + namespace by_dilation + { + + + template <typename I, typename J, typename N> + mln_concrete(I) + union_find(const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh); + + +# ifndef MLN_INCLUDE_ONLY - template <typename I, typename N> - struct union_find_t + + // Tests. + + namespace internal { - typedef mln_site(I) point; - typedef mln_value(I) value; - // in: - const I f, g; - N nbh; + template <typename I, typename J, typename N> + inline + void + union_find_tests(const Image& f_, const Image<J>& g_, + const Neighborhood<N>& nbh_) + { + const I& f = exact(f_); + const J& g = exact(g_); + const N& nbh = exact(nbh_); + + mln_precondition(f.is_valid()); + mln_precondition(g.is_valid()); + mln_precondition(nbh.is_valid()); + + mln_precondition(f.domain() == g.domain()); // FIXME: Relax? + mln_precondition(f <= g); + + // mlc_equal(mln_value(I), mln_value(J))::check(); // FIXME: Too strong! + // FIXME: Also check that we have a total ordering for values. + + (void) f; + (void) g; + (void) nbh; + } + - // out: - I o; - // aux: - std::vector<point> S; +// template <typename P> +// inline +// bool is_proc(const P& n, const P& p) const +// { +// return g(n) > g(p) or (g(n) == g(p) && +// util::ord_strict(n, p)); +// } + + template <typename Par> + inline + mln_site(Par) find_root(Par& parent, mln_site(Par) x) + { + if (parent(x) == x) + return x; + else + return parent(x) = find_root(parent, parent(x)); + } + + + } // end of namespace mln::morpho::reconstruction::by_dilation::internal + + + // Implementations. + + namespace impl + { + + namespace generic + { + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find(const Image& f_, const Image<J>& g_, + const Neighborhood<N>& nbh_) + { + trace::entering("morpho::reconstruction::by_dilation::impl::generic::union_find"); + + const I& f = exact(f_); + const J& g = exact(g_); + const N& nbh = exact(nbh_); + + internal::union_find_tests(f, g, nbh); + + + typedef mln_site(I) P; + typedef mln_value(I) V; + + // Auxiliary data. + p_array s; mln_ch_value(I, bool) deja_vu; - mln_ch_value(I, point) parent; + mln_ch_value(I, P) parent; + mln_concrete(I) output; - union_find_t(const I& f, const I& g, const N& nbh) - : f(f), g(g), nbh(nbh) + // Initialization. { - initialize(o, f); + initialize(output, f); + data::paste(f, output); initialize(parent, f); initialize(deja_vu, f); - - // init - data::fill(deja_vu, false); - S = histo_reverse_sort(g); - data::paste(f, o); // Replace: for all p, make_set(p) { data(p) = f(p) } - // first pass + s = level::sort_psites_decreasing(g); + } - for (unsigned i = 0; i < S.size(); ++i) + // First pass. { - point p = S[i]; - make_set(p); + for (unsigned i = 0; i < s.nsites(); ++i) + { + P p = s[i]; + parent(p) = p; // Make-Set. mln_niter(N) n(nbh, p); for_all(n) { - if (f.has(n)) - mln_invariant(deja_vu(n) == is_proc(n, p)); - if (f.has(n) && deja_vu(n)) - do_union(n, p); + // if (f.domain().has(n)) + // mln_invariant(deja_vu(n) == is_proc(n, p)); + if (f.domain().has(n) && deja_vu(n)) + { + // Do-Union. + P r = internal::find_root(parent, n); + if (r != p) + { + if (g(r) == g(p) || g(p) >= output(r)) // Equivalence test. + { + parent(r) = p; + if (output(r) > output(p)) + output(p) = output(r); // Increasing criterion. + } + else + output(p) = mln_max(V); + } + } } deja_vu(p) = true; } + } - // second pass - - for (int i = S.size() - 1; i >= 0; --i) + // Second pass. + { + for (int i = s.nsites() - 1; i >= 0; --i) { - point p = S[i]; + P p = s[i]; if (parent(p) == p) { - if (o(p) == mln_max(value)) - o(p) = g(p); + if (output(p) == mln_max(V)) + output(p) = g(p); } else - o(p) = o(parent(p)); + output(p) = output(parent(p)); } - } - bool is_proc(const point& n, const point& p) const - { - return g(n) > g(p) or (g(n) == g(p) && - util::ord_strict(n, p)); + mln_postcondition(output >= f); + mln_postcondition(output <= g); + + trace::exiting("morpho::reconstruction::by_dilation::impl::generic::union_find"); + return output; } - void make_set(const point& p) + + } // end of namespace mln::morpho::reconstruction::by_dilation::impl::generic + + } // end of namespace mln::morpho::reconstruction::by_dilation::impl + + + // Dispatch. + + namespace internal { - parent(p) = p; - // was: data(p) = f(p); - // now: in "initialization" - } - point find_root(const point& x) + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find_dispatch(trait::image::kind::logic, + const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) { - if (parent(x) == x) - return x; - else - return parent(x) = find_root(parent(x)); + // FIXME: Not yet implemented. } - void do_union(const point& n, const point& p) - { - point r = find_root(n); - if (r != p) + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find_dispatch(trait::image::kind::any, + const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) { - // NEW: o replaces data + return impl::generic::union_find(f, g, nbh); + } - if (g(r) == g(p) or g(p) >= o(r)) // equiv test + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find_dispatch(const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) { - parent(r) = p; - if (o(r) > o(p)) - o(p) = o(r); // increasing criterion - } - else - o(p) = mln_max(value); - } + return union_find_dispatch(mln_trait_image_kind(I)(), + f, g, nbh); } - }; + } // end of namespace mln::morpho::reconstruction::by_dilation::internal - template <typename I, typename N> - I union_find(const I& f, const I& g, const N& nbh) + // Facade. + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find(const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) { - mln_precondition(f <= g); - union_find_t<I, N> run(f, g, nbh); - return run.o; + trace::entering("morpho::reconstruction::by_dilation::union_find"); + + internal::union_find_tests(f, g, nbh); + + mln_concrete(I) output; + output = internal::union_find_dispatch(f, g, nbh); + + trace::exiting("morpho::reconstruction::by_dilation::union_find"); + return output; } +# endif // ! MLN_INCLUDE_ONLY + + } // end of namespace mln::morpho::reconstruction::by_dilation - } // end of namespace mln::morpho::Rd + } // end of namespace mln::morpho::reconstruction } // end of namespace mln::morpho } // end of namespace mln -#endif // ! MLN_MORPHO_RD_UNION_FIND_HH +#endif // ! MLN_MORPHO_RECONSTRUCTION_BY_DILATION_UNION_FIND_HH Property changes on: mln/morpho/reconstruction/by_dilation/union_find.hh ___________________________________________________________________ Added: svn:mergeinfo Index: mln/morpho/reconstruction/by_dilation/all.hh --- mln/morpho/reconstruction/by_dilation/all.hh (revision 0) +++ mln/morpho/reconstruction/by_dilation/all.hh (revision 0) @@ -0,0 +1,59 @@ +// Copyright (C) 2009 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_MORPHO_RECONSTRUCTION_BY_DILATION_ALL_HH +# define MLN_MORPHO_RECONSTRUCTION_BY_DILATION_ALL_HH + + +/// \file mln/morpho/reconstruction by dilation/all.hh +/// +/// File that includes all morphological reconstruction by dilation routines. + + +namespace mln +{ + + namespace morpho + { + + namespace reconstruction + { + + /// Namespace of morphological reconstruction by dilation routines. + namespace by_dilation + {} + + } + } +} + + +# include <mln/morpho/reconstruction/by_dilation/union_find.hh> +// ... + + +#endif // ! MLN_MORPHO_RECONSTRUCTION_BY_DILATION_ALL_HH Index: tests/morpho/reconstruction/Makefile.am --- tests/morpho/reconstruction/Makefile.am (revision 0) +++ tests/morpho/reconstruction/Makefile.am (revision 0) @@ -0,0 +1,11 @@ +## Process this file through Automake to create Makefile.in -*- Makefile -*- + +include $(top_srcdir)/milena/tests/tests.mk + +SUBDIRS = \ + by_dilation + + +TESTS = $(check_PROGRAMS) + + Index: tests/morpho/reconstruction/by_dilation/Makefile.am --- tests/morpho/reconstruction/by_dilation/Makefile.am (revision 0) +++ tests/morpho/reconstruction/by_dilation/Makefile.am (revision 0) @@ -0,0 +1,15 @@ +## Process this file through Automake to create Makefile.in -*- Makefile -*- + +include $(top_srcdir)/milena/tests/tests.mk + + +check_PROGRAMS = \ + union_find + + +union_find_SOURCES = union_find.cc + + +TESTS = $(check_PROGRAMS) + + Index: tests/morpho/reconstruction/by_dilation/union_find.cc --- tests/morpho/reconstruction/by_dilation/union_find.cc (revision 0) +++ tests/morpho/reconstruction/by_dilation/union_find.cc (revision 0) @@ -0,0 +1,64 @@ +// Copyright (C) 2009 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file tests/morpho/reconstruction/by_dilation/union_find.cc +/// +/// Test on mln::morpho::reconstruction::by_dilation::union_find + +#include <mln/core/image/image2d.hh> +#include <mln/core/alias/neighb2d.hh> +#include <mln/pw/all.hh> + +#include <mln/io/pgm/load.hh> +#include <mln/value/int_u8.hh> +#include <mln/level/compare.hh> + +#include <mln/morpho/reconstruction/by_dilation/union_find.hh> + +#include "tests/data.hh" + + + +int main() +{ + using namespace mln; + using namespace morpho::reconstruction::by_dilation; + + image2d<value::int_u8> lena, lena_2, out; + io::pgm::load(lena, MLN_IMG_DIR "/tiny.pgm"); + + { + out = union_find(lena, lena, c4()); + mln_assertion(out == lena); + } + + { + initialize(lena_2, lena); + data::fill(lena_2, lena); + out = union_find(lena_2, lena, c4()); + } +} Index: tests/morpho/Makefile.am --- tests/morpho/Makefile.am (revision 3789) +++ tests/morpho/Makefile.am (working copy) @@ -8,6 +8,7 @@ closing \ elementary \ opening \ + reconstruction \ tree \ watershed

16 years

[PATCH 29/31] Add morpho reconstruction by_dilation union_find algorithm.

by Roland Levillain

* mln/morpho/reconstruction, * mln/morpho/reconstruction/by_dilation, * tests/morpho/reconstruction, * tests/morpho/reconstruction/by_dilation: New directories. * sandbox/theo/Rd/union_find.hh: Copy to... * mln/morpho/reconstruction/by_dilation/union_find.hh: ...this new file. Update. * mln/morpho/all.hh: Fix comments. * mln/morpho/reconstruction/all.hh: New. * mln/morpho/reconstruction/by_dilation/all.hh: New. * tests/morpho/reconstruction/Makefile.am: New. * tests/morpho/reconstruction/by_dilation/Makefile.am: New. * tests/morpho/reconstruction/by_dilation/union_find.cc: New. * tests/morpho/Makefile.am: Update. --- milena/ChangeLog | 21 ++ milena/mln/morpho/all.hh | 9 +- milena/mln/morpho/reconstruction/all.hh | 57 ++++ .../mln/morpho/reconstruction/by_dilation/all.hh | 59 ++++ .../reconstruction/by_dilation/union_find.hh | 286 ++++++++++++++++++++ milena/tests/morpho/Makefile.am | 1 + milena/tests/morpho/reconstruction/Makefile.am | 11 + .../morpho/reconstruction/by_dilation/Makefile.am | 15 + .../reconstruction/by_dilation/union_find.cc | 64 +++++ 9 files changed, 519 insertions(+), 4 deletions(-) create mode 100644 milena/mln/morpho/reconstruction/all.hh create mode 100644 milena/mln/morpho/reconstruction/by_dilation/all.hh create mode 100644 milena/mln/morpho/reconstruction/by_dilation/union_find.hh create mode 100644 milena/tests/morpho/reconstruction/Makefile.am create mode 100644 milena/tests/morpho/reconstruction/by_dilation/Makefile.am create mode 100644 milena/tests/morpho/reconstruction/by_dilation/union_find.cc diff --git a/milena/ChangeLog b/milena/ChangeLog index b26865f..34bb8a0 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,3 +1,24 @@ +2009-05-14 Thierry Geraud <thierry.geraud(a)lrde.epita.fr> + + Add morpho reconstruction by_dilation union_find algorithm. + + * mln/morpho/reconstruction, + * mln/morpho/reconstruction/by_dilation, + * tests/morpho/reconstruction, + * tests/morpho/reconstruction/by_dilation: New directories. + + * sandbox/theo/Rd/union_find.hh: Copy to... + * mln/morpho/reconstruction/by_dilation/union_find.hh: ...this new file. + Update. + + * mln/morpho/all.hh: Fix comments. + * mln/morpho/reconstruction/all.hh: New. + * mln/morpho/reconstruction/by_dilation/all.hh: New. + * tests/morpho/reconstruction/Makefile.am: New. + * tests/morpho/reconstruction/by_dilation/Makefile.am: New. + * tests/morpho/reconstruction/by_dilation/union_find.cc: New. + * tests/morpho/Makefile.am: Update. + 2009-05-12 Thierry Geraud <thierry.geraud(a)lrde.epita.fr> De-activate hsl stuff in value rgb. diff --git a/milena/mln/morpho/all.hh b/milena/mln/morpho/all.hh index d420dd1..8d7425a 100644 --- a/milena/mln/morpho/all.hh +++ b/milena/mln/morpho/all.hh @@ -31,22 +31,22 @@ /// \file mln/morpho/all.hh /// -/// File that includes all morpho-related routines. +/// File that includes all mathematical morphology routines. namespace mln { - /// Namespace of morphological image processing routines. + /// Namespace of mathematical morphology routines. namespace morpho { - /// Namespace of morphological image processing routines + /// Namespace of mathematical morphology routines /// implementations. namespace impl { - /// Namespace of morphological image processing routines + /// Namespace of mathematical morphology routines /// generic implementations. namespace generic {} @@ -85,6 +85,7 @@ namespace mln # include <mln/morpho/closing/all.hh> # include <mln/morpho/elementary/all.hh> # include <mln/morpho/opening/all.hh> +# include <mln/morpho/reconstruction/all.hh> # include <mln/morpho/tree/all.hh> # include <mln/morpho/watershed/all.hh> diff --git a/milena/mln/morpho/reconstruction/all.hh b/milena/mln/morpho/reconstruction/all.hh new file mode 100644 index 0000000..4b7db9e --- /dev/null +++ b/milena/mln/morpho/reconstruction/all.hh @@ -0,0 +1,57 @@ +// Copyright (C) 2009 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_MORPHO_RECONSTRUCTION_ALL_HH +# define MLN_MORPHO_RECONSTRUCTION_ALL_HH + + +/// \file mln/morpho/reconstruction/all.hh +/// +/// File that includes all morphological reconstruction routines. + + +namespace mln +{ + + namespace morpho + { + + /// Namespace of morphological reconstruction routines. + namespace reconstruction + {} + + } +} + + +// Sub-directories. + +# include <mln/morpho/reconstruction/by_dilation/all.hh> +// ... + + +#endif // ! MLN_MORPHO_RECONSTRUCTION_ALL_HH diff --git a/milena/mln/morpho/reconstruction/by_dilation/all.hh b/milena/mln/morpho/reconstruction/by_dilation/all.hh new file mode 100644 index 0000000..d88213d --- /dev/null +++ b/milena/mln/morpho/reconstruction/by_dilation/all.hh @@ -0,0 +1,59 @@ +// Copyright (C) 2009 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_MORPHO_RECONSTRUCTION_BY_DILATION_ALL_HH +# define MLN_MORPHO_RECONSTRUCTION_BY_DILATION_ALL_HH + + +/// \file mln/morpho/reconstruction by dilation/all.hh +/// +/// File that includes all morphological reconstruction by dilation routines. + + +namespace mln +{ + + namespace morpho + { + + namespace reconstruction + { + + /// Namespace of morphological reconstruction by dilation routines. + namespace by_dilation + {} + + } + } +} + + +# include <mln/morpho/reconstruction/by_dilation/union_find.hh> +// ... + + +#endif // ! MLN_MORPHO_RECONSTRUCTION_BY_DILATION_ALL_HH diff --git a/milena/mln/morpho/reconstruction/by_dilation/union_find.hh b/milena/mln/morpho/reconstruction/by_dilation/union_find.hh new file mode 100644 index 0000000..4a7dec0 --- /dev/null +++ b/milena/mln/morpho/reconstruction/by_dilation/union_find.hh @@ -0,0 +1,286 @@ +// Copyright (C) 2007, 2008, 2009 EPITA Research and Development +// Laboratory +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_MORPHO_RECONSTRUCTION_BY_DILATION_UNION_FIND_HH +# define MLN_MORPHO_RECONSTRUCTION_BY_DILATION_UNION_FIND_HH + +# include <vector> +# include <mln/core/concept/image.hh> +# include <mln/core/concept/neighborhood.hh> +# include <mln/level/compare.hh> +# include <mln/level/sort_psites.hh> + + +namespace mln +{ + + namespace morpho + { + + namespace reconstruction + { + + namespace by_dilation + { + + + template <typename I, typename J, typename N> + mln_concrete(I) + union_find(const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh); + + +# ifndef MLN_INCLUDE_ONLY + + + // Tests. + + namespace internal + { + + template <typename I, typename J, typename N> + inline + void + union_find_tests(const Image& f_, const Image<J>& g_, + const Neighborhood<N>& nbh_) + { + const I& f = exact(f_); + const J& g = exact(g_); + const N& nbh = exact(nbh_); + + mln_precondition(f.is_valid()); + mln_precondition(g.is_valid()); + mln_precondition(nbh.is_valid()); + + mln_precondition(f.domain() == g.domain()); // FIXME: Relax? + mln_precondition(f <= g); + + // mlc_equal(mln_value(I), mln_value(J))::check(); // FIXME: Too strong! + // FIXME: Also check that we have a total ordering for values. + + (void) f; + (void) g; + (void) nbh; + } + + + +// template <typename P> +// inline +// bool is_proc(const P& n, const P& p) const +// { +// return g(n) > g(p) or (g(n) == g(p) && +// util::ord_strict(n, p)); +// } + + template <typename Par> + inline + mln_site(Par) find_root(Par& parent, mln_site(Par) x) + { + if (parent(x) == x) + return x; + else + return parent(x) = find_root(parent, parent(x)); + } + + + } // end of namespace mln::morpho::reconstruction::by_dilation::internal + + + // Implementations. + + namespace impl + { + + namespace generic + { + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find(const Image& f_, const Image<J>& g_, + const Neighborhood<N>& nbh_) + { + trace::entering("morpho::reconstruction::by_dilation::impl::generic::union_find"); + + const I& f = exact(f_); + const J& g = exact(g_); + const N& nbh = exact(nbh_); + + internal::union_find_tests(f, g, nbh); + + + typedef mln_site(I) P; + typedef mln_value(I) V; + + // Auxiliary data. + p_array s; + mln_ch_value(I, bool) deja_vu; + mln_ch_value(I, P) parent; + mln_concrete(I) output; + + // Initialization. + { + initialize(output, f); + data::paste(f, output); + initialize(parent, f); + initialize(deja_vu, f); + data::fill(deja_vu, false); + + s = level::sort_psites_decreasing(g); + } + + // First pass. + { + for (unsigned i = 0; i < s.nsites(); ++i) + { + P p = s[i]; + parent(p) = p; // Make-Set. + mln_niter(N) n(nbh, p); + for_all(n) + { + // if (f.domain().has(n)) + // mln_invariant(deja_vu(n) == is_proc(n, p)); + if (f.domain().has(n) && deja_vu(n)) + { + // Do-Union. + P r = internal::find_root(parent, n); + if (r != p) + { + if (g(r) == g(p) || g(p) >= output(r)) // Equivalence test. + { + parent(r) = p; + if (output(r) > output(p)) + output(p) = output(r); // Increasing criterion. + } + else + output(p) = mln_max(V); + } + } + } + deja_vu(p) = true; + } + } + + // Second pass. + { + for (int i = s.nsites() - 1; i >= 0; --i) + { + P p = s[i]; + if (parent(p) == p) + { + if (output(p) == mln_max(V)) + output(p) = g(p); + } + else + output(p) = output(parent(p)); + } + } + + mln_postcondition(output >= f); + mln_postcondition(output <= g); + + trace::exiting("morpho::reconstruction::by_dilation::impl::generic::union_find"); + return output; + } + + + } // end of namespace mln::morpho::reconstruction::by_dilation::impl::generic + + } // end of namespace mln::morpho::reconstruction::by_dilation::impl + + + // Dispatch. + + namespace internal + { + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find_dispatch(trait::image::kind::logic, + const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) + { + // FIXME: Not yet implemented. + } + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find_dispatch(trait::image::kind::any, + const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) + { + return impl::generic::union_find(f, g, nbh); + } + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find_dispatch(const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) + { + return union_find_dispatch(mln_trait_image_kind(I)(), + f, g, nbh); + } + + } // end of namespace mln::morpho::reconstruction::by_dilation::internal + + + // Facade. + + template <typename I, typename J, typename N> + inline + mln_concrete(I) + union_find(const Image& f, const Image<J>& g, + const Neighborhood<N>& nbh) + { + trace::entering("morpho::reconstruction::by_dilation::union_find"); + + internal::union_find_tests(f, g, nbh); + + mln_concrete(I) output; + output = internal::union_find_dispatch(f, g, nbh); + + trace::exiting("morpho::reconstruction::by_dilation::union_find"); + return output; + } + +# endif // ! MLN_INCLUDE_ONLY + + } // end of namespace mln::morpho::reconstruction::by_dilation + + } // end of namespace mln::morpho::reconstruction + + } // end of namespace mln::morpho + +} // end of namespace mln + + +#endif // ! MLN_MORPHO_RECONSTRUCTION_BY_DILATION_UNION_FIND_HH diff --git a/milena/tests/morpho/Makefile.am b/milena/tests/morpho/Makefile.am index a4b7c6b..f66924d 100644 --- a/milena/tests/morpho/Makefile.am +++ b/milena/tests/morpho/Makefile.am @@ -8,6 +8,7 @@ SUBDIRS = \ closing \ elementary \ opening \ + reconstruction \ tree \ watershed diff --git a/milena/tests/morpho/reconstruction/Makefile.am b/milena/tests/morpho/reconstruction/Makefile.am new file mode 100644 index 0000000..1cfac92 --- /dev/null +++ b/milena/tests/morpho/reconstruction/Makefile.am @@ -0,0 +1,11 @@ +## Process this file through Automake to create Makefile.in -*- Makefile -*- + +include $(top_srcdir)/milena/tests/tests.mk + +SUBDIRS = \ + by_dilation + + +TESTS = $(check_PROGRAMS) + + diff --git a/milena/tests/morpho/reconstruction/by_dilation/Makefile.am b/milena/tests/morpho/reconstruction/by_dilation/Makefile.am new file mode 100644 index 0000000..fd83a0b --- /dev/null +++ b/milena/tests/morpho/reconstruction/by_dilation/Makefile.am @@ -0,0 +1,15 @@ +## Process this file through Automake to create Makefile.in -*- Makefile -*- + +include $(top_srcdir)/milena/tests/tests.mk + + +check_PROGRAMS = \ + union_find + + +union_find_SOURCES = union_find.cc + + +TESTS = $(check_PROGRAMS) + + diff --git a/milena/tests/morpho/reconstruction/by_dilation/union_find.cc b/milena/tests/morpho/reconstruction/by_dilation/union_find.cc new file mode 100644 index 0000000..46631f0 --- /dev/null +++ b/milena/tests/morpho/reconstruction/by_dilation/union_find.cc @@ -0,0 +1,64 @@ +// Copyright (C) 2009 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file tests/morpho/reconstruction/by_dilation/union_find.cc +/// +/// Test on mln::morpho::reconstruction::by_dilation::union_find + +#include <mln/core/image/image2d.hh> +#include <mln/core/alias/neighb2d.hh> +#include <mln/pw/all.hh> + +#include <mln/io/pgm/load.hh> +#include <mln/value/int_u8.hh> +#include <mln/level/compare.hh> + +#include <mln/morpho/reconstruction/by_dilation/union_find.hh> + +#include "tests/data.hh" + + + +int main() +{ + using namespace mln; + using namespace morpho::reconstruction::by_dilation; + + image2d<value::int_u8> lena, lena_2, out; + io::pgm::load(lena, MLN_IMG_DIR "/tiny.pgm"); + + { + out = union_find(lena, lena, c4()); + mln_assertion(out == lena); + } + + { + initialize(lena_2, lena); + data::fill(lena_2, lena); + out = union_find(lena_2, lena, c4()); + } +} -- 1.6.1.2

16 years

r3789: Add a morpho transformation before edges computation

by Fabien Freling

URL: https://svn.lrde.epita.fr/svn/oln/trunk/milena/sandbox ChangeLog: 2009-05-12 Fabien Freling <fabien.freling(a)lrde.epita.fr> Add a morpho transformation before edges computation. * fabien/igr/smooth_fixed_seg/main.cc: New edge computation, using morpho transformations. --- main.cc | 177 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 177 insertions(+) Index: trunk/milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc =================================================================== --- trunk/milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc (revision 0) +++ trunk/milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc (revision 3789) @@ -0,0 +1,177 @@ +#include <algorithm> + +#include <mln/core/image/image1d.hh> +#include <mln/core/alias/window1d.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/alias/neighb2d.hh> +#include <mln/core/image/image3d.hh> +#include <mln/core/image/slice_image.hh> +#include <mln/core/image/image_if.hh> +#include <mln/core/routine/duplicate.hh> +#include <mln/core/routine/extend.hh> +#include <mln/core/var.hh> + +#include <mln/io/dump/all.hh> +#include <mln/io/pgm/save.hh> +#include <mln/io/ppm/save.hh> + +#include <mln/value/int_u8.hh> +#include <mln/value/int_u12.hh> +#include <mln/value/label_16.hh> + +#include <mln/accu/sum.hh> +#include <mln/accu/mean.hh> +#include <mln/accu/image/all.hh> +#include <mln/data/fill.hh> +#include <mln/data/paste.hh> +#include <mln/convert/from_to.hh> +#include <mln/labeling/wrap.hh> +#include <mln/level/compute.hh> +#include <mln/level/convert.hh> +#include <mln/level/stretch.hh> +#include <mln/make/image2d.hh> +#include <mln/math/diff_abs.hh> +#include <mln/morpho/dilation.hh> +#include <mln/morpho/erosion.hh> +#include <mln/morpho/closing/structural.hh> +#include <mln/morpho/opening/structural.hh> +#include <mln/morpho/elementary/gradient.hh> +#include <mln/morpho/watershed/flooding.hh> +#include <mln/pw/all.hh> +#include <mln/util/array.hh> + +#include <mln/world/inter_pixel/display_edge.hh> +#include <mln/world/inter_pixel/compute.hh> +#include <mln/world/inter_pixel/immerse.hh> +#include <mln/world/inter_pixel/neighb2d.hh> +#include <mln/world/inter_pixel/all.hh> + +#include <mln/labeling/colorize.hh> +#include <mln/debug/println.hh> +#include <mln/trace/quiet.hh> + + +using namespace mln; +using value::int_u8; +using value::int_u12; +using value::label_16; + + + + +// Mean image. +//------------ +template <typename V> +inline +image1d<float> +mean_image(image1d<V>& input) +{ + window1d win_1; + win_1 + .insert(-2) + .insert(-1) + .insert(0) + .insert(1) + .insert(2); + + image1d<V> closing_ima = morpho::closing::structural(input, win_1); + image1d<V> opening_ima = morpho::opening::structural(input, win_1); + + image1d<accu::mean<float> > result; + + initialize(result, input); + + accu::image::init(result); + accu::image::take(result, closing_ima); + accu::image::take(result, opening_ima); + + return accu::image::to_result(result); +} + + + +// Distance function. +//------------------- + +struct dist_t : Function_vv2v<dist_t> +{ + typedef float result; + + template <typename V> + float operator()(util::array<V> v1, util::array<V> v2) const + { + float res = 0.f; + + accu::sum<V> accu_sum; + + image1d<V> tmp_ima; + convert::from_to(v1, tmp_ima); + image1d<float> morpho_ima = mean_image(tmp_ima); + float sum_v1 = level::compute(accu_sum, morpho_ima); + + image1d<V> tmp_ima2; + convert::from_to(v2, tmp_ima2); + image1d<float> morpho_ima2 = mean_image(tmp_ima2); + float sum_v2 = level::compute(accu_sum, morpho_ima2); + + mln_piter(image1d<float>) p(morpho_ima.domain()); + for_all(p) + res += std::min(morpho_ima(p), morpho_ima2(p)); + + res /= std::max(sum_v1, sum_v2); + + return 1 - res; + } +} dist; + + + + + + + + +int usage(const char* bin) +{ + std::cout << "Usage: " << bin << " input.dump" << std::endl; + return 1; +} + +int main(int argc, char* argv[]) +{ + if (argc != 2) + return usage(argv[0]); + + + // Initialization. + image3d<int_u12> input; + io::dump::load(input, argv[1]); + typedef image2d<util::array<int_u12> > I; + I ima_arr; + initialize(ima_arr, slice(input, 0)); + for (unsigned int i = 0; i < input.nslices(); ++i) + { + image2d<int_u12> tmp_slice = duplicate(slice(input, i)); + mln_piter_(image2d<int_u12>) p(tmp_slice.domain()); + for_all(p) + ima_arr(p).append(tmp_slice(p)); + } + + + // Edges image creation. + //image2d<float> edges = dist_on_edges(ima_arr); + typedef image_if<I, world::inter_pixel::is_pixel> Ix; + Ix imax = world::inter_pixel::immerse(ima_arr); + + // Edges distance computation. + mln_VAR(edges, world::inter_pixel::compute(imax, dist)); + + { + // Display. + mln_VAR(display_ima, world::inter_pixel::display_edge(edges.unmorph_(), 0.0, 3)); + io::pgm::save(level::stretch(int_u8(), display_ima), "edges.pgm"); + } + + + return 0; +}

16 years

[PATCH 28/31] Add a morpho transformation before edges computation.

by Roland Levillain

* fabien/igr/smooth_fixed_seg/main.cc: New edge computation, using morpho transformations. --- milena/sandbox/ChangeLog | 6 + milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc | 177 ++++++++++++++++++++ 2 files changed, 183 insertions(+), 0 deletions(-) create mode 100644 milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index b83f3fc..c971477 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -1,3 +1,9 @@ +2009-05-12 Fabien Freling <fabien.freling(a)lrde.epita.fr> + + Add a morpho transformation before edges computation. + * fabien/igr/smooth_fixed_seg/main.cc: New edge computation, using + morpho transformations. + 2009-05-12 Edwin Carlinet <carlinet(a)lrde.epita.fr> Inim project fixes. diff --git a/milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc b/milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc new file mode 100644 index 0000000..7ae0066 --- /dev/null +++ b/milena/sandbox/fabien/igr/smooth_fixed_seg/main.cc @@ -0,0 +1,177 @@ +#include <algorithm> + +#include <mln/core/image/image1d.hh> +#include <mln/core/alias/window1d.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/alias/neighb2d.hh> +#include <mln/core/image/image3d.hh> +#include <mln/core/image/slice_image.hh> +#include <mln/core/image/image_if.hh> +#include <mln/core/routine/duplicate.hh> +#include <mln/core/routine/extend.hh> +#include <mln/core/var.hh> + +#include <mln/io/dump/all.hh> +#include <mln/io/pgm/save.hh> +#include <mln/io/ppm/save.hh> + +#include <mln/value/int_u8.hh> +#include <mln/value/int_u12.hh> +#include <mln/value/label_16.hh> + +#include <mln/accu/sum.hh> +#include <mln/accu/mean.hh> +#include <mln/accu/image/all.hh> +#include <mln/data/fill.hh> +#include <mln/data/paste.hh> +#include <mln/convert/from_to.hh> +#include <mln/labeling/wrap.hh> +#include <mln/level/compute.hh> +#include <mln/level/convert.hh> +#include <mln/level/stretch.hh> +#include <mln/make/image2d.hh> +#include <mln/math/diff_abs.hh> +#include <mln/morpho/dilation.hh> +#include <mln/morpho/erosion.hh> +#include <mln/morpho/closing/structural.hh> +#include <mln/morpho/opening/structural.hh> +#include <mln/morpho/elementary/gradient.hh> +#include <mln/morpho/watershed/flooding.hh> +#include <mln/pw/all.hh> +#include <mln/util/array.hh> + +#include <mln/world/inter_pixel/display_edge.hh> +#include <mln/world/inter_pixel/compute.hh> +#include <mln/world/inter_pixel/immerse.hh> +#include <mln/world/inter_pixel/neighb2d.hh> +#include <mln/world/inter_pixel/all.hh> + +#include <mln/labeling/colorize.hh> +#include <mln/debug/println.hh> +#include <mln/trace/quiet.hh> + + +using namespace mln; +using value::int_u8; +using value::int_u12; +using value::label_16; + + + + +// Mean image. +//------------ +template <typename V> +inline +image1d<float> +mean_image(image1d<V>& input) +{ + window1d win_1; + win_1 + .insert(-2) + .insert(-1) + .insert(0) + .insert(1) + .insert(2); + + image1d<V> closing_ima = morpho::closing::structural(input, win_1); + image1d<V> opening_ima = morpho::opening::structural(input, win_1); + + image1d<accu::mean<float> > result; + + initialize(result, input); + + accu::image::init(result); + accu::image::take(result, closing_ima); + accu::image::take(result, opening_ima); + + return accu::image::to_result(result); +} + + + +// Distance function. +//------------------- + +struct dist_t : Function_vv2v<dist_t> +{ + typedef float result; + + template <typename V> + float operator()(util::array<V> v1, util::array<V> v2) const + { + float res = 0.f; + + accu::sum<V> accu_sum; + + image1d<V> tmp_ima; + convert::from_to(v1, tmp_ima); + image1d<float> morpho_ima = mean_image(tmp_ima); + float sum_v1 = level::compute(accu_sum, morpho_ima); + + image1d<V> tmp_ima2; + convert::from_to(v2, tmp_ima2); + image1d<float> morpho_ima2 = mean_image(tmp_ima2); + float sum_v2 = level::compute(accu_sum, morpho_ima2); + + mln_piter(image1d<float>) p(morpho_ima.domain()); + for_all(p) + res += std::min(morpho_ima(p), morpho_ima2(p)); + + res /= std::max(sum_v1, sum_v2); + + return 1 - res; + } +} dist; + + + + + + + + +int usage(const char* bin) +{ + std::cout << "Usage: " << bin << " input.dump" << std::endl; + return 1; +} + +int main(int argc, char* argv[]) +{ + if (argc != 2) + return usage(argv[0]); + + + // Initialization. + image3d<int_u12> input; + io::dump::load(input, argv[1]); + typedef image2d<util::array<int_u12> > I; + I ima_arr; + initialize(ima_arr, slice(input, 0)); + for (unsigned int i = 0; i < input.nslices(); ++i) + { + image2d<int_u12> tmp_slice = duplicate(slice(input, i)); + mln_piter_(image2d<int_u12>) p(tmp_slice.domain()); + for_all(p) + ima_arr(p).append(tmp_slice(p)); + } + + + // Edges image creation. + //image2d<float> edges = dist_on_edges(ima_arr); + typedef image_if<I, world::inter_pixel::is_pixel> Ix; + Ix imax = world::inter_pixel::immerse(ima_arr); + + // Edges distance computation. + mln_VAR(edges, world::inter_pixel::compute(imax, dist)); + + { + // Display. + mln_VAR(display_ima, world::inter_pixel::display_edge(edges.unmorph_(), 0.0, 3)); + io::pgm::save(level::stretch(int_u8(), display_ima), "edges.pgm"); + } + + + return 0; +} -- 1.6.1.2

16 years

3788: De-activate hsl stuff in value rgb.

by Thierry Geraud

https://svn.lrde.epita.fr/svn/oln/trunk/milena Index: ChangeLog from Thierry Geraud <thierry.geraud(a)lrde.epita.fr> De-activate hsl stuff in value rgb. * mln/value/rgb.hh: De-activate hsl stuff. It shall be moved elsewhere. * mln/trait/value_.hh (mln_dim): New macro. Layout; sort short macros by name. * mln/fun/c.hh (todo): New. fun/c.hh | 3 ++ trait/value_.hh | 7 ++--- value/rgb.hh | 78 ++++++++++++++++++++++++++++---------------------------- 3 files changed, 46 insertions(+), 42 deletions(-) Index: mln/trait/value_.hh --- mln/trait/value_.hh (revision 3787) +++ mln/trait/value_.hh (working copy) @@ -53,11 +53,12 @@ # define mln_trait_value_quant_(V) mln::trait::value_< V >::quant -# define mln_nbits(V) mln::trait::value_< V >::nbits # define mln_card(V) mln::trait::value_< V >::card -# define mln_min(V) mln::trait::value_< V >::min() -# define mln_max(V) mln::trait::value_< V >::max() +# define mln_dim(V) mln::trait::value_< V >::dim # define mln_epsilon(V) mln::trait::value_< V >::epsilon() +# define mln_max(V) mln::trait::value_< V >::max() +# define mln_min(V) mln::trait::value_< V >::min() +# define mln_nbits(V) mln::trait::value_< V >::nbits /// Give the summation type for values of type \c T. Index: mln/value/rgb.hh --- mln/value/rgb.hh (revision 3787) +++ mln/value/rgb.hh (working copy) @@ -42,7 +42,7 @@ # include <mln/value/ops.hh> -# include <mln/fun/v2v/hsl_to_rgb.hh> +// # include <mln/fun/v2v/hsl_to_rgb.hh> # include <mln/value/concept/vectorial.hh> # include <mln/value/int_u.hh> # include <mln/algebra/vec.hh> @@ -55,24 +55,24 @@ - namespace fun - { +// namespace fun +// { - namespace v2v - { +// namespace v2v +// { - template <typename T_rgb> - struct f_hsl_to_rgb_; +// template <typename T_rgb> +// struct f_hsl_to_rgb_; - typedef f_hsl_to_rgb_< value::rgb<8> > f_hsl_to_rgb_3x8_t; - typedef f_hsl_to_rgb_< value::rgb<16> > f_hsl_to_rgb_3x16_t; +// typedef f_hsl_to_rgb_< value::rgb<8> > f_hsl_to_rgb_3x8_t; +// typedef f_hsl_to_rgb_< value::rgb<16> > f_hsl_to_rgb_3x16_t; - extern f_hsl_to_rgb_3x8_t f_hsl_to_rgb_3x8; - extern f_hsl_to_rgb_3x16_t f_hsl_to_rgb_3x16; +// extern f_hsl_to_rgb_3x8_t f_hsl_to_rgb_3x8; +// extern f_hsl_to_rgb_3x16_t f_hsl_to_rgb_3x16; - } +// } - } +// } namespace literal @@ -103,11 +103,11 @@ } - // Forward declaration. - namespace value - { - template <typename H, typename S, typename L> class hsl_; - } +// // Forward declaration. +// namespace value +// { +// template <typename H, typename S, typename L> class hsl_; +// } namespace convert @@ -128,13 +128,13 @@ template <unsigned m> void from_to_(const value::int_u<m>& from, value::rgb<m>& to); - // hsl -> rgb8. - template <typename H, typename S, typename L> - void from_to_(const value::hsl_<H,S,L>&, value::rgb<8>& to); - - // hsl -> rgb16. - template <typename H, typename S, typename L> - void from_to_(const value::hsl_<H,S,L>&, value::rgb<16>& to); +// // hsl -> rgb8. +// template <typename H, typename S, typename L> +// void from_to_(const value::hsl_<H,S,L>&, value::rgb<8>& to); + +// // hsl -> rgb16. +// template <typename H, typename S, typename L> +// void from_to_(const value::hsl_<H,S,L>&, value::rgb<16>& to); // rgb -> bool. template <unsigned m> @@ -397,8 +397,8 @@ } // end of namespace mln -// Needed by from_to_. -# include <mln/fun/v2v/rgb_to_hsl.hh> +// // Needed by from_to_. +// # include <mln/fun/v2v/rgb_to_hsl.hh> # ifndef MLN_INCLUDE_ONLY @@ -787,19 +787,19 @@ to = value::rgb<m>(from, from, from); } - template <typename H, typename S, typename L> - void - from_to_(const value::hsl_<H,S,L>& from, value::rgb<8>& to) - { - to = fun::v2v::f_hsl_to_rgb_3x8(from); - } +// template <typename H, typename S, typename L> +// void +// from_to_(const value::hsl_<H,S,L>& from, value::rgb<8>& to) +// { +// to = fun::v2v::f_hsl_to_rgb_3x8(from); +// } - template <typename H, typename S, typename L> - void - from_to_(const value::hsl_<H,S,L>& from, value::rgb<16>& to) - { - to = fun::v2v::f_hsl_to_rgb_3x16(from); - } +// template <typename H, typename S, typename L> +// void +// from_to_(const value::hsl_<H,S,L>& from, value::rgb<16>& to) +// { +// to = fun::v2v::f_hsl_to_rgb_3x16(from); +// } template <unsigned m> void Index: mln/fun/c.hh --- mln/fun/c.hh (revision 3787) +++ mln/fun/c.hh (working copy) @@ -33,6 +33,9 @@ /// /// Encapsulate a plain (C language-like) pointer to function /// into a functor. +/// +/// \todo Fix category: super is not defined! +/// See mln/value/builtin/integers.hh for an example. # include <mln/fun/internal/selector.hh> # include <mln/metal/unqualif.hh>

16 years

[PATCH 27/31] De-activate hsl stuff in value rgb.

by Roland Levillain

* mln/value/rgb.hh: De-activate hsl stuff. It shall be moved elsewhere. * mln/trait/value_.hh (mln_dim): New macro. Layout; sort short macros by name. * mln/fun/c.hh (todo): New. --- milena/ChangeLog | 10 ++++++ milena/mln/fun/c.hh | 3 ++ milena/mln/trait/value_.hh | 7 ++-- milena/mln/value/rgb.hh | 78 ++++++++++++++++++++++---------------------- 4 files changed, 56 insertions(+), 42 deletions(-) diff --git a/milena/ChangeLog b/milena/ChangeLog index 44d34d3..b26865f 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,3 +1,13 @@ +2009-05-12 Thierry Geraud <thierry.geraud(a)lrde.epita.fr> + + De-activate hsl stuff in value rgb. + + * mln/value/rgb.hh: De-activate hsl stuff. + It shall be moved elsewhere. + * mln/trait/value_.hh (mln_dim): New macro. + Layout; sort short macros by name. + * mln/fun/c.hh (todo): New. + 2009-05-11 Fabien Freling <fabien.freling(a)lrde.epita.fr> Fix full2image() domain for cropped images. diff --git a/milena/mln/fun/c.hh b/milena/mln/fun/c.hh index 400c781..bd07d0e 100644 --- a/milena/mln/fun/c.hh +++ b/milena/mln/fun/c.hh @@ -33,6 +33,9 @@ /// /// Encapsulate a plain (C language-like) pointer to function /// into a functor. +/// +/// \todo Fix category: super is not defined! +/// See mln/value/builtin/integers.hh for an example. # include <mln/fun/internal/selector.hh> # include <mln/metal/unqualif.hh> diff --git a/milena/mln/trait/value_.hh b/milena/mln/trait/value_.hh index d445bdf..571f8b7 100644 --- a/milena/mln/trait/value_.hh +++ b/milena/mln/trait/value_.hh @@ -53,11 +53,12 @@ # define mln_trait_value_quant_(V) mln::trait::value_< V >::quant -# define mln_nbits(V) mln::trait::value_< V >::nbits # define mln_card(V) mln::trait::value_< V >::card -# define mln_min(V) mln::trait::value_< V >::min() -# define mln_max(V) mln::trait::value_< V >::max() +# define mln_dim(V) mln::trait::value_< V >::dim # define mln_epsilon(V) mln::trait::value_< V >::epsilon() +# define mln_max(V) mln::trait::value_< V >::max() +# define mln_min(V) mln::trait::value_< V >::min() +# define mln_nbits(V) mln::trait::value_< V >::nbits /// Give the summation type for values of type \c T. diff --git a/milena/mln/value/rgb.hh b/milena/mln/value/rgb.hh index 54e6b76..c8ff8d9 100644 --- a/milena/mln/value/rgb.hh +++ b/milena/mln/value/rgb.hh @@ -42,7 +42,7 @@ # include <mln/value/ops.hh> -# include <mln/fun/v2v/hsl_to_rgb.hh> +// # include <mln/fun/v2v/hsl_to_rgb.hh> # include <mln/value/concept/vectorial.hh> # include <mln/value/int_u.hh> # include <mln/algebra/vec.hh> @@ -55,24 +55,24 @@ namespace mln - namespace fun - { +// namespace fun +// { - namespace v2v - { +// namespace v2v +// { - template <typename T_rgb> - struct f_hsl_to_rgb_; +// template <typename T_rgb> +// struct f_hsl_to_rgb_; - typedef f_hsl_to_rgb_< value::rgb<8> > f_hsl_to_rgb_3x8_t; - typedef f_hsl_to_rgb_< value::rgb<16> > f_hsl_to_rgb_3x16_t; +// typedef f_hsl_to_rgb_< value::rgb<8> > f_hsl_to_rgb_3x8_t; +// typedef f_hsl_to_rgb_< value::rgb<16> > f_hsl_to_rgb_3x16_t; - extern f_hsl_to_rgb_3x8_t f_hsl_to_rgb_3x8; - extern f_hsl_to_rgb_3x16_t f_hsl_to_rgb_3x16; +// extern f_hsl_to_rgb_3x8_t f_hsl_to_rgb_3x8; +// extern f_hsl_to_rgb_3x16_t f_hsl_to_rgb_3x16; - } +// } - } +// } namespace literal @@ -103,11 +103,11 @@ namespace mln } - // Forward declaration. - namespace value - { - template <typename H, typename S, typename L> class hsl_; - } +// // Forward declaration. +// namespace value +// { +// template <typename H, typename S, typename L> class hsl_; +// } namespace convert @@ -128,13 +128,13 @@ namespace mln template <unsigned m> void from_to_(const value::int_u<m>& from, value::rgb<m>& to); - // hsl -> rgb8. - template <typename H, typename S, typename L> - void from_to_(const value::hsl_<H,S,L>&, value::rgb<8>& to); +// // hsl -> rgb8. +// template <typename H, typename S, typename L> +// void from_to_(const value::hsl_<H,S,L>&, value::rgb<8>& to); - // hsl -> rgb16. - template <typename H, typename S, typename L> - void from_to_(const value::hsl_<H,S,L>&, value::rgb<16>& to); +// // hsl -> rgb16. +// template <typename H, typename S, typename L> +// void from_to_(const value::hsl_<H,S,L>&, value::rgb<16>& to); // rgb -> bool. template <unsigned m> @@ -397,8 +397,8 @@ namespace mln } // end of namespace mln -// Needed by from_to_. -# include <mln/fun/v2v/rgb_to_hsl.hh> +// // Needed by from_to_. +// # include <mln/fun/v2v/rgb_to_hsl.hh> # ifndef MLN_INCLUDE_ONLY @@ -787,19 +787,19 @@ namespace mln to = value::rgb<m>(from, from, from); } - template <typename H, typename S, typename L> - void - from_to_(const value::hsl_<H,S,L>& from, value::rgb<8>& to) - { - to = fun::v2v::f_hsl_to_rgb_3x8(from); - } - - template <typename H, typename S, typename L> - void - from_to_(const value::hsl_<H,S,L>& from, value::rgb<16>& to) - { - to = fun::v2v::f_hsl_to_rgb_3x16(from); - } +// template <typename H, typename S, typename L> +// void +// from_to_(const value::hsl_<H,S,L>& from, value::rgb<8>& to) +// { +// to = fun::v2v::f_hsl_to_rgb_3x8(from); +// } + +// template <typename H, typename S, typename L> +// void +// from_to_(const value::hsl_<H,S,L>& from, value::rgb<16>& to) +// { +// to = fun::v2v::f_hsl_to_rgb_3x16(from); +// } template <unsigned m> void -- 1.6.1.2

16 years

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Olena-patches May 2009