Olena-patches

olena-patches@lrde.epita.fr

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last-svn-commit-211-gb57d26e Fix last details in the image processing chain.

by green

* green/tools/annotating/histo/histo.cc: Manage new inputs/outputs. * green/tools/annotating/opening/opening.cc: Manage new inputs/outputs. * green/tools/annotating/iz/Makefile.am: New Makefile. * green/tools/annotating/iz/iz.cc: New file. * green/tools/annotating/regmax/regmax.cc: Manage new inputs/outputs. --- milena/sandbox/ChangeLog | 10 + .../sandbox/green/tools/annotating/histo/histo.cc | 84 +++-- .../tools/annotating/{histo => iz}/Makefile.am | 0 milena/sandbox/green/tools/annotating/iz/iz.cc | 373 ++++++++++++++++++++ .../green/tools/annotating/opening/opening.cc | 76 +++-- .../green/tools/annotating/regmax/regmax.cc | 253 ++++++++++++-- 6 files changed, 714 insertions(+), 82 deletions(-) copy milena/sandbox/green/tools/annotating/{histo => iz}/Makefile.am (100%) create mode 100644 milena/sandbox/green/tools/annotating/iz/iz.cc diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index f56ea7a..861e635 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -75,6 +75,16 @@ * bin/pgm_to_pbm.cc, * bin/ppm_negate.cc: New. +2010-02-10 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + + Fix last details in the image processing chain. + + * green/tools/annotating/histo/histo.cc: Manage new inputs/outputs. + * green/tools/annotating/opening/opening.cc: Manage new inputs/outputs. + * green/tools/annotating/iz/Makefile.am: New Makefile. + * green/tools/annotating/iz/iz.cc: New file. + * green/tools/annotating/regmax/regmax.cc: Manage new inputs/outputs. + 2010-01-05 Yann Jacquelet <jacquelet(a)lrde.epita.fr> Extend the histogram visualization tools for new projection concept. diff --git a/milena/sandbox/green/tools/annotating/histo/histo.cc b/milena/sandbox/green/tools/annotating/histo/histo.cc index ab0b8af..8037e1a 100644 --- a/milena/sandbox/green/tools/annotating/histo/histo.cc +++ b/milena/sandbox/green/tools/annotating/histo/histo.cc @@ -16,14 +16,14 @@ #include <mln/fun/v2v/rgb8_to_rgbn.hh> -#include <mln/io/dump/save.hh> #include <mln/io/pbm/load.hh> -#include <mln/io/pbm/save.hh> -#include <mln/io/pgm/load.hh> -#include <mln/io/pgm/save.hh> #include <mln/io/ppm/load.hh> +#include <mln/io/dump/save.hh> +#include <mln/io/pgm/save.hh> #include <mln/io/ppm/save.hh> +#include <mln/literal/colors.hh> + #include <mln/opt/at.hh> #include <mln/pw/value.hh> @@ -33,15 +33,19 @@ template <unsigned n> -void mk_histo(const std::string& input, - const std::string& output, - const std::string& histo, - const std::string& mask) +void mk_histo(const std::string& input, // in + const std::string& quant, // in + const std::string& histo, // out + const std::string& proj1, // out + const std::string& proj2, // out + const std::string& mask) // [in] { typedef mln::value::int_u8 t_int_u8; + typedef mln::value::int_u<n> t_int_un; typedef mln::value::rgb8 t_rgb8; typedef mln::value::rgb<n> t_rgbn; typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image2d<t_int_un> t_image2d_int_un; typedef mln::image2d<t_rgb8> t_image2d_rgb8; typedef mln::image2d<t_rgbn> t_image2d_rgbn; typedef mln::image2d<bool> t_image2d_bool; @@ -54,7 +58,9 @@ void mk_histo(const std::string& input, t_image2d_rgbn i1_input; // input rgbn t_image2d_bool m0_input; // mask input t_histo3d h1_input; // histo input - t_image2d_int_u8 p1_histo; // histo proj + t_image2d_int_u8 p1_histo1;// histo proj1 + t_image2d_rgbn p1_histo2;// histo proj2 + t_rgbn red(mln::literal::red); mln::io::ppm::load(i0_input, input.c_str()); i1_input = mln::data::transform(i0_input, t_rgb8_to_rgbn()); @@ -72,9 +78,13 @@ void mk_histo(const std::string& input, // END OF IMAGE PROCESSING CHAIN // BEGIN DUMPING - p1_histo = mln::display::display_histo3d_unsigned(h1_input); + p1_histo1 = mln::display::display_histo3d_unsigned(h1_input); + p1_histo2 = mln::display::display3_histo3d_unsigned(h1_input, red); + + mln::io::ppm::save(i1_input, quant.c_str()); mln::io::dump::save(h1_input, histo.c_str()); - mln::io::pgm::save(p1_histo, output.c_str()); + mln::io::pgm::save(p1_histo1, proj1.c_str()); + mln::io::ppm::save(p1_histo2, proj2.c_str()); // END DUMPING } @@ -82,35 +92,47 @@ void mk_histo(const std::string& input, void usage() { std::cout << std::endl; - std::cout << "histo input.ppm q out.ppm histo.dump [msk.pbm]" << std::endl; - std::cout << "where" << std::endl; - std::cout << "input.ppm is the 8 bits color ppm image" << std::endl; - std::cout << "q is the degree of quanification {2,3,4,5,6,7,8}" << std::endl; - std::cout << "out.pgm is the r/g projection of the histogram" << std::endl; - std::cout << "out.dump is the quantified color histogram" << std::endl; - std::cout << "msk.pbm is the mask which select the pixels" << std::endl; + std::cout << "histo input.ppm q quant.ppm histo.dump proj.pgm" + << " proj.ppm [msk.pbm]" << std::endl; + std::cout << std::endl; + std::cout << "where :" << std::endl; + std::cout << "* [ in] input.ppm is the 8 bits color ppm image" << std::endl; + std::cout << "* [ in] q is the degree of quantification" + << " {2,3,4,5,6,7,8}" << std::endl; + std::cout << "* [out] quant.ppm is the q bits quantified input" + << " image" << std::endl; + std::cout << "* [out] histo.dump is the quantified color" + << " histogram" << std::endl; + std::cout << "* [out] proj.pgm is the r/g projection of the" + << " histogram (summing along the blue axe)" << std::endl; + std::cout << "* [out] proj.ppm is the r/g projection of the" + << " histogram with maxima plot on" << std::endl; + std::cout << "* [ in] msk.pbm is the mask which selects the" + << " pixels" << std::endl; std::cout << std::endl; } int main(int argc, char* args[]) { - if (5 == argc || 6 == argc) + if (7 == argc || 8 == argc) { - const std::string input(args[1]); - const char q = args[2][0]; - const std::string output(args[3]); - const std::string histo(args[4]); - const std::string mask(6 == argc? args[5] : ""); + const std::string input(args[1]); // in + const char q = args[2][0]; // in + const std::string quant(args[3]); // out + const std::string histo(args[4]); // out + const std::string proj1(args[5]); // out + const std::string proj2(args[6]); // out + const std::string mask(8 == argc? args[7] : ""); // [in] switch(q) { - case '2': mk_histo<2>(input, output, histo, mask); break; - case '3': mk_histo<3>(input, output, histo, mask); break; - case '4': mk_histo<4>(input, output, histo, mask); break; - case '5': mk_histo<5>(input, output, histo, mask); break; - case '6': mk_histo<6>(input, output, histo, mask); break; - case '7': mk_histo<7>(input, output, histo, mask); break; - case '8': mk_histo<8>(input, output, histo, mask); break; + case '2': mk_histo<2>(input, quant, histo, proj1, proj2, mask); break; + case '3': mk_histo<3>(input, quant, histo, proj1, proj2, mask); break; + case '4': mk_histo<4>(input, quant, histo, proj1, proj2, mask); break; + case '5': mk_histo<5>(input, quant, histo, proj1, proj2, mask); break; + case '6': mk_histo<6>(input, quant, histo, proj1, proj2, mask); break; + case '7': mk_histo<7>(input, quant, histo, proj1, proj2, mask); break; + case '8': mk_histo<8>(input, quant, histo, proj1, proj2, mask); break; default: usage(); break; } } diff --git a/milena/sandbox/green/tools/annotating/histo/Makefile.am b/milena/sandbox/green/tools/annotating/iz/Makefile.am similarity index 100% copy from milena/sandbox/green/tools/annotating/histo/Makefile.am copy to milena/sandbox/green/tools/annotating/iz/Makefile.am diff --git a/milena/sandbox/green/tools/annotating/iz/iz.cc b/milena/sandbox/green/tools/annotating/iz/iz.cc new file mode 100644 index 0000000..07e5dd9 --- /dev/null +++ b/milena/sandbox/green/tools/annotating/iz/iz.cc @@ -0,0 +1,373 @@ +// TOOLS ==> influence zone transformation + +#include <iostream> +#include <fstream> +#include <boost/format.hpp> + +#include <mln/accu/stat/histo3d_rgb.hh> + +#include <mln/core/macros.hh> +#include <mln/core/alias/neighb3d.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/image/image3d.hh> + +#include <mln/data/compute.hh> + +#include <mln/display/display_histo.hh> + +#include <mln/io/dump/load.hh> +#include <mln/io/dump/save.hh> +#include <mln/io/ppm/load.hh> +#include <mln/io/ppm/save.hh> +#include <mln/io/pgm/load.hh> +#include <mln/io/pgm/save.hh> + +#include <mln/literal/colors.hh> + +#include <mln/labeling/compute.hh> +#include <mln/labeling/mean_values.hh> + +#include <mln/transform/influence_zone_geodesic.hh> + +#include <mln/value/int_u8.hh> + +template <unsigned n> +struct t_labeling_rgbn : mln::Function_v2v< t_labeling_rgbn<n> > +{ + typedef mln::value::rgb<n> t_rgbn; + typedef mln::value::label_8 t_lbl8; + typedef t_rgbn argument; + typedef t_lbl8 result; + typedef mln::image3d<t_lbl8> t_label; + + const t_label& _label; + + t_labeling_rgbn(const t_label& label) : _label(label) {} + + result operator()(const argument& c) const + { + t_lbl8 tmp = mln::opt::at(_label, c.blue(), c.red(), c.green()); + + return tmp; + } +}; + +void compute_stats(const mln::image2d<mln::value::rgb8>& i_input_rgb8, + const mln::image2d<mln::value::label_8>& l_input_lbl8, + const mln::image3d<unsigned>& h_histo_rgbn, + const mln::image3d<mln::value::label_8>& l_histo_lbl8, + const mln::value::label_8& n_labels, + const std::string& log) +{ + typedef mln::algebra::vec<3,float> t_vec3f; + typedef mln::accu::math::sum<unsigned,unsigned> t_sum; + typedef mln::accu::stat::mean<t_vec3f,t_vec3f,t_vec3f> t_mean; + typedef mln::util::array<unsigned> t_count_array; + typedef mln::util::array<t_vec3f> t_mean_array; + + mln::util::array<float> abs((unsigned)(n_labels)+1); + mln::util::array<float> rel((unsigned)(n_labels)+1); + unsigned nb = 0; + + for (unsigned i = 0; i <= n_labels; ++i) + { + abs[i] = 0.0; + rel[i] = 0.0; + } + + // COMPUTE THE SUM + t_count_array count = mln::labeling::compute(t_sum(), + h_histo_rgbn, + l_histo_lbl8, + n_labels); + + // COMPUTE THE TOTAL + for (unsigned i = 0; i <= n_labels; ++i) + { + unsigned c = count[i]; + nb += c; + } + + // COMPUTE THE PERCENTAGES + for (unsigned i = 0; i <= n_labels; ++i) + if (0 < count[i]) + { + abs[i] = ((float)count[i] / nb)*100.0; + rel[i] = ((float)count[i] / (nb - count[0]))*100.0; + } + + // COMPUTE THE MEAN + + t_mean_array mean = mln::labeling::compute(t_mean(), + i_input_rgb8, + l_input_lbl8, + n_labels); + + // CORRECT 0 LABEL STATS + rel[0] = 0; + mean[0][0] = 255.0; + mean[0][1] = 255.0; + mean[0][2] = 0.0; + + // PRINT STATS + std::ofstream log_stream(log.c_str()); + + for (unsigned i = 0; i <= n_labels; ++i) + { + const t_vec3f& mean_v = mean[i]; + + log_stream << boost::format("%2i|" + "r = %6.2f, g = %6.2f, b = %6.2f |" + "c = %7i, %%i = %5.2f, %%c = %5.2f") + % i + % mean_v[0] + % mean_v[1] + % mean_v[2] + % count[i] + % abs[i] + % rel[i] + << std::endl; + } + + log_stream << std::endl << std::endl; + log_stream.flush(); + log_stream.close(); +} + +bool expect(std::istream& stream, const std::string expected) +{ + bool result; + std::string got; + + stream >> got; + + result = (got == expected); + + return result; +} + +std::istream& operator>>(std::istream& stream, + mln::algebra::vec<3,float>& color) +{ + unsigned lbl; + + stream >> lbl; + if (expect(stream, std::string("|")) && + expect(stream, std::string("r")) && + expect(stream, std::string("="))) + { + stream >> color[0]; + + if (expect(stream, std::string(",")) && + expect(stream, std::string("g")) && + expect(stream, std::string("="))) + { + stream >> color[1]; + + if (expect(stream, std::string(",")) && + expect(stream, std::string("b")) && + expect(stream, std::string("="))) + { + stream >> color[2]; + } + } + } + + return stream; +} + +void load(mln::util::array< mln::algebra::vec<3,float> >& m2_label, + const char *colormap) +{ + typedef mln::algebra::vec<3,float> t_vec3f; + typedef mln::util::array<t_vec3f> t_mean_array; + + std::ifstream stream(colormap); + std::string buffer; + + getline(stream, buffer); + + while (0 < buffer.size()) + { + std::stringstream line(buffer); + t_vec3f mean_v; + + line >> mean_v; + + m2_label.append(mean_v); + + getline(stream, buffer); + } + + stream.close(); +} + +template<unsigned n> +void mk_iz(const std::string& labeled, // in + const unsigned d, // in + const mln::neighb3d& nbh, // in + const std::string& input, // in + const std::string& quant, // in + const std::string& histo, // in + const std::string& colormap,// in + const std::string& iz, // out + const std::string& proj, // out + const std::string& mean, // out + const std::string& stats) // [out] +{ + typedef mln::value::int_u8 t_int_u8; + typedef mln::value::label_8 t_lbl8; + typedef mln::value::rgb8 t_rgb8; + typedef mln::value::rgb<n> t_rgbn; + typedef mln::algebra::vec<3,float> t_v3f; + typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgbn> t_image2d_rgbn; + typedef mln::image2d<t_lbl8> t_image2d_lbl8; + typedef mln::image3d<unsigned> t_histo3d; + typedef mln::image3d<t_lbl8> t_image3d_lbl8; + typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + typedef mln::accu::stat::mean<t_v3f,t_v3f,t_v3f> t_mean; + typedef mln::util::array<t_v3f> t_mean_array; + + // START OF IMAGE PROCESSING CHAIN + t_image2d_rgb8 i0_input; // input img + t_image2d_rgbn i1_input; // quant img + t_histo3d h1_input; // histo input + t_histo3d h2_input; // histo input + t_image2d_int_u8 p1_histo; // histo proj + t_image2d_rgb8 p3_histo; // histo proj + t_image3d_lbl8 l2_histo; // label histo + t_image3d_lbl8 l3_histo; // iz label hist + t_mean_array m2_label; // colormap + t_mean_array m3_label; // colormap + t_image2d_lbl8 l3_input; // label input + t_image2d_rgb8 i3_mean; // reconstructed + + t_lbl8 n_lbl; // nb labels + t_rgb8 red(mln::literal::red); + + mln::io::dump::load(l2_histo, labeled.c_str()); + mln::io::ppm::load(i0_input, input.c_str()); + mln::io::ppm::load(i1_input, quant.c_str()); + mln::io::dump::load(h1_input, histo.c_str()); + load(m2_label, colormap.c_str()); + + if (0 == d) + { + l3_histo = mln::transform::influence_zone_geodesic(l2_histo, nbh); + } + else + { + l3_histo = mln::transform::influence_zone_geodesic(l2_histo, nbh, d); + } + // END OF IMAGE PROCESSING CHAIN + + // BEGIN DUMPING + + n_lbl = (t_lbl8)(m2_label.size()-1); + + l3_input = mln::data::transform(i1_input, t_labeling_rgbn<n>(l3_histo)); + i3_mean = mln::labeling::mean_values(i0_input, l3_input, n_lbl); + m3_label = mln::labeling::compute(t_mean(), i0_input, l3_input, n_lbl); + + // CORRECT 0 LABEL STATS + m3_label[0][0] = 255.0; + m3_label[0][1] = 255.0; + m3_label[0][2] = 0.0; + + p3_histo = mln::display::display3_histo3d_unsigned<n>(h1_input, + l3_histo, + m3_label, + red); + mln::io::dump::save(l3_input, iz.c_str()); + mln::io::ppm::save(p3_histo, proj.c_str()); + mln::io::ppm::save(i3_mean, mean.c_str()); + + if (0 < stats.size()) + compute_stats(i0_input, l3_input, h1_input, l3_histo, n_lbl, stats); + + // END DUMPING +} + + +void usage() +{ + std::cout << std::endl; + std::cout << "iz labeled.dump d nbh input.ppm q quant.ppm" + << " histo.dump colormap.txt iz.dump proj.ppm" + << " mean.ppm [stats.txt]" << std::endl; + std::cout << std::endl; + std::cout << "where :" << std::endl; + std::cout << "* [ in] labeled.dump is the labeled 3d histogram" << std::endl; + std::cout << "* [ in] d is the depth for the zone influence" + << " transformation (0 means infinite)" << std::endl; + std::cout << "* [ in] nbh is the 3d neighbourhood {6,18,26}" << std::endl; + std::cout << "* [ in] input.ppm is the 8 bits color ppm image" << std::endl; + std::cout << "* [ in] q is the degree of quantification" + << " {2,3,4,5,6,7,8}" << std::endl; + std::cout << "* [ in] quant.ppm is the q bits quantified input" + << " image" << std::endl; + std::cout << "* [ in] histo.dump is the quantified color" + << " histogram" << std::endl; + std::cout << "* [ in] colormap.txt is the colormap for labels" << std::endl; + std::cout << "* [out] iz.dump is the iz labeled 3d histogram" << std::endl; + std::cout << "* [out] proj.ppm is the r/g projection of the" + << " histogram with maxima label plot on" << std::endl; + std::cout << "* [out] mean.ppm is the mean reconstructed image" << std::endl; + std::cout << "* [out] stats.txt is the statistical label report"<< std::endl; + std::cout << std::endl; +} + +int main(int argc, char* args[]) +{ + if (12 == argc || 13 == argc) + { + const std::string labeled(args[1]); // in + const unsigned d = atoi(args[2]); // in + const char nbh = args[3][0]; // in + const std::string input(args[4]); // in + const char q = args[5][0]; // in + const std::string quant(args[6]); // in + const std::string histo(args[7]); // in + const std::string colormap(args[8]); // in + const std::string iz(args[9]); // out + const std::string proj(args[10]); // out + const std::string mean(args[11]); // out + const std::string stats(13 == argc? args[12] : ""); // [out] + + + mln::neighb3d neighbourhood; + + switch (nbh) + { + case '6': neighbourhood = mln::c6(); break; + case '1': neighbourhood = mln::c18(); break; + case '2': neighbourhood = mln::c26(); break; + default: usage(); return 0; // force usage and quit + } + + switch (q) + { + case '2' : mk_iz<2>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + case '3' : mk_iz<3>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + case '4' : mk_iz<4>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + case '5' : mk_iz<5>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + case '6' : mk_iz<6>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + case '7' : mk_iz<7>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + case '8' : mk_iz<8>(labeled,d,neighbourhood,input,quant, + histo,colormap,iz,proj,mean,stats);break; + default: usage(); break; + } + } + else + usage(); + + return 0; +} diff --git a/milena/sandbox/green/tools/annotating/opening/opening.cc b/milena/sandbox/green/tools/annotating/opening/opening.cc index 3e1dbf2..cdd37fb 100644 --- a/milena/sandbox/green/tools/annotating/opening/opening.cc +++ b/milena/sandbox/green/tools/annotating/opening/opening.cc @@ -15,36 +15,47 @@ #include <mln/io/dump/load.hh> #include <mln/io/dump/save.hh> -#include <mln/io/pgm/load.hh> +#include <mln/io/ppm/save.hh> #include <mln/io/pgm/save.hh> +#include <mln/literal/colors.hh> + #include <mln/morpho/opening/volume.hh> +#include <mln/value/rgb.hh> #include <mln/value/int_u8.hh> -void mk_opening(const std::string& input, - const unsigned min_vol, - const std::string& output, - const std::string& opened) +template <unsigned n> +void mk_opening(const std::string& histo, // in + const unsigned min_vol, // in + const std::string& opened, // out + const std::string& proj1, // out + const std::string& proj2) // out { typedef mln::value::int_u8 t_int_u8; + typedef mln::value::rgb<n> t_rgbn; typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image2d<t_rgbn> t_image2d_rgbn; typedef mln::image3d<unsigned> t_histo3d; typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; // START OF IMAGE PROCESSING CHAIN t_histo3d h1_input; // histo input t_histo3d h2_input; // histo input - t_image2d_int_u8 p1_histo; // histo proj + t_image2d_int_u8 p1_histo1;// histo proj1 + t_image2d_rgbn p1_histo2;// histo proj2 + t_rgbn red(mln::literal::red); - mln::io::dump::load(h1_input, input.c_str()); + mln::io::dump::load(h1_input, histo.c_str()); h2_input = mln::morpho::opening::volume(h1_input, mln::c6(), min_vol); // END OF IMAGE PROCESSING CHAIN // BEGIN DUMPING - p1_histo = mln::display::display_histo3d_unsigned(h2_input); + p1_histo1 = mln::display::display_histo3d_unsigned(h2_input); + p1_histo2 = mln::display::display3_histo3d_unsigned(h2_input, red); mln::io::dump::save(h2_input, opened.c_str()); - mln::io::pgm::save(p1_histo, output.c_str()); + mln::io::pgm::save(p1_histo1, proj1.c_str()); + mln::io::ppm::save(p1_histo2, proj2.c_str()); // END DUMPING } @@ -52,25 +63,46 @@ void mk_opening(const std::string& input, void usage() { std::cout << std::endl; - std::cout << "opening input.dump v out.dump out.ppm" << std::endl; - std::cout << "where" << std::endl; - std::cout << "input.dump is the 3d color input histo" << std::endl; - std::cout << "v is the minimum size of each composant" << std::endl; - std::cout << "out.pgm is the r/g proj of the opened histogram" << std::endl; - std::cout << "out.dump is the opened histogram" << std::endl; + std::cout << "opening q histo.dump v opened.dump proj.pgm" + << " proj.ppm" << std::endl; + std::cout << std::endl; + std::cout << "where :" << std::endl; + std::cout << "* [ in] q is the degree of quantification" + << " {2,3,4,5,6,7,8}" << std::endl; + std::cout << "* [ in] histo.dump is the quantified color" + << " histogram" << std::endl; + std::cout << "* [ in] v is the minimum size (in pixels) of" + << " each composant" << std::endl; + std::cout << "* [out] opened.dump is the filtered histogram" << std::endl; + std::cout << "* [out] proj.pgm is the r/g projection of the" + << " histogram (summing along the blue axe)" << std::endl; + std::cout << "* [out] proj.ppm is the r/g projection of the" + << " histogram with maxima plot on" << std::endl; std::cout << std::endl; } int main(int argc, char* args[]) { - if (5 == argc) + if (7 == argc) { - const std::string input(args[1]); - const unsigned min_vol = atoi(args[2]); - const std::string output(args[3]); - const std::string opened(args[4]); - - mk_opening(input, min_vol, output, opened); + const char q = args[1][0]; // in + const std::string histo(args[2]); // in + const unsigned min_vol = atoi(args[3]); // in + const std::string opened(args[4]); // out + const std::string proj1(args[5]); // out + const std::string proj2(args[6]); // out + + switch(q) + { + case '2': mk_opening<2>(histo, min_vol, opened, proj1, proj2); break; + case '3': mk_opening<3>(histo, min_vol, opened, proj1, proj2); break; + case '4': mk_opening<4>(histo, min_vol, opened, proj1, proj2); break; + case '5': mk_opening<5>(histo, min_vol, opened, proj1, proj2); break; + case '6': mk_opening<6>(histo, min_vol, opened, proj1, proj2); break; + case '7': mk_opening<7>(histo, min_vol, opened, proj1, proj2); break; + case '8': mk_opening<8>(histo, min_vol, opened, proj1, proj2); break; + default: usage(); break; + } } else usage(); diff --git a/milena/sandbox/green/tools/annotating/regmax/regmax.cc b/milena/sandbox/green/tools/annotating/regmax/regmax.cc index 2079bc4..0ff4d2e 100644 --- a/milena/sandbox/green/tools/annotating/regmax/regmax.cc +++ b/milena/sandbox/green/tools/annotating/regmax/regmax.cc @@ -1,8 +1,13 @@ // TOOLS ==> regmax on histo #include <iostream> +#include <fstream> +#include <boost/format.hpp> #include <mln/accu/stat/histo3d_rgb.hh> +#include <mln/accu/stat/mean.hh> + +#include <mln/algebra/vec.hh> #include <mln/core/macros.hh> #include <mln/core/alias/neighb3d.hh> @@ -18,9 +23,14 @@ #include <mln/io/dump/save.hh> #include <mln/io/pgm/load.hh> #include <mln/io/pgm/save.hh> +#include <mln/io/ppm/load.hh> #include <mln/io/ppm/save.hh> #include <mln/labeling/regional_maxima.hh> +#include <mln/labeling/compute.hh> +#include <mln/labeling/mean_values.hh> + +#include <mln/literal/colors.hh> #include <mln/morpho/opening/volume.hh> @@ -28,6 +38,8 @@ #include <mln/value/int_u8.hh> #include <mln/value/rgb8.hh> +#include <mln/util/array.hh> + template <unsigned n> struct t_labeling_rgbn : mln::Function_v2v< t_labeling_rgbn<n> > { @@ -49,19 +61,134 @@ struct t_labeling_rgbn : mln::Function_v2v< t_labeling_rgbn<n> > } }; -void mk_regmax(const std::string& input, - const std::string& quant, - const std::string& histo, - const std::string& label, - const std::string& output) +void compute_stats(const mln::image2d<mln::value::rgb8>& i_input_rgb8, + const mln::image2d<mln::value::label_8>& l_input_lbl8, + const mln::image3d<unsigned>& h_histo_rgbn, + const mln::image3d<mln::value::label_8>& l_histo_lbl8, + const mln::value::label_8& n_labels, + const std::string& log) +{ + typedef mln::algebra::vec<3,float> t_vec3f; + typedef mln::accu::math::sum<unsigned,unsigned> t_sum; + typedef mln::accu::stat::mean<t_vec3f,t_vec3f,t_vec3f> t_mean; + typedef mln::util::array<unsigned> t_count_array; + typedef mln::util::array<t_vec3f> t_mean_array; + + mln::util::array<float> abs((unsigned)(n_labels)+1); + mln::util::array<float> rel((unsigned)(n_labels)+1); + unsigned nb = 0; + + for (unsigned i = 0; i <= n_labels; ++i) + { + abs[i] = 0.0; + rel[i] = 0.0; + } + + // COMPUTE THE SUM + t_count_array count = mln::labeling::compute(t_sum(), + h_histo_rgbn, + l_histo_lbl8, + n_labels); + + // COMPUTE THE TOTAL + for (unsigned i = 0; i <= n_labels; ++i) + { + unsigned c = count[i]; + nb += c; + } + + // COMPUTE THE PERCENTAGES + for (unsigned i = 0; i <= n_labels; ++i) + if (0 < count[i]) + { + abs[i] = ((float)count[i] / nb)*100.0; + rel[i] = ((float)count[i] / (nb - count[0]))*100.0; + } + + // COMPUTE THE MEAN + + t_mean_array mean = mln::labeling::compute(t_mean(), + i_input_rgb8, + l_input_lbl8, + n_labels); + + // CORRECT 0 LABEL STATS + rel[0] = 0; + mean[0][0] = 255.0; + mean[0][1] = 255.0; + mean[0][2] = 0.0; + + // PRINT STATS + std::ofstream log_stream(log.c_str()); + + for (unsigned i = 0; i <= n_labels; ++i) + { + const t_vec3f& mean_v = mean[i]; + + log_stream << boost::format("%2i|" + "r = %6.2f, g = %6.2f, b = %6.2f |" + "c = %7i, %%i = %5.2f, %%c = %5.2f") + % i + % mean_v[0] + % mean_v[1] + % mean_v[2] + % count[i] + % abs[i] + % rel[i] + << std::endl; + } + + log_stream << std::endl << std::endl; + log_stream.flush(); + log_stream.close(); +} + +void save(mln::util::array< mln::algebra::vec<3,float> >& m2_label, + const char *colormap) +{ + typedef mln::algebra::vec<3,float> t_vec3f; + typedef mln::util::array<t_vec3f> t_mean_array; + + std::ofstream stream(colormap); + + for (unsigned i = 0; i < m2_label.size(); ++i) + { + const t_vec3f& mean_v = m2_label[i]; + + stream << boost::format("%2i | r = %6.2f, g = %6.2f, b = %6.2f") + % i + % mean_v[0] + % mean_v[1] + % mean_v[2] + << std::endl; + } + + stream.flush(); + stream.close(); +} + +template <unsigned n> +void mk_regmax(const std::string& input, // in + const std::string& quant, // in + const std::string& histo, // in + const std::string& opened, // in + const mln::neighb3d& nbh, // in + const std::string& labeled, // out + const std::string& proj, // out + const std::string& colormap,// out + const std::string& mean, // out + const std::string& stats) // [out] { typedef mln::value::label_8 t_lbl8; typedef mln::value::rgb8 t_rgb8; - typedef mln::value::rgbn t_rgbn; + typedef mln::value::rgb<n> t_rgbn; typedef mln::value::int_u8 t_int_u8; + typedef mln::value::int_u<n> t_int_un; typedef mln::algebra::vec<3,float> t_v3f; typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image2d<t_int_un> t_image2d_int_un; typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgbn> t_image2d_rgbn; typedef mln::image3d<t_lbl8> t_image3d_lbl8; typedef mln::image2d<t_lbl8> t_image2d_lbl8; typedef mln::image3d<unsigned> t_histo3d; @@ -71,60 +198,128 @@ void mk_regmax(const std::string& input, t_image2d_rgb8 i0_input; // input img t_image2d_rgbn i1_input; // quant img + t_histo3d h1_input; // input histo t_histo3d h2_input; // opened histo -// t_image2d_int_u8 p2_label; // histo proj - t_image2d_lbl8 p2_label; // histo proj -// t_image2d_rgb8 p2_label; // histo proj + t_image2d_rgb8 p2_label; // histo proj t_image3d_lbl8 l2_histo; // label histo - t_mean_array m2_label; // palette + t_image2d_lbl8 l2_input; // label input + t_mean_array m2_label; // colormap + t_image2d_rgb8 i2_mean; // reconstructed t_lbl8 n_lbl; // nb class + t_rgb8 red(mln::literal::red); + // BEGIN LOADING mln::io::ppm::load(i0_input, input.c_str()); mln::io::ppm::load(i1_input, quant.c_str()); - mln::io::dump::load(h2_input, histo.c_str()); + mln::io::dump::load(h1_input, histo.c_str()); + mln::io::dump::load(h2_input, opened.c_str()); // END LOADING // BEGIN IMAGE PROCESSING - l2_histo = mln::labeling::regional_maxima(h2_input, mln::c6(), n_lbl); + l2_histo = mln::labeling::regional_maxima(h2_input, nbh, n_lbl); // END IMAGE PROCESSING // BEGIN SAVING - mln::debug::println(h2_input); mln::io::dump::save(l2_histo, labeled.c_str()); l2_input = mln::data::transform(i1_input, t_labeling_rgbn<n>(l2_histo)); - m2_label = mln::labeling::compute(t_mean(), i0_input, l2_input, n_labels); - p2_label =mln::display::display3_histo3d_unsigned(h2_input,l2_histo,m2_label); + i2_mean = mln::labeling::mean_values(i0_input, l2_input, n_lbl); + m2_label = mln::labeling::compute(t_mean(), i0_input, l2_input, n_lbl); + + // CORRECT 0 LABEL STATS + m2_label[0][0] = 255.0; + m2_label[0][1] = 255.0; + m2_label[0][2] = 0.0; + + p2_label =mln::display::display3_histo3d_unsigned<n>(h1_input, + l2_histo, + m2_label, + red); + + mln::io::ppm::save(p2_label, proj.c_str()); + save(m2_label, colormap.c_str()); + mln::io::ppm::save(i2_mean, mean.c_str()); + + if (0 < stats.size()) + compute_stats(i0_input, l2_input, h1_input, l2_histo, n_lbl, stats); -// mln::io::pgm::save(p2_label, output.c_str()); - mln::io::ppm::save(p2_label, output.c_str()); - std::cout << "Nb classes : " << n_lbl << std::endl; // END SAVING } - void usage() { std::cout << std::endl; - std::cout << "regmax input.dump out.dump out.ppm" << std::endl; - std::cout << "where" << std::endl; - std::cout << "input.dump is opened histo" << std::endl; - std::cout << "out.pgm is the r/g proj of the opened histogram" << std::endl; - std::cout << "out.dump is the labeled histogram" << std::endl; + std::cout << "regmax input.ppm q quant.ppm histo.dump" + << " opened.dump nbh labeled.dump proj.ppm" + << " colormap.txt mean.ppm [stats.txt]" << std::endl; + std::cout << std::endl; + std::cout << "where :" << std::endl; + std::cout << "* [ in] input.ppm is the 8 bits color ppm image" << std::endl; + std::cout << "* [ in] q is the degree of quantification" + << " {2,3,4,5,6,7,8}" << std::endl; + std::cout << "* [ in] quant.ppm is the q bits quantified input" + << " image" << std::endl; + std::cout << "* [ in] histo.dump is the quantified color" + << " histogram" << std::endl; + std::cout << "* [ in] opened.dump is the filtered histogram" << std::endl; + std::cout << "* [ in] nbh is the 3d neighbourhood {6,18,26}" << std::endl; + std::cout << "* [out] labeled.dump is the labeled 3d histogram" << std::endl; + std::cout << "* [out] proj.ppm is the r/g projection of the" + << " histogram with maxima label plot on" << std::endl; + std::cout << "* [out] colormap.txt is the colormap for labels" << std::endl; + std::cout << "* [out] mean.ppm is the mean reconstructed image" << std::endl; + std::cout << "* [out] stats.txt is the statistical label report"<< std::endl; std::cout << std::endl; } int main(int argc, char* args[]) { - if (4 == argc) + if (11 == argc || 12 == argc) { - const std::string input(args[1]); - const std::string output(args[2]); - const std::string labeled(args[3]); + const std::string input(args[1]); // in + const char q = args[2][0]; // in + const std::string quant(args[3]); // in + const std::string histo(args[4]); // in + const std::string opened(args[5]); // in + const char nbh = args[6][0]; // in + const std::string labeled(args[7]); // out + const std::string proj(args[8]); // out + const std::string colormap(args[9]);// out + const std::string mean(args[10]); // out + const std::string stats(12 == argc? args[11] : ""); // [out] + + + mln::neighb3d neighbourhood; + + switch (nbh) + { + case '6': neighbourhood = mln::c6(); break; + case '1': neighbourhood = mln::c18(); break; + case '2': neighbourhood = mln::c26(); break; + default: usage(); return 0; // force usage and quit + } + + switch (q) + { - mk_regmax(input, output, labeled); + case '2': mk_regmax<2>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + case '3': mk_regmax<3>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + case '4': mk_regmax<4>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + case '5': mk_regmax<5>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + case '6': mk_regmax<6>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + case '7': mk_regmax<7>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + case '8': mk_regmax<8>(input,quant,histo,opened,neighbourhood, + labeled,proj,colormap,mean,stats); break; + default: usage(); break; + } } else usage(); -- 1.5.6.5

15 years

last-svn-commit-212-g4d87541 Fix bugs in the histogram visualization tools.

by green

* green/mln/display/display_histo.cc: Add new vizualisations. * green/mln/display/project_histo.cc: Add new color projections. --- milena/sandbox/ChangeLog | 7 + milena/sandbox/green/mln/display/display_histo.hh | 75 ++++-- milena/sandbox/green/mln/display/project_histo.hh | 341 +++++++++++++-------- 3 files changed, 279 insertions(+), 144 deletions(-) diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index 861e635..7cab790 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -77,6 +77,13 @@ 2010-02-10 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Fix bugs in the histogram visualization tools. + + * green/mln/display/display_histo.cc: Add new vizualisations. + * green/mln/display/project_histo.cc: Add new color projections. + +2010-02-10 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Fix last details in the image processing chain. * green/tools/annotating/histo/histo.cc: Manage new inputs/outputs. diff --git a/milena/sandbox/green/mln/display/display_histo.hh b/milena/sandbox/green/mln/display/display_histo.hh index 2ba0b61..ef47182 100644 --- a/milena/sandbox/green/mln/display/display_histo.hh +++ b/milena/sandbox/green/mln/display/display_histo.hh @@ -29,12 +29,14 @@ # define MLN_DISPLAY_DISPLAY_HISTO_HH # include <mln/accu/math/sum.hh> +# include <mln/algebra/vec.hh> # include <mln/data/stretch.hh> # include <mln/display/project_histo.hh> # include <mln/fun/v2v/log.hh> # include <mln/value/int_u8.hh> # include <mln/value/rgb8.hh> # include <mln/value/label_8.hh> +# include <mln/util/array.hh> /// \file @@ -57,19 +59,28 @@ namespace mln image2d<value::int_u8> display_histo3d_unsigned(const image3d<unsigned>& histo); - image2d<value::int_u8> - display2_histo3d_unsigned(const image3d<unsigned>& histo); + template <unsigned n> + image2d< value::int_u<n> > + display2_histo3d_unsigned(const image3d<unsigned>& histo, + const value::int_u<n> ambiguous_color); + template <unsigned n> image2d<value::label_8> display2_histo3d_unsigned(const image3d<unsigned>& histo, - const image3d<value::label_8>& label); + const image3d<value::label_8>& label, + const value::label_8 ambiguous_label); - image2d<value::rgb8> - display3_histo3d_unsigned(const image3d<unsigned>& histo); + template <unsigned n> + image2d< value::rgb<n> > + display3_histo3d_unsigned(const image3d<unsigned>& histo, + const value::rgb<n> ambiguous_color); - image2d<value::rgb8> - display3_histo3d_unsigned(const image3d<unsigned>& histo, - const image3d<value::label_8>& label); + template <unsigned n> + image2d< value::rgb8 > + display3_histo3d_unsigned(const image3d<unsigned>& histo, + const image3d<value::label_8>& label, + const util::array< algebra::vec<3,float> >& pal, + const value::rgb8 ambiguous_color); #ifndef MLN_INCLUDE_ONLY @@ -87,7 +98,7 @@ namespace mln /// \parameter[in] histo the histogram in 3d. /// \result return a equivalent 2d image. - + // FIXME : display_shape [in int_u8] image2d<value::int_u8> display_histo3d_unsigned(const image3d<unsigned>& histo) { @@ -102,40 +113,62 @@ namespace mln return proj_int; } - image2d<value::int_u8> - display2_histo3d_unsigned(const image3d<unsigned>& histo) + // FIXME : display_color [in int_un] + template <unsigned n> + image2d< value::int_u<n> > + display2_histo3d_unsigned(const image3d<unsigned>& histo, + const value::int_u<n> ambiguous_color) { - image2d<value::int_u8> proj = project2_histo<0>(histo); + image2d< value::int_u<n> > proj = project2_histo<n,0>(histo, + ambiguous_color); return proj; } + // FIXME : display_label [in label] + template <unsigned n> image2d<value::label_8> display2_histo3d_unsigned(const image3d<unsigned>& histo, - const image3d<value::label_8>& label) + const image3d<value::label_8>& label, + const value::label_8 ambiguous_label) { - image2d<value::label_8> proj = project2_histo<0>(histo, label); + image2d<value::label_8> proj = project2_histo<n,0>(histo, + label, + ambiguous_label); return proj; } - image2d<value::rgb8> - display3_histo3d_unsigned(const image3d<unsigned>& histo) + // FIXME : display_color [in color] + template <unsigned n> + image2d< value::rgb<n> > + display3_histo3d_unsigned(const image3d<unsigned>& histo, + const value::rgb<n> ambiguous_color) { - image2d<value::rgb8> proj = project3_histo<0>(histo); + image2d< value::rgb<n> > proj = project3_histo<n,0>(histo, + ambiguous_color); return proj; } - image2d<value::rgb8> - display3_histo3d_unsigned(const image3d<unsigned>& histo, - const image3d<value::label_8>& label) + + // FIXME : display_label [in color] + template <unsigned n> + image2d< value::rgb8 > + display3_histo3d_unsigned(const image3d<unsigned>& histo, + const image3d<value::label_8>& label, + const util::array<algebra::vec<3,float> >& pal, + const value::rgb8 ambiguous_color) { - image2d<value::rgb8> proj = project3_histo<0>(histo, label); + image2d< value::rgb8 > proj = project3_histo<n,0>(histo, + label, + pal, + ambiguous_color); return proj; } + #endif // ! MLN_INCLUDE_ONLY diff --git a/milena/sandbox/green/mln/display/project_histo.hh b/milena/sandbox/green/mln/display/project_histo.hh index d842c70..30bcd6d 100644 --- a/milena/sandbox/green/mln/display/project_histo.hh +++ b/milena/sandbox/green/mln/display/project_histo.hh @@ -37,12 +37,16 @@ # include <mln/accu/image/take.hh> # include <mln/accu/image/to_result.hh> +# include <mln/algebra/vec.hh> + # include <mln/opt/at.hh> # include <mln/value/int_u8.hh> # include <mln/value/rgb8.hh> # include <mln/value/label_8.hh> +# include <mln/util/array.hh> + /// \file /// /// \brief Allow the visualization of 3d histogram. @@ -60,9 +64,30 @@ namespace mln image2d<mln_result(A)> project_histo(const image3d<V>& histo); - template <typename A, unsigned direction, typename V> + template <typename A, unsigned n, unsigned direction, typename V> image2d<mln_result(A)> - project2_histo(const image3d<V>& histo); + project2_histo(const image3d<V>& histo, + const value::int_u<n>& ambiguous_color); + + template <unsigned n, unsigned direction, typename V> + image2d<V> + project2_histo(const image3d<unsigned>& histo, + const image3d<V>& label); + + template <unsigned n, unsigned direction> + image2d< value::rgb<n> > + project3_histo(const image3d<unsigned>& histo, + const value::rgb<n> ambiguous_color); + + template <unsigned n, unsigned direction> + image2d< value::rgb8 > + project3_histo(const image3d<unsigned>& histo, + const image3d<value::label_8>& label, + const util::array<algebra::vec<3, float> >& pal, + const value::rgb8 ambiguous_color); + // FIXME ==> palette must be 1d-image not an array !! + + # ifndef MLN_INCLUDE_ONLY @@ -96,80 +121,96 @@ namespace mln return accu::image::to_result(histo_accu); } - template <unsigned direction> - image2d<value::int_u8> - project2_histo(const image3d<unsigned>& histo) + // 0 ==> blue + // 1 ==> red + // 2 ==> green + + // mln::opt::at(histo, blue, red, green) + + template <unsigned n, unsigned direction> + image2d< value::int_u<n> > + project2_histo(const image3d<unsigned>& histo, + const value::int_u<n>& ambiguous_color) { - image2d<value::int_u8> result; + image2d< value::int_u<n> > result; if (0 == direction) // blue { - image2d<value::int_u8> arg_max(histo.ncols(), histo.nslices()); + image2d< value::int_u<n> > arg_max(histo.nrows(), histo.ncols()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nslices(); ++i) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - unsigned max = 0; // minimum as possible - signed pos = -1; + unsigned max = 0; // minimum as possible + def::coord pos = -1; - for (unsigned k = 0; k < histo.nrows(); ++k) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = blue; } } - opt::at(arg_max,i,j) = pos; + if (-1 == pos) + opt::at(arg_max,red,green) = ambiguous_color; + else + opt::at(arg_max,red,green) = pos; } result = arg_max; } else if (1 == direction) // red { - image2d<value::int_u8> arg_max(histo.nrows(), histo.nslices()); + image2d< value::int_u<n> > arg_max(histo.ncols(), histo.nslices()); - for (unsigned j = 0; j < histo.nslices(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.ncols(); ++k) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = red; } } - opt::at(arg_max,i,j) = pos; + if (-1 == pos) + opt::at(arg_max,green,blue) = ambiguous_color; + else + opt::at(arg_max,green,blue) = pos; } result = arg_max; } else // 2 == direction // green { - image2d<value::int_u8> arg_max(histo.nrows(), histo.ncols()); + image2d< value::int_u<n> > arg_max(histo.nrows(), histo.nslices()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.nslices(); ++k) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = green; } } - opt::at(arg_max,i,j) = pos; + if (-1 == pos) + opt::at(arg_max,red,blue) = ambiguous_color; + else + opt::at(arg_max,red,blue) = pos; } result = arg_max; @@ -178,81 +219,91 @@ namespace mln return result; } - template <unsigned direction> + template <unsigned n, unsigned direction> image2d<value::label_8> project2_histo(const image3d<unsigned>& histo, - const image3d<value::label_8>& label) + const image3d<value::label_8>& label, + const value::label_8 ambiguous_label) { image2d<value::label_8> result; if (0 == direction) // blue { - image2d<value::label_8> arg_max(histo.ncols(), histo.nslices()); + image2d<value::label_8> arg_max(histo.nrows(), histo.ncols()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nslices(); ++i) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - unsigned max = 0; // minimum as possible - signed pos = -1; + unsigned max = 0; // minimum as possible + def::coord pos = -1; - for (unsigned k = 0; k < histo.nrows(); ++k) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = blue; } } - opt::at(arg_max,i,j) = opt::at(label,i,j,pos); + if (-1 == pos) + opt::at(arg_max,red,green) = ambiguous_label; + else + opt::at(arg_max,red,green) = opt::at(label, pos, red, green); } result = arg_max; } else if (1 == direction) // red { - image2d<value::label_8> arg_max(histo.nrows(), histo.nslices()); + image2d<value::label_8> arg_max(histo.ncols(), histo.nslices()); - for (unsigned j = 0; j < histo.nslices(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.ncols(); ++k) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = red; } } - opt::at(arg_max,i,j) = opt::at(label,pos,i,j); + if (-1 == pos) + opt::at(arg_max,green,blue) = ambiguous_label; + else + opt::at(arg_max,green,blue) = opt::at(label, blue, pos, green); } result = arg_max; } else // 2 == direction // green { - image2d<value::label_8> arg_max(histo.nrows(), histo.ncols()); + image2d<value::label_8> arg_max(histo.nrows(), histo.nslices()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.nslices(); ++k) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = green; } } - opt::at(arg_max,i,j) = opt::at(label,i,pos,j); + if (-1 == pos) + opt::at(arg_max,red,blue) = ambiguous_label; + else + opt::at(arg_max,red,blue) = opt::at(label, blue, red, pos); } result = arg_max; @@ -262,83 +313,117 @@ namespace mln } + + // FIXME ... determine the color of each class. - template <unsigned direction> - image2d<value::rgb8> - project3_histo(const image3d<unsigned>& histo, - const image3d<value::label_8>& label) + // FIXME la palette est supposée en 8 bits + template <unsigned n, unsigned direction> + image2d< value::rgb8 > + project3_histo(const image3d<unsigned>& histo, + const image3d<value::label_8>& label, + const util::array<algebra::vec<3,float> >& pal, + const value::rgb8 ambiguous_color) { - image2d<value::rgb8> result; + image2d< value::rgb8 > result; if (0 == direction) // blue { - image2d<value::rgb8> arg_max(histo.ncols(), histo.nslices()); + image2d< value::rgb8 > arg_max(histo.nrows(), histo.ncols()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nslices(); ++i) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - unsigned max = 0; // minimum as possible - signed pos = -1; + unsigned max = 0; // minimum as possible + def::coord pos = -1; - for (unsigned k = 0; k < histo.nrows(); ++k) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = blue; } } - opt::at(arg_max,i,j) = value::rgb8(i,j,pos); + if (-1 == pos) + opt::at(arg_max,red,green) = ambiguous_color; + else + { + value::int_u8 r = pal[opt::at(label,pos,red,green)][0]; + value::int_u8 g = pal[opt::at(label,pos,red,green)][1]; + value::int_u8 b = pal[opt::at(label,pos,red,green)][2]; + value::rgb8 color(r,g,b); + + opt::at(arg_max,red,green) = color; + } } result = arg_max; } else if (1 == direction) // red { - image2d<value::rgb8> arg_max(histo.nrows(), histo.nslices()); + image2d< value::rgb8 > arg_max(histo.ncols(), histo.nslices()); - for (unsigned j = 0; j < histo.nslices(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.ncols(); ++k) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = red; } } - opt::at(arg_max,i,j) = value::rgb8(pos,i,j); + if (-1 == pos) + opt::at(arg_max,green,blue) = ambiguous_color; + else + { + value::int_u8 r = pal[opt::at(label,blue,pos,green)][0]; + value::int_u8 g = pal[opt::at(label,blue,pos,green)][1]; + value::int_u8 b = pal[opt::at(label,blue,pos,green)][2]; + value::rgb8 color(r,g,b); + + opt::at(arg_max,green,blue) = color; + } } result = arg_max; } else // 2 == direction // green { - image2d<value::rgb8> arg_max(histo.nrows(), histo.ncols()); + image2d< value::rgb8 > arg_max(histo.nrows(), histo.nslices()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.nslices(); ++k) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = green; } } - // FIXME ... how to fix the n of rgb - opt::at(arg_max,i,j) = value::rgb8(i,pos,j); + if (-1 == pos) + opt::at(arg_max,red,blue) = ambiguous_color; + else + { + value::int_u8 r = pal[opt::at(label,blue,red,pos)][0]; + value::int_u8 g = pal[opt::at(label,blue,red,pos)][1]; + value::int_u8 b = pal[opt::at(label,blue,red,pos)][2]; + value::rgb8 color(r,g,b); + + opt::at(arg_max,red,blue) = color; + } } result = arg_max; @@ -347,81 +432,91 @@ namespace mln return result; } - template <unsigned direction> - image2d<value::rgb8> - project3_histo(const image3d<unsigned>& histo) + + template <unsigned n, unsigned direction> + image2d< value::rgb<n> > + project3_histo(const image3d<unsigned>& histo, + const value::rgb<n> ambiguous_color) { - image2d<value::rgb8> result; + image2d< value::rgb<n> > result; if (0 == direction) // blue { - image2d<value::rgb8> arg_max(histo.ncols(), histo.nslices()); + image2d< value::rgb<n> > arg_max(histo.nrows(), histo.ncols()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nslices(); ++i) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - unsigned max = 0; // minimum as possible - signed pos = -1; + unsigned max = 0; // minimum as possible + def::coord pos = -1; - for (unsigned k = 0; k < histo.nrows(); ++k) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = blue; } } - opt::at(arg_max,i,j) = value::rgb8(i,j,pos); + if (-1 == pos) + opt::at(arg_max,red,green) = ambiguous_color; + else + opt::at(arg_max,red,green) = value::rgb<n>(red,green,pos); } result = arg_max; } else if (1 == direction) // red { - image2d<value::rgb8> arg_max(histo.nrows(), histo.nslices()); + image2d< value::rgb<n> > arg_max(histo.ncols(), histo.nslices()); - for (unsigned j = 0; j < histo.nslices(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.ncols(); ++k) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = red; } } - opt::at(arg_max,i,j) = value::rgb8(pos,i,j); + if (-1 == pos) + opt::at(arg_max,green,blue) = ambiguous_color; + else + opt::at(arg_max,green,blue) = value::rgb<n>(pos,green,blue);; } result = arg_max; } else // 2 == direction // green { - image2d<value::rgb8> arg_max(histo.nrows(), histo.ncols()); + image2d< value::rgb<n> > arg_max(histo.nrows(), histo.nslices()); - for (unsigned j = 0; j < histo.ncols(); ++j) - for (unsigned i = 0; i < histo.nrows(); ++i) + for (def::coord blue = 0; blue < (signed)histo.nslices(); ++blue) + for (def::coord red = 0; red < (signed)histo.nrows(); ++red) { unsigned max = 0; // minimum as possible signed pos = -1; - for (unsigned k = 0; k < histo.nslices(); ++k) + for (def::coord green = 0; green < (signed)histo.ncols(); ++green) { - if (max <= opt::at(histo,i,j,k)) + if (max < opt::at(histo,blue,red,green)) { - max = opt::at(histo,i,j,k); - pos = k; + max = opt::at(histo,blue,red,green); + pos = green; } } - // FIXME ... how to fix the n of rgb - opt::at(arg_max,i,j) = value::rgb8(i,pos,j); + if (-1 == pos) + opt::at(arg_max,red,blue) = ambiguous_color; + else + opt::at(arg_max,red,blue) = value::rgb<n>(red,pos,blue); } result = arg_max; -- 1.5.6.5

15 years

last-svn-commit-214-gb15c1b6 Delete BUG image file in milena/img.

by green

* milena/img/BUG_lean_ascii.pgm.gz: Delete this file. --- milena/img/BUG_lean_ascii.pgm.gz | Bin 75726 -> 0 bytes 1 files changed, 0 insertions(+), 0 deletions(-) delete mode 100644 milena/img/BUG_lean_ascii.pgm.gz diff --git a/milena/img/BUG_lean_ascii.pgm.gz b/milena/img/BUG_lean_ascii.pgm.gz deleted file mode 100644 index 7ba3e9d1b02e3a41704448faf72a6c7afe2e8259..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 75726 zcmV)EK)}BriwFqaeZols1430tUu<PzZeL+@V`*tFaA$1*r2R{8CDHQ)2<_`rSYiX4 zne%?k4k5%2Mk6$0J3=GD1`r@VKV2syGUJr}-^_1uWw+byzP`6kR%T>8{`>O$uYUe_ z|HJ?OfBS#_Km8B?-OvB!fBg9$|L6br|L6by|NMXa)c+=@|LN!FfB2vOfB)T2F8^)W z|Ltx+|Lgz$|M-9S`G5US|KI=X|LrILH|2lxls<m`J^p>{Pp<PP*YWRB@p1ioG&~9( z|GrlCzmM7eT&Df`d@cPv_7}?@?cX=Fe?O>ad$fPw)ZVXG`=R;YpY!_p+3DwJ{d<h| z?@@l9pOOE4vVVT&zmK!x@$WC^!pHINvGK9v>jNL{dmj77f8Vq!9?L$y|J!~){`=wk z-#_~Ivb>+?RQ`SZ_w3U9^?4poPV@XlPRYOc{-d1UAF%Owzo(rCe}Mg)dOm;b3kiQw z{V(im?>Bb*Ipgz+kKO<L*#GeU1^>75bN}G%&nTyXf0+D%Unk2yuK31;-yQ!bXZiJ( 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zj$3xK*hB7~Y0F0J&*XK9A8APmwk{<>e8;CqnwIf*0$1}y!_$=r&{C>L-TjnUrmNJY z)HfVeH7ykj_=%{qMTk!g%!1C83X-l)s>rNm%p)%h(^o=qh3Q);Mq~rA1E_ciD^$EB zI>jLb&sbk*a?oZu^9FjQ*z#d6JR|V}G^;LegkffPh4%d-k;Fp(!Kg{H?V@y8mYWPW zGN93KQ^33>QGC{ASm^JPfFbkAlfstKb$v=gO?s<z2C*y1dSRkLsv=0>j&XhHY3W#e z5|KRKIQG~xj?Z7WM3WuObS{!!($no6`vM@zSq@@gC=kU3T(za8=3X4Dmx3q<^)ob# zR4?ZRvip9q((Kc-XNv^GmeQkjLcsBG2kZ58zNQBs&+HZN?%z#r2@h@=bG$zv;|S-F s3x*=Qri}^xL>ef5Ck*N2L2;(SF0#G4gpkbiYmgN8KUId9=vfa00K}cLD*ylh -- 1.5.6.5

15 years

last-svn-commit-186-g81d6850 Fix the outside template use case for the convolve macros.

by green

* mln/linear/ch_convolve.hh (mln_ch_convolve_, mln_ch_convolve_grad_): Define new macros to work outside templates. --- milena/ChangeLog | 8 ++++++++ milena/mln/linear/ch_convolve.hh | 9 ++++++++- 2 files changed, 16 insertions(+), 1 deletions(-) diff --git a/milena/ChangeLog b/milena/ChangeLog index c7da59f..4f302ce 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -534,6 +534,14 @@ * mln/value/rgb.hh: Make use of the new routine to print a correct type names in dump format. +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + + Fix the outside template use case for the convolve macros. + + * mln/linear/ch_convolve.hh (mln_ch_convolve_, mln_ch_convolve_grad_): + Define new macros to work outside templates. + + 2009-11-18 Guillaume Lazzara <z(a)lrde.epita.fr> * doc/white_paper/white_paper.tex: Fix an invalid URL. diff --git a/milena/mln/linear/ch_convolve.hh b/milena/mln/linear/ch_convolve.hh index ef9fb42..9ea45e5 100644 --- a/milena/mln/linear/ch_convolve.hh +++ b/milena/mln/linear/ch_convolve.hh @@ -1,4 +1,5 @@ -// Copyright (C) 2008, 2009 EPITA Research and Development Laboratory (LRDE) +// Copyright (C) 2008, 2009 EPITA Research and Development Laboratory +// (LRDE) // // This file is part of Olena. // @@ -44,9 +45,15 @@ # define mln_ch_convolve(I, W) \ typename mln::linear::ch_convolve<I, W>::ret +# define mln_ch_convolve_(I, W) \ + mln::linear::ch_convolve<I, W>::ret + + # define mln_ch_convolve_grad(I, W) \ typename mln::trait::ch_value< I, algebra::vec< I::site::dim, typename mln::linear::ch_convolve<I,W>::ret::value > >::ret +# define mln_ch_convolve_grad_(I, W) \ + mln::trait::ch_value< I, algebra::vec< I::site::dim, mln::linear::ch_convolve<I,W>::ret::value > >::ret namespace mln -- 1.5.6.5

15 years

last-svn-commit-187-g224e84a Extend the test image database.

by green

* green/mln/img_path.hh: Add annoting directories to experiment algorithms on fax, handwritten, typed, logo, bill, map, screenshot, slide image. --- milena/sandbox/ChangeLog | 8 ++++++++ milena/sandbox/green/mln/img_path.hh | 14 ++++++++++++++ 2 files changed, 22 insertions(+), 0 deletions(-) diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index 5cb9a9c..56cfd22 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -75,6 +75,14 @@ * bin/pgm_to_pbm.cc, * bin/ppm_negate.cc: New. +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + + Extend the test image database. + + * green/mln/img_path.hh: Add annoting directories to experiment + algorithms on fax, handwritten, typed, logo, bill, map, screenshot, + slide image. + 2009-11-17 Thierry Geraud <thierry.geraud(a)lrde.epita.fr> Add some bench + canvas + subsampling + browsing code. diff --git a/milena/sandbox/green/mln/img_path.hh b/milena/sandbox/green/mln/img_path.hh index 90cdb49..188b813 100644 --- a/milena/sandbox/green/mln/img_path.hh +++ b/milena/sandbox/green/mln/img_path.hh @@ -33,10 +33,24 @@ #define INIM_IMG_PATH IMG_PATH"/inim" #define INIM_FG_BG_IMG_PATH INIM_IMG_PATH"/fg_bg" #define INIM_IN_IMG_PATH INIM_IMG_PATH"/in" + #define OLENA_IMG_PATH IMG_PATH"/olena" + #define SCRIBO_IMG_PATH IMG_PATH"/scribo" #define SCRIBO_JPG_IMG_PATH SCRIBO_IMG_PATH"/jpg_50p" #define SCRIBO_PGM_IMG_PATH SCRIBO_IMG_PATH"/pgm_50p" #define SCRIBO_PPM_IMG_PATH SCRIBO_IMG_PATH"/ppm_50p" +#define ANNOTING_IMG_PATH IMG_PATH"/annoting" +#define ANNOTING_BILL_IMG_PATH ANNOTING_IMG_PATH"/bill" +#define ANNOTING_FAX_IMG_PATH ANNOTING_IMG_PATH"/fax" +#define ANNOTING_HANDWRITTEN_IMG_PATH ANNOTING_IMG_PATH"/handwritten" +#define ANNOTING_LOGO_IMG_PATH ANNOTING_IMG_PATH"/logo" +#define ANNOTING_MAP_IMG_PATH ANNOTING_IMG_PATH"/map" +#define ANNOTING_SCREENSHOT_IMG_PATH ANNOTING_IMG_PATH"/screenshot" +#define ANNOTING_SLIDE_IMG_PATH ANNOTING_IMG_PATH"/slide" +#define ANNOTING_TYPED_IMG_PATH ANNOTING_IMG_PATH"/typed" + + + #endif // ! MLN_IMG_PATH_HH -- 1.5.6.5

15 years

last-svn-commit-188-g2f0e113 Works on Millet2008 descriptors.

by green

* green/mln/demo/annoting/bic/Makefile: New Makefile. * green/mln/demo/annoting/bic/bic.cc: New impl. of the bic descriptor. * green/mln/demo/annoting/lep/Makefile: New Makefile. * green/mln/demo/annoting/lep/lep.cc: New impl. of the lep descriptor. * green/mln/demo/annoting/project/Makefile: New Makefile. * green/mln/demo/annoting/project/project.cc: New impl. of the project descriptor. * green/mln/demo/annoting/rgb_64/Makefile: New Makefile. * green/mln/demo/annoting/rgb_64/rgb_64.cc: New impl. of the rgb_64 descriptor. * green/mln/demo/annoting/rgb_64_9/Makefile: New Makefile. * green/mln/demo/annoting/rgb_64_9/rgb_64_9.cc: New impl. of the rgb_64_9 descriptor. * green/mln/demo/annoting/class.txt: New notes on fax class. --- milena/sandbox/ChangeLog | 25 +++ milena/sandbox/green/demo/annoting/bic/Makefile.am | 150 ++++++++++++++ milena/sandbox/green/demo/annoting/bic/bic.cc | 87 ++++++++ milena/sandbox/green/demo/annoting/class.txt | 33 +++ milena/sandbox/green/demo/annoting/lep/Makefile.am | 150 ++++++++++++++ milena/sandbox/green/demo/annoting/lep/lep.cc | 92 +++++++++ .../green/demo/annoting/project/Makefile.am | 150 ++++++++++++++ .../sandbox/green/demo/annoting/project/project.cc | 210 ++++++++++++++++++++ .../sandbox/green/demo/annoting/rgb_64/Makefile.am | 150 ++++++++++++++ .../sandbox/green/demo/annoting/rgb_64/rgb_64.cc | 47 +++++ .../green/demo/annoting/rgb_64_9/Makefile.am | 150 ++++++++++++++ .../green/demo/annoting/rgb_64_9/rgb_64_9.cc | 97 +++++++++ 12 files changed, 1341 insertions(+), 0 deletions(-) create mode 100644 milena/sandbox/green/demo/annoting/bic/Makefile.am create mode 100644 milena/sandbox/green/demo/annoting/bic/bic.cc create mode 100644 milena/sandbox/green/demo/annoting/class.txt create mode 100644 milena/sandbox/green/demo/annoting/lep/Makefile.am create mode 100644 milena/sandbox/green/demo/annoting/lep/lep.cc create mode 100644 milena/sandbox/green/demo/annoting/project/Makefile.am create mode 100644 milena/sandbox/green/demo/annoting/project/project.cc create mode 100644 milena/sandbox/green/demo/annoting/rgb_64/Makefile.am create mode 100644 milena/sandbox/green/demo/annoting/rgb_64/rgb_64.cc create mode 100644 milena/sandbox/green/demo/annoting/rgb_64_9/Makefile.am create mode 100644 milena/sandbox/green/demo/annoting/rgb_64_9/rgb_64_9.cc diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index 56cfd22..f032fcf 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -77,6 +77,31 @@ 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Works on Millet2008 descriptors. + + * green/mln/demo/annoting/bic/Makefile: New Makefile. + * green/mln/demo/annoting/bic/bic.cc: New impl. of the bic descriptor. + + * green/mln/demo/annoting/lep/Makefile: New Makefile. + * green/mln/demo/annoting/lep/lep.cc: New impl. of the lep descriptor. + + * green/mln/demo/annoting/project/Makefile: New Makefile. + * green/mln/demo/annoting/project/project.cc: New impl. of the project + descriptor. + + * green/mln/demo/annoting/rgb_64/Makefile: New Makefile. + * green/mln/demo/annoting/rgb_64/rgb_64.cc: New impl. of the rgb_64 + descriptor. + + * green/mln/demo/annoting/rgb_64_9/Makefile: New Makefile. + * green/mln/demo/annoting/rgb_64_9/rgb_64_9.cc: New impl. of the + rgb_64_9 descriptor. + + * green/mln/demo/annoting/class.txt: New notes on fax class. + + +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Extend the test image database. * green/mln/img_path.hh: Add annoting directories to experiment diff --git a/milena/sandbox/green/demo/annoting/bic/Makefile.am b/milena/sandbox/green/demo/annoting/bic/Makefile.am new file mode 100644 index 0000000..96eafb4 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/bic/Makefile.am @@ -0,0 +1,150 @@ +# +# Generic Makefile +# + +######### +# TOOLS # +######### + +INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green +#CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +ECHO= echo +RM= rm +MKDIR= mkdir -p +CP= cp + +SOURCE_PATTERN= green/demo +BUILD__PATTERN= green/build/demo + + +ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) +# Case where make is done from build directory. +SOURCE_DIR= $(subst $(BUILD__PATTERN),$(SOURCE_PATTERN),$(PWD)) +BUILD__DIR= $(PWD)/ +else +# Case where make is done from source directory. +SOURCE_DIR= $(PWD)/ +BUILD__DIR= $(subst $(SOURCE_PATTERN),$(BUILD__PATTERN),$(PWD)) +endif + +SRC= $(notdir $(wildcard $(SOURCE_DIR)/*.cc)) +OLD= $(notdir $(wildcard $(SOURCE_DIR)/*~)) +OBJ= $(patsubst %.cc,%.o,$(SRC)) +SOURCE_MAKEFILE=Makefile.am +BUILD__MAKEFILE=Makefile +TARGET_FILE= $(notdir $(PWD)) +SOURCE_FILES= $(notdir $(wildcard $(SOURCE_DIR)/*.*)) +BUILD__FILES= $(filter-out $(SRC) $(SOURCE_MAKEFILE), $(SOURCE_FILES)) + +BUILD__F_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__FILES)) +SOURCE_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_FILES)) + +BUILD__M_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__MAKEFILE)) +SOURCE_M_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_MAKEFILE)) + +TARGET_F_PATH= $(addprefix $(BUILD__DIR)/,$(TARGET_FILE)) +OBJ_F_PATH= $(addprefix $(BUILD__DIR)/,$(OBJ)) +SRC_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SRC)) +OLD_F_PATH= $(addprefix $(SOURCE_DIR)/,$(OLD)) + +############# +# BOOTSTRAP # +############# + + +bootstrap: $(BUILD__DIR) $(BUILD__F_PATH) $(BUILD__M_PATH) + +# Create, if nessary, the destination directory +$(BUILD__DIR): + $(MKDIR) $(BUILD__DIR) + +# Copy, if nessary, all the files, except the Makefile.am +$(BUILD__F_PATH): $(SOURCE_F_PATH) + $(CP) $(addprefix $(SOURCE_DIR),$(@F)) $@ + +# Copy if nessary, the Makefile.am into Makefile +$(BUILD__M_PATH): $(SOURCE_M_PATH) + $(CP) $(SOURCE_M_PATH) $(BUILD__M_PATH) + + +####### +# ALL # +####### + +# We assume that the call is done from the build directory. +# With the directive vpath, hidden files are found in the source directory. + +all: $(TARGET_F_PATH) + + +$(TARGET_F_PATH): $(OBJ_F_PATH) + $(LINK.cc) $< $(LOADLIBES) $(LDLIBS) -o $@ + +$(OBJ_F_PATH):$(SRC_F_PATH) + $(COMPILE.cc) $(OUTPUT_OPTION) $< + + +######### +# CLEAN # +######### + +# Force every time the deletion +clean: clean_target clean_obj clean_dst clean_old #clean_make + + +clean_target: + -@$(RM) $(TARGET_F_PATH) &> /dev/null + +clean_obj: + -@$(RM) $(OBJ_F_PATH) &> /dev/null + +clean_dst: + -@$(RM) $(BUILD_F_PATH) &> /dev/null + +clean_make: + -@$(RM) $(BUILD_M_PATH) &> /dev/null + +clean_old: + -@$(RM) $(OLD_F_PATH) &> /dev/null + + +######### +# PRINT # +######### + +print: print_tools print_bootstrap + +print_tools: + @$(ECHO) "HOME = $(HOME)" + @$(ECHO) "INCLUDES = $(INCLUDES)" + @$(ECHO) "CXXFLAGS = $(CXXFLAGS)" + @$(ECHO) "ECHO = $(ECHO)" + @$(ECHO) "RM = $(RM)" + @$(ECHO) "MKDIR = $(MKDIR)" + @$(ECHO) "CP = $(CP)" + @$(ECHO) + +print_bootstrap: + @$(ECHO) "PWD = $(PWD)" + @$(ECHO) "SOURCE_PATTERN = $(SOURCE_PATTERN)" + @$(ECHO) "BUILD__PATTERN = $(BUILD__PATTERN)" + @$(ECHO) "SOURCE_DIR = $(SOURCE_DIR)" + @$(ECHO) "BUILD__DIR = $(BUILD__DIR)" + @$(ECHO) "SOURCE_MAKEFILE = $(SOURCE_MAKEFILE)" + @$(ECHO) "BUILD__MAKEFILE = $(BUILD__MAKEFILE)" + @$(ECHO) "TARGET_FILE = $(TARGET_FILE)" + @$(ECHO) "SOURCE_FILES = $(SOURCE_FILES)" + @$(ECHO) "SOURCE_F_PATH = $(SOURCE_F_PATH)" + @$(ECHO) "BUILD__FILES = $(BUILD__FILES)" + @$(ECHO) "BUILD__F_PATH = $(BUILD__F_PATH)" + @$(ECHO) "BUILD__M_PATH = $(BUILD__M_PATH)" + @$(ECHO) "SOURCE_M_PATH = $(SOURCE_M_PATH)" + @$(ECHO) "SRC = $(SRC)" + @$(ECHO) "OBJ = $(OBJ)" + @$(ECHO) "OLD = $(OLD)" + @$(ECHO) "SRC_F_PATH = $(SRC_F_PATH)" + @$(ECHO) "OBJ_F_PATH = $(OBJ_F_PATH)" + @$(ECHO) "OLD_F_PATH = $(OLD_F_PATH)" + @$(ECHO) diff --git a/milena/sandbox/green/demo/annoting/bic/bic.cc b/milena/sandbox/green/demo/annoting/bic/bic.cc new file mode 100644 index 0000000..7e15970 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/bic/bic.cc @@ -0,0 +1,87 @@ +// Test de l'opérateur de Millet BIC +// Composante RGB sur 6 bits, puis on distingue les points intérieurs des points +// extérieurs. Les points intérieurs ont la même couleur que leur 4-voisinage. +// Puis on construit les 2 histogrammes (intérieur/extérieur) +#include <iostream> + +#include <mln/accu/stat/histo3d_rgb.hh> + +#include <mln/core/image/image2d.hh> +#include <mln/core/alias/neighb2d.hh> +#include <mln/core/routine/initialize.hh> +#include <mln/core/var.hh> + +#include <mln/data/compute.hh> +#include <mln/data/convert.hh> +#include <mln/data/transform.hh> +#include <mln/data/fill.hh> + +#include <mln/debug/println.hh> + +#include <mln/fun/v2v/rgb8_to_rgbn.hh> + +#include <mln/img_path.hh> + +#include <mln/io/ppm/load.hh> +#include <mln/io/ppm/save.hh> +#include <mln/io/plot/save_image_sh.hh> + +#include <mln/literal/colors.hh> + +#include <mln/value/rgb.hh> +#include <mln/value/rgb8.hh> + +int main() +{ + typedef mln::value::rgb<3> t_rgb3; + typedef mln::value::rgb8 t_rgb8; + typedef mln::neighb2d t_neighb2d; + typedef mln::image2d<t_rgb3> t_image2d_rgb3; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image3d<unsigned> t_histo3d; + typedef mln::fun::v2v::rgb8_to_rgbn<3> t_rgb8_to_rgb3; + typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + + t_image2d_rgb8 input_rgb8; + t_image2d_rgb3 input_rgb3; + t_image2d_rgb3 interior_rgb3; + t_image2d_rgb3 exterior_rgb3; + t_histo3d histo_exterior; + t_histo3d histo_interior; + + // IMAGE LOADING PHASE + std::cout << "Image loading phase ..." << std::endl; + mln::io::ppm::load(input_rgb8, SCRIBO_PPM_IMG_PATH"/mp00082c_50p.ppm"); + input_rgb3 = mln::data::transform(input_rgb8, t_rgb8_to_rgb3()); + + mln::initialize(interior_rgb3, input_rgb3); + mln::initialize(exterior_rgb3, input_rgb3); + + mln::data::fill(interior_rgb3, mln::literal::black); + mln::data::fill(exterior_rgb3, mln::literal::black); + + mln_piter_(t_image2d_rgb3) p(input_rgb3.domain()); + mln_niter_(t_neighb2d) n(mln::c4(), p); + + for_all(p) + { + bool is_interior = true; + + for_all(n) + is_interior = is_interior && (input_rgb3(p) == input_rgb3(n)); + + if (is_interior) + interior_rgb3(p) = input_rgb3(p); + else + exterior_rgb3(p) = input_rgb3(p); + } + + histo_interior = mln::data::compute(t_histo3d_fun(), interior_rgb3); + histo_exterior = mln::data::compute(t_histo3d_fun(), exterior_rgb3); + + //mln::io::plot::save_image_sh(histo, "histo.sh"); + + // PRINTING PHASE + mln::debug::println(histo_interior); + mln::debug::println(histo_exterior); +} diff --git a/milena/sandbox/green/demo/annoting/class.txt b/milena/sandbox/green/demo/annoting/class.txt new file mode 100644 index 0000000..ec7e92e --- /dev/null +++ b/milena/sandbox/green/demo/annoting/class.txt @@ -0,0 +1,33 @@ +Dans scribo les classes de documents sont: + +- image seule (photo) +- courrier manuscrit +- courrier dactylographié +- facture ou feuille organisée sous forme de tableau +- article de journal +- document composite +- infographie (logo, carte, dessin vectoriel) +- slide (copie d'écran ou sauvegarde au format image) + + +Où se situent les faxes ? + + +Description d'un fax: +- ratio l/L assimilable à du A4 ou US Letter +- nombre de couleurs très petit, < 1000 +- plutôt du N & B, mais quelques faxes sont en couleurs +- généralement un % élevé de blanc (la page vierge) + + +Description d'un article de journal: +- nombre élevés de couleurs (> 10 000) en général +- quelques articles de conférences autour de 5000 + + +Description des photos: +- un nombre très élevé de couleurs +- ratio non A4, non US Letter + + + diff --git a/milena/sandbox/green/demo/annoting/lep/Makefile.am b/milena/sandbox/green/demo/annoting/lep/Makefile.am new file mode 100644 index 0000000..96eafb4 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/lep/Makefile.am @@ -0,0 +1,150 @@ +# +# Generic Makefile +# + +######### +# TOOLS # +######### + +INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green +#CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +ECHO= echo +RM= rm +MKDIR= mkdir -p +CP= cp + +SOURCE_PATTERN= green/demo +BUILD__PATTERN= green/build/demo + + +ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) +# Case where make is done from build directory. +SOURCE_DIR= $(subst $(BUILD__PATTERN),$(SOURCE_PATTERN),$(PWD)) +BUILD__DIR= $(PWD)/ +else +# Case where make is done from source directory. +SOURCE_DIR= $(PWD)/ +BUILD__DIR= $(subst $(SOURCE_PATTERN),$(BUILD__PATTERN),$(PWD)) +endif + +SRC= $(notdir $(wildcard $(SOURCE_DIR)/*.cc)) +OLD= $(notdir $(wildcard $(SOURCE_DIR)/*~)) +OBJ= $(patsubst %.cc,%.o,$(SRC)) +SOURCE_MAKEFILE=Makefile.am +BUILD__MAKEFILE=Makefile +TARGET_FILE= $(notdir $(PWD)) +SOURCE_FILES= $(notdir $(wildcard $(SOURCE_DIR)/*.*)) +BUILD__FILES= $(filter-out $(SRC) $(SOURCE_MAKEFILE), $(SOURCE_FILES)) + +BUILD__F_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__FILES)) +SOURCE_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_FILES)) + +BUILD__M_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__MAKEFILE)) +SOURCE_M_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_MAKEFILE)) + +TARGET_F_PATH= $(addprefix $(BUILD__DIR)/,$(TARGET_FILE)) +OBJ_F_PATH= $(addprefix $(BUILD__DIR)/,$(OBJ)) +SRC_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SRC)) +OLD_F_PATH= $(addprefix $(SOURCE_DIR)/,$(OLD)) + +############# +# BOOTSTRAP # +############# + + +bootstrap: $(BUILD__DIR) $(BUILD__F_PATH) $(BUILD__M_PATH) + +# Create, if nessary, the destination directory +$(BUILD__DIR): + $(MKDIR) $(BUILD__DIR) + +# Copy, if nessary, all the files, except the Makefile.am +$(BUILD__F_PATH): $(SOURCE_F_PATH) + $(CP) $(addprefix $(SOURCE_DIR),$(@F)) $@ + +# Copy if nessary, the Makefile.am into Makefile +$(BUILD__M_PATH): $(SOURCE_M_PATH) + $(CP) $(SOURCE_M_PATH) $(BUILD__M_PATH) + + +####### +# ALL # +####### + +# We assume that the call is done from the build directory. +# With the directive vpath, hidden files are found in the source directory. + +all: $(TARGET_F_PATH) + + +$(TARGET_F_PATH): $(OBJ_F_PATH) + $(LINK.cc) $< $(LOADLIBES) $(LDLIBS) -o $@ + +$(OBJ_F_PATH):$(SRC_F_PATH) + $(COMPILE.cc) $(OUTPUT_OPTION) $< + + +######### +# CLEAN # +######### + +# Force every time the deletion +clean: clean_target clean_obj clean_dst clean_old #clean_make + + +clean_target: + -@$(RM) $(TARGET_F_PATH) &> /dev/null + +clean_obj: + -@$(RM) $(OBJ_F_PATH) &> /dev/null + +clean_dst: + -@$(RM) $(BUILD_F_PATH) &> /dev/null + +clean_make: + -@$(RM) $(BUILD_M_PATH) &> /dev/null + +clean_old: + -@$(RM) $(OLD_F_PATH) &> /dev/null + + +######### +# PRINT # +######### + +print: print_tools print_bootstrap + +print_tools: + @$(ECHO) "HOME = $(HOME)" + @$(ECHO) "INCLUDES = $(INCLUDES)" + @$(ECHO) "CXXFLAGS = $(CXXFLAGS)" + @$(ECHO) "ECHO = $(ECHO)" + @$(ECHO) "RM = $(RM)" + @$(ECHO) "MKDIR = $(MKDIR)" + @$(ECHO) "CP = $(CP)" + @$(ECHO) + +print_bootstrap: + @$(ECHO) "PWD = $(PWD)" + @$(ECHO) "SOURCE_PATTERN = $(SOURCE_PATTERN)" + @$(ECHO) "BUILD__PATTERN = $(BUILD__PATTERN)" + @$(ECHO) "SOURCE_DIR = $(SOURCE_DIR)" + @$(ECHO) "BUILD__DIR = $(BUILD__DIR)" + @$(ECHO) "SOURCE_MAKEFILE = $(SOURCE_MAKEFILE)" + @$(ECHO) "BUILD__MAKEFILE = $(BUILD__MAKEFILE)" + @$(ECHO) "TARGET_FILE = $(TARGET_FILE)" + @$(ECHO) "SOURCE_FILES = $(SOURCE_FILES)" + @$(ECHO) "SOURCE_F_PATH = $(SOURCE_F_PATH)" + @$(ECHO) "BUILD__FILES = $(BUILD__FILES)" + @$(ECHO) "BUILD__F_PATH = $(BUILD__F_PATH)" + @$(ECHO) "BUILD__M_PATH = $(BUILD__M_PATH)" + @$(ECHO) "SOURCE_M_PATH = $(SOURCE_M_PATH)" + @$(ECHO) "SRC = $(SRC)" + @$(ECHO) "OBJ = $(OBJ)" + @$(ECHO) "OLD = $(OLD)" + @$(ECHO) "SRC_F_PATH = $(SRC_F_PATH)" + @$(ECHO) "OBJ_F_PATH = $(OBJ_F_PATH)" + @$(ECHO) "OLD_F_PATH = $(OLD_F_PATH)" + @$(ECHO) diff --git a/milena/sandbox/green/demo/annoting/lep/lep.cc b/milena/sandbox/green/demo/annoting/lep/lep.cc new file mode 100644 index 0000000..24ee7b4 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/lep/lep.cc @@ -0,0 +1,92 @@ +// Test de l'opérateur de Millet LEP +// Composante RGB sur 6 bits, puis sobel 3x3, puis identification configuration +// L'image histogramme des configurations est la résultante + +#include <iostream> + +#include <mln/accu/stat/histo1d.hh> + +#include <mln/binarization/threshold.hh> + +#include <mln/core/alias/w_window2d_int.hh> +#include <mln/core/image/image2d.hh> + +#include <mln/data/compute.hh> +#include <mln/data/convert.hh> +#include <mln/data/transform.hh> + +#include <mln/debug/println.hh> + +#include <mln/fun/v2v/rgb8_to_rgbn.hh> + +#include <mln/img_path.hh> + +#include <mln/io/pgm/load.hh> +#include <mln/io/pgm/save.hh> +#include <mln/io/plot/save_image_sh.hh> + +#include <mln/linear/ch_convolve.hh> +#include <mln/linear/convolve.hh> +#include <mln/linear/sobel_2d.hh> + +#include <mln/make/w_window2d.hh> + +#include <mln/value/rgb.hh> +#include <mln/value/rgb8.hh> +#include <mln/value/int_u8.hh> + +#include <mln/core/var.hh> + + +int main() +{ + using namespace mln; + + typedef mln::w_window2d_int t_win2d; + typedef mln::value::int_u8 t_int_u8; + typedef mln::value::int_u<9> t_int_u9; + typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image2d<t_int_u9> t_image2d_int_u9; + typedef mln::image2d<int> t_image2d_int; + typedef mln::image2d<unsigned> t_image2d_unsigned; + typedef mln::image2d<float> t_image2d_float; + typedef mln::image2d<double> t_image2d_double; + typedef mln::image2d<bool> t_image2d_bool; + typedef mln::image1d<unsigned> t_histo1d; + typedef mln::accu::meta::stat::histo1d t_histo1d_fun; + + t_image2d_int_u8 input_int_u8; + t_image2d_int input_int; + t_image2d_unsigned input_unsigned; + t_image2d_float sobel; + t_image2d_bool thresh_bool; + t_image2d_int_u8 thresh_int_u8; + t_image2d_float conf_float; + t_image2d_int_u9 conf_int_u9; + t_histo1d histo; + + // IMAGE LOADING PHASE + std::cout << "Image loading phase ..." << std::endl; + mln::io::pgm::load(input_int_u8,SCRIBO_PGM_IMG_PATH"/mp00082c_50p_8bits.pgm"); + + sobel = mln::linear::sobel_2d_l1_norm(input_int_u8); + + //mln::io::plot::save_image_sh(sobel, "sobel.sh"); + thresh_bool = mln::binarization::threshold(sobel, 100); + thresh_int_u8 = mln::data::convert(mln::value::int_u8(), thresh_bool); + //mln::io::plot::save_image_sh(thresh, "thresh.sh"); + + int ws[] = { 1, 2, 4, + 8, 256, 16, + 32, 64, 128 }; + + t_win2d win2d = mln::make::w_window2d(ws); + conf_float = mln::linear::convolve(thresh_int_u8, win2d); + conf_int_u9 = mln::data::convert(t_int_u9(), conf_float); + histo = mln::data::compute(t_histo1d_fun(), conf_int_u9); + + mln::io::plot::save_image_sh(histo, "histo.sh"); + + // PRINTING PHASE + mln::debug::println(histo); +} diff --git a/milena/sandbox/green/demo/annoting/project/Makefile.am b/milena/sandbox/green/demo/annoting/project/Makefile.am new file mode 100644 index 0000000..96eafb4 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/project/Makefile.am @@ -0,0 +1,150 @@ +# +# Generic Makefile +# + +######### +# TOOLS # +######### + +INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green +#CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +ECHO= echo +RM= rm +MKDIR= mkdir -p +CP= cp + +SOURCE_PATTERN= green/demo +BUILD__PATTERN= green/build/demo + + +ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) +# Case where make is done from build directory. +SOURCE_DIR= $(subst $(BUILD__PATTERN),$(SOURCE_PATTERN),$(PWD)) +BUILD__DIR= $(PWD)/ +else +# Case where make is done from source directory. +SOURCE_DIR= $(PWD)/ +BUILD__DIR= $(subst $(SOURCE_PATTERN),$(BUILD__PATTERN),$(PWD)) +endif + +SRC= $(notdir $(wildcard $(SOURCE_DIR)/*.cc)) +OLD= $(notdir $(wildcard $(SOURCE_DIR)/*~)) +OBJ= $(patsubst %.cc,%.o,$(SRC)) +SOURCE_MAKEFILE=Makefile.am +BUILD__MAKEFILE=Makefile +TARGET_FILE= $(notdir $(PWD)) +SOURCE_FILES= $(notdir $(wildcard $(SOURCE_DIR)/*.*)) +BUILD__FILES= $(filter-out $(SRC) $(SOURCE_MAKEFILE), $(SOURCE_FILES)) + +BUILD__F_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__FILES)) +SOURCE_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_FILES)) + +BUILD__M_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__MAKEFILE)) +SOURCE_M_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_MAKEFILE)) + +TARGET_F_PATH= $(addprefix $(BUILD__DIR)/,$(TARGET_FILE)) +OBJ_F_PATH= $(addprefix $(BUILD__DIR)/,$(OBJ)) +SRC_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SRC)) +OLD_F_PATH= $(addprefix $(SOURCE_DIR)/,$(OLD)) + +############# +# BOOTSTRAP # +############# + + +bootstrap: $(BUILD__DIR) $(BUILD__F_PATH) $(BUILD__M_PATH) + +# Create, if nessary, the destination directory +$(BUILD__DIR): + $(MKDIR) $(BUILD__DIR) + +# Copy, if nessary, all the files, except the Makefile.am +$(BUILD__F_PATH): $(SOURCE_F_PATH) + $(CP) $(addprefix $(SOURCE_DIR),$(@F)) $@ + +# Copy if nessary, the Makefile.am into Makefile +$(BUILD__M_PATH): $(SOURCE_M_PATH) + $(CP) $(SOURCE_M_PATH) $(BUILD__M_PATH) + + +####### +# ALL # +####### + +# We assume that the call is done from the build directory. +# With the directive vpath, hidden files are found in the source directory. + +all: $(TARGET_F_PATH) + + +$(TARGET_F_PATH): $(OBJ_F_PATH) + $(LINK.cc) $< $(LOADLIBES) $(LDLIBS) -o $@ + +$(OBJ_F_PATH):$(SRC_F_PATH) + $(COMPILE.cc) $(OUTPUT_OPTION) $< + + +######### +# CLEAN # +######### + +# Force every time the deletion +clean: clean_target clean_obj clean_dst clean_old #clean_make + + +clean_target: + -@$(RM) $(TARGET_F_PATH) &> /dev/null + +clean_obj: + -@$(RM) $(OBJ_F_PATH) &> /dev/null + +clean_dst: + -@$(RM) $(BUILD_F_PATH) &> /dev/null + +clean_make: + -@$(RM) $(BUILD_M_PATH) &> /dev/null + +clean_old: + -@$(RM) $(OLD_F_PATH) &> /dev/null + + +######### +# PRINT # +######### + +print: print_tools print_bootstrap + +print_tools: + @$(ECHO) "HOME = $(HOME)" + @$(ECHO) "INCLUDES = $(INCLUDES)" + @$(ECHO) "CXXFLAGS = $(CXXFLAGS)" + @$(ECHO) "ECHO = $(ECHO)" + @$(ECHO) "RM = $(RM)" + @$(ECHO) "MKDIR = $(MKDIR)" + @$(ECHO) "CP = $(CP)" + @$(ECHO) + +print_bootstrap: + @$(ECHO) "PWD = $(PWD)" + @$(ECHO) "SOURCE_PATTERN = $(SOURCE_PATTERN)" + @$(ECHO) "BUILD__PATTERN = $(BUILD__PATTERN)" + @$(ECHO) "SOURCE_DIR = $(SOURCE_DIR)" + @$(ECHO) "BUILD__DIR = $(BUILD__DIR)" + @$(ECHO) "SOURCE_MAKEFILE = $(SOURCE_MAKEFILE)" + @$(ECHO) "BUILD__MAKEFILE = $(BUILD__MAKEFILE)" + @$(ECHO) "TARGET_FILE = $(TARGET_FILE)" + @$(ECHO) "SOURCE_FILES = $(SOURCE_FILES)" + @$(ECHO) "SOURCE_F_PATH = $(SOURCE_F_PATH)" + @$(ECHO) "BUILD__FILES = $(BUILD__FILES)" + @$(ECHO) "BUILD__F_PATH = $(BUILD__F_PATH)" + @$(ECHO) "BUILD__M_PATH = $(BUILD__M_PATH)" + @$(ECHO) "SOURCE_M_PATH = $(SOURCE_M_PATH)" + @$(ECHO) "SRC = $(SRC)" + @$(ECHO) "OBJ = $(OBJ)" + @$(ECHO) "OLD = $(OLD)" + @$(ECHO) "SRC_F_PATH = $(SRC_F_PATH)" + @$(ECHO) "OBJ_F_PATH = $(OBJ_F_PATH)" + @$(ECHO) "OLD_F_PATH = $(OLD_F_PATH)" + @$(ECHO) diff --git a/milena/sandbox/green/demo/annoting/project/project.cc b/milena/sandbox/green/demo/annoting/project/project.cc new file mode 100644 index 0000000..e6b25e3 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/project/project.cc @@ -0,0 +1,210 @@ +// Test de l'opérateur de Millet PROJECT +// subsampling the image sur 100x100 +// Sobel, puis seuillage à 100 +// division horizontale de l'image, puis projection verticale des pixels +// division verticale puis projection horizontale +// assemblage des 4 vecteurs de taille 100 + +#include <iostream> +#include <sstream> + +#include <mln/accu/image/init.hh> +#include <mln/accu/image/take.hh> +#include <mln/accu/image/to_result.hh> +#include <mln/accu/stat/mean.hh> + +#include <mln/binarization/threshold.hh> + +#include <mln/core/alias/box2d.hh> +#include <mln/core/alias/point2d.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/image/image1d.hh> +#include <mln/core/image/dmorph/image_if.hh> +#include <mln/core/routine/initialize.hh> +#include <mln/core/image/dmorph/unproject_image.hh> + + + +#include <mln/data/compute.hh> +#include <mln/data/convert.hh> +#include <mln/data/paste.hh> +#include <mln/data/transform.hh> + +#include <mln/debug/println.hh> + +#include <mln/fun/v2v/projection.hh> + +#include <mln/img_path.hh> + +#include <mln/io/pgm/load.hh> +#include <mln/io/pgm/save.hh> +#include <mln/io/pbm/save.hh> + +#include <mln/linear/sobel_2d.hh> + +#include <mln/opt/at.hh> + +const char *get_name(const char *base, const unsigned i, const unsigned j) +{ + std::ostringstream name; + + name << base; + name << i; + name << "_"; + name << j; + name << ".ppm"; + + return name.str().c_str(); +} + + +mln::image1d<mln::value::int_u8> +project_row(const mln::image2d<mln::value::int_u8>& img) +{ + typedef mln::accu::math::sum<mln::value::int_u8,mln::value::int_u8> t_sum; + typedef mln::fun::v2v::projection<mln::point2d,0> t_projection; + + mln::image1d<t_sum> img_accu(img.ncols()); + + mln::accu::image::init(img_accu); + + mln::accu::image::take(unproject(img_accu, + img.domain(), + t_projection()).rw(), + img); + + return mln::accu::image::to_result(img_accu); +} + +mln::image1d<mln::value::int_u8> +project_col(const mln::image2d<mln::value::int_u8>& img) +{ + typedef mln::accu::math::sum<mln::value::int_u8,mln::value::int_u8> t_sum; + typedef mln::fun::v2v::projection<mln::point2d,1> t_projection; + + mln::image1d<t_sum> img_accu(img.nrows()); + + mln::accu::image::init(img_accu); + + mln::accu::image::take(unproject(img_accu, + img.domain(), + t_projection()).rw(), + img); + + return mln::accu::image::to_result(img_accu); +} + + +int main() +{ + typedef mln::value::int_u8 t_int_u8; + typedef mln::algebra::vec<3,float> t_vec3f; + typedef mln::algebra::vec<3,unsigned> t_vec3u; + typedef mln::image2d<float> t_image2d_float; + typedef mln::image2d<bool> t_image2d_bool; + typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::accu::meta::stat::mean t_mean_fun; + typedef mln::accu::math::sum<t_int_u8,t_int_u8> t_sum; + typedef mln::image1d<t_int_u8> t_image1d_int_u8; + + t_image2d_int_u8 input_int_u8; + t_image2d_float sobel; + t_image2d_bool thresh_bool; + t_image2d_int_u8 thresh_int_u8; + + // IMAGE LOADING PHASE + std::cout << "Image loading phase ..." << std::endl; + mln::io::pgm::load(input_int_u8,SCRIBO_PGM_IMG_PATH"/mp00082c_50p_8bits.pgm"); + + + // IMAGE SPLITTING PHASE + t_image2d_int_u8 subimg_int_u8(mln::box2d(mln::point2d(0,0), + mln::point2d(100,100))); + + mln::box2d domain = input_int_u8.domain(); + mln::point2d pmin = domain.pmin(); + mln::point2d pmax = domain.pmax(); + + unsigned sz_row = (pmax.row() - pmin.row())/ 100; + unsigned sz_col = (pmax.col() - pmin.col())/ 100; + + std::cout << domain << std::endl; + + // Subsampling in 100x100 + // FIXME Test that is it a subsampling, not a upsampling! + for (unsigned i = 0; i < 100; ++i) + for (unsigned j = 0; j < 100; ++j) + { + mln::point2d min(pmin.row()+sz_row*i,pmin.col()+sz_col*j); + mln::point2d max(pmin.row()+sz_row*(i+1),pmin.col()+sz_col*(j+1)); + mln::box2d dom(min,max); + + std::cout << dom << std::endl; + + // Save it + t_image2d_int_u8 input_part_int_u8(dom); + + mln::data::paste(input_int_u8 | dom, input_part_int_u8); + //mln::io::pgm::save(input_part_int_u8, get_name("output",i,j)); + float mean = mln::data::compute(t_mean_fun(), input_part_int_u8); + t_int_u8 val = static_cast<t_int_u8>(mean); + mln::opt::at(subimg_int_u8, i,j) = val; + } + + mln::io::pgm::save(subimg_int_u8, "subimg.pgm"); + + sobel = mln::linear::sobel_2d_l1_norm(subimg_int_u8); + thresh_bool = mln::binarization::threshold(sobel, 100); + thresh_int_u8 = mln::data::convert(t_int_u8(), thresh_bool); + + mln::io::pbm::save(thresh_bool, "subimg.pbm"); + + // Define img_up, img_down, img_left, img_right + t_image2d_int_u8 img_up(mln::box2d(mln::point2d(0,0), + mln::point2d(49,99))); + + mln::data::paste(thresh_int_u8 | img_up.domain(), img_up); + + + t_image2d_int_u8 img_down(mln::box2d(mln::point2d(50,0), + mln::point2d(99,99))); + + mln::data::paste(thresh_int_u8 | img_down.domain(), img_down); + + t_image2d_int_u8 img_left(mln::box2d(mln::point2d(0,0), + mln::point2d(99,49))); + + mln::data::paste(thresh_int_u8 | img_left.domain(), img_left); + + + t_image2d_int_u8 img_right(mln::box2d(mln::point2d(0,50), + mln::point2d(99,99))); + + mln::data::paste(thresh_int_u8 | img_right.domain(), img_right); + + + // Define project_up, project_down, project_left, project_right + t_image1d_int_u8 project_up = project_row(img_up); + t_image1d_int_u8 project_down = project_row(img_down); + t_image1d_int_u8 project_left = project_col(img_left); + t_image1d_int_u8 project_right = project_col(img_right); + + mln::io::pgm::save(img_up, "up.pgm"); + mln::io::pgm::save(img_down, "down.pgm"); + mln::io::pgm::save(img_left, "left.pgm"); + mln::io::pgm::save(img_right, "right.pgm"); + + // PRINTING PHASE + + std::cout << std::endl << "UP" << std::endl; + mln::debug::println(project_up); + + std::cout << std::endl << "DOWN" << std::endl; + mln::debug::println(project_down); + + std::cout << std::endl << "LEFT" << std::endl; + mln::debug::println(project_left); + + std::cout << std::endl << "RIGHT" << std::endl; + mln::debug::println(project_right); +} diff --git a/milena/sandbox/green/demo/annoting/rgb_64/Makefile.am b/milena/sandbox/green/demo/annoting/rgb_64/Makefile.am new file mode 100644 index 0000000..96eafb4 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/rgb_64/Makefile.am @@ -0,0 +1,150 @@ +# +# Generic Makefile +# + +######### +# TOOLS # +######### + +INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green +#CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +ECHO= echo +RM= rm +MKDIR= mkdir -p +CP= cp + +SOURCE_PATTERN= green/demo +BUILD__PATTERN= green/build/demo + + +ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) +# Case where make is done from build directory. +SOURCE_DIR= $(subst $(BUILD__PATTERN),$(SOURCE_PATTERN),$(PWD)) +BUILD__DIR= $(PWD)/ +else +# Case where make is done from source directory. +SOURCE_DIR= $(PWD)/ +BUILD__DIR= $(subst $(SOURCE_PATTERN),$(BUILD__PATTERN),$(PWD)) +endif + +SRC= $(notdir $(wildcard $(SOURCE_DIR)/*.cc)) +OLD= $(notdir $(wildcard $(SOURCE_DIR)/*~)) +OBJ= $(patsubst %.cc,%.o,$(SRC)) +SOURCE_MAKEFILE=Makefile.am +BUILD__MAKEFILE=Makefile +TARGET_FILE= $(notdir $(PWD)) +SOURCE_FILES= $(notdir $(wildcard $(SOURCE_DIR)/*.*)) +BUILD__FILES= $(filter-out $(SRC) $(SOURCE_MAKEFILE), $(SOURCE_FILES)) + +BUILD__F_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__FILES)) +SOURCE_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_FILES)) + +BUILD__M_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__MAKEFILE)) +SOURCE_M_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_MAKEFILE)) + +TARGET_F_PATH= $(addprefix $(BUILD__DIR)/,$(TARGET_FILE)) +OBJ_F_PATH= $(addprefix $(BUILD__DIR)/,$(OBJ)) +SRC_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SRC)) +OLD_F_PATH= $(addprefix $(SOURCE_DIR)/,$(OLD)) + +############# +# BOOTSTRAP # +############# + + +bootstrap: $(BUILD__DIR) $(BUILD__F_PATH) $(BUILD__M_PATH) + +# Create, if nessary, the destination directory +$(BUILD__DIR): + $(MKDIR) $(BUILD__DIR) + +# Copy, if nessary, all the files, except the Makefile.am +$(BUILD__F_PATH): $(SOURCE_F_PATH) + $(CP) $(addprefix $(SOURCE_DIR),$(@F)) $@ + +# Copy if nessary, the Makefile.am into Makefile +$(BUILD__M_PATH): $(SOURCE_M_PATH) + $(CP) $(SOURCE_M_PATH) $(BUILD__M_PATH) + + +####### +# ALL # +####### + +# We assume that the call is done from the build directory. +# With the directive vpath, hidden files are found in the source directory. + +all: $(TARGET_F_PATH) + + +$(TARGET_F_PATH): $(OBJ_F_PATH) + $(LINK.cc) $< $(LOADLIBES) $(LDLIBS) -o $@ + +$(OBJ_F_PATH):$(SRC_F_PATH) + $(COMPILE.cc) $(OUTPUT_OPTION) $< + + +######### +# CLEAN # +######### + +# Force every time the deletion +clean: clean_target clean_obj clean_dst clean_old #clean_make + + +clean_target: + -@$(RM) $(TARGET_F_PATH) &> /dev/null + +clean_obj: + -@$(RM) $(OBJ_F_PATH) &> /dev/null + +clean_dst: + -@$(RM) $(BUILD_F_PATH) &> /dev/null + +clean_make: + -@$(RM) $(BUILD_M_PATH) &> /dev/null + +clean_old: + -@$(RM) $(OLD_F_PATH) &> /dev/null + + +######### +# PRINT # +######### + +print: print_tools print_bootstrap + +print_tools: + @$(ECHO) "HOME = $(HOME)" + @$(ECHO) "INCLUDES = $(INCLUDES)" + @$(ECHO) "CXXFLAGS = $(CXXFLAGS)" + @$(ECHO) "ECHO = $(ECHO)" + @$(ECHO) "RM = $(RM)" + @$(ECHO) "MKDIR = $(MKDIR)" + @$(ECHO) "CP = $(CP)" + @$(ECHO) + +print_bootstrap: + @$(ECHO) "PWD = $(PWD)" + @$(ECHO) "SOURCE_PATTERN = $(SOURCE_PATTERN)" + @$(ECHO) "BUILD__PATTERN = $(BUILD__PATTERN)" + @$(ECHO) "SOURCE_DIR = $(SOURCE_DIR)" + @$(ECHO) "BUILD__DIR = $(BUILD__DIR)" + @$(ECHO) "SOURCE_MAKEFILE = $(SOURCE_MAKEFILE)" + @$(ECHO) "BUILD__MAKEFILE = $(BUILD__MAKEFILE)" + @$(ECHO) "TARGET_FILE = $(TARGET_FILE)" + @$(ECHO) "SOURCE_FILES = $(SOURCE_FILES)" + @$(ECHO) "SOURCE_F_PATH = $(SOURCE_F_PATH)" + @$(ECHO) "BUILD__FILES = $(BUILD__FILES)" + @$(ECHO) "BUILD__F_PATH = $(BUILD__F_PATH)" + @$(ECHO) "BUILD__M_PATH = $(BUILD__M_PATH)" + @$(ECHO) "SOURCE_M_PATH = $(SOURCE_M_PATH)" + @$(ECHO) "SRC = $(SRC)" + @$(ECHO) "OBJ = $(OBJ)" + @$(ECHO) "OLD = $(OLD)" + @$(ECHO) "SRC_F_PATH = $(SRC_F_PATH)" + @$(ECHO) "OBJ_F_PATH = $(OBJ_F_PATH)" + @$(ECHO) "OLD_F_PATH = $(OLD_F_PATH)" + @$(ECHO) diff --git a/milena/sandbox/green/demo/annoting/rgb_64/rgb_64.cc b/milena/sandbox/green/demo/annoting/rgb_64/rgb_64.cc new file mode 100644 index 0000000..9ff2300 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/rgb_64/rgb_64.cc @@ -0,0 +1,47 @@ +// Test de l'opérateur de Millet RGB-64 +// Composante RGB sur 2 bits, puis histogramme de 64 composantes +// L'image est la résultante + +#include <iostream> + +#include <mln/accu/stat/histo3d_rgb.hh> + +#include <mln/core/image/image2d.hh> + +#include <mln/data/compute.hh> +#include <mln/data/transform.hh> + +#include <mln/debug/println.hh> + +#include <mln/fun/v2v/rgb8_to_rgbn.hh> + +#include <mln/img_path.hh> + +#include <mln/io/ppm/load.hh> + +#include <mln/value/rgb.hh> +#include <mln/value/rgb8.hh> + +int main() +{ + typedef mln::fun::v2v::rgb8_to_rgbn<2> t_rgb8_to_rgb2; + typedef mln::value::rgb8 t_rgb8; + typedef mln::value::rgb<2> t_rgb2; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgb2> t_image2d_rgb2; + typedef mln::image3d<unsigned> t_histo3d; + typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + + t_image2d_rgb8 input_rgb8; + t_image2d_rgb2 input_rgb2; + t_histo3d histo; + + // IMAGE LOADING PHASE + std::cout << "Image loading phase ..." << std::endl; + mln::io::ppm::load(input_rgb8, SCRIBO_PPM_IMG_PATH"/mp00082c_50p.ppm"); + input_rgb2 = mln::data::transform(input_rgb8, t_rgb8_to_rgb2()); + histo = mln::data::compute(t_histo3d_fun(), input_rgb2); + + // PRINTING PHASE + mln::debug::println(histo); +} diff --git a/milena/sandbox/green/demo/annoting/rgb_64_9/Makefile.am b/milena/sandbox/green/demo/annoting/rgb_64_9/Makefile.am new file mode 100644 index 0000000..96eafb4 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/rgb_64_9/Makefile.am @@ -0,0 +1,150 @@ +# +# Generic Makefile +# + +######### +# TOOLS # +######### + +INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green +#CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +ECHO= echo +RM= rm +MKDIR= mkdir -p +CP= cp + +SOURCE_PATTERN= green/demo +BUILD__PATTERN= green/build/demo + + +ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) +# Case where make is done from build directory. +SOURCE_DIR= $(subst $(BUILD__PATTERN),$(SOURCE_PATTERN),$(PWD)) +BUILD__DIR= $(PWD)/ +else +# Case where make is done from source directory. +SOURCE_DIR= $(PWD)/ +BUILD__DIR= $(subst $(SOURCE_PATTERN),$(BUILD__PATTERN),$(PWD)) +endif + +SRC= $(notdir $(wildcard $(SOURCE_DIR)/*.cc)) +OLD= $(notdir $(wildcard $(SOURCE_DIR)/*~)) +OBJ= $(patsubst %.cc,%.o,$(SRC)) +SOURCE_MAKEFILE=Makefile.am +BUILD__MAKEFILE=Makefile +TARGET_FILE= $(notdir $(PWD)) +SOURCE_FILES= $(notdir $(wildcard $(SOURCE_DIR)/*.*)) +BUILD__FILES= $(filter-out $(SRC) $(SOURCE_MAKEFILE), $(SOURCE_FILES)) + +BUILD__F_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__FILES)) +SOURCE_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_FILES)) + +BUILD__M_PATH= $(addprefix $(BUILD__DIR)/,$(BUILD__MAKEFILE)) +SOURCE_M_PATH= $(addprefix $(SOURCE_DIR)/,$(SOURCE_MAKEFILE)) + +TARGET_F_PATH= $(addprefix $(BUILD__DIR)/,$(TARGET_FILE)) +OBJ_F_PATH= $(addprefix $(BUILD__DIR)/,$(OBJ)) +SRC_F_PATH= $(addprefix $(SOURCE_DIR)/,$(SRC)) +OLD_F_PATH= $(addprefix $(SOURCE_DIR)/,$(OLD)) + +############# +# BOOTSTRAP # +############# + + +bootstrap: $(BUILD__DIR) $(BUILD__F_PATH) $(BUILD__M_PATH) + +# Create, if nessary, the destination directory +$(BUILD__DIR): + $(MKDIR) $(BUILD__DIR) + +# Copy, if nessary, all the files, except the Makefile.am +$(BUILD__F_PATH): $(SOURCE_F_PATH) + $(CP) $(addprefix $(SOURCE_DIR),$(@F)) $@ + +# Copy if nessary, the Makefile.am into Makefile +$(BUILD__M_PATH): $(SOURCE_M_PATH) + $(CP) $(SOURCE_M_PATH) $(BUILD__M_PATH) + + +####### +# ALL # +####### + +# We assume that the call is done from the build directory. +# With the directive vpath, hidden files are found in the source directory. + +all: $(TARGET_F_PATH) + + +$(TARGET_F_PATH): $(OBJ_F_PATH) + $(LINK.cc) $< $(LOADLIBES) $(LDLIBS) -o $@ + +$(OBJ_F_PATH):$(SRC_F_PATH) + $(COMPILE.cc) $(OUTPUT_OPTION) $< + + +######### +# CLEAN # +######### + +# Force every time the deletion +clean: clean_target clean_obj clean_dst clean_old #clean_make + + +clean_target: + -@$(RM) $(TARGET_F_PATH) &> /dev/null + +clean_obj: + -@$(RM) $(OBJ_F_PATH) &> /dev/null + +clean_dst: + -@$(RM) $(BUILD_F_PATH) &> /dev/null + +clean_make: + -@$(RM) $(BUILD_M_PATH) &> /dev/null + +clean_old: + -@$(RM) $(OLD_F_PATH) &> /dev/null + + +######### +# PRINT # +######### + +print: print_tools print_bootstrap + +print_tools: + @$(ECHO) "HOME = $(HOME)" + @$(ECHO) "INCLUDES = $(INCLUDES)" + @$(ECHO) "CXXFLAGS = $(CXXFLAGS)" + @$(ECHO) "ECHO = $(ECHO)" + @$(ECHO) "RM = $(RM)" + @$(ECHO) "MKDIR = $(MKDIR)" + @$(ECHO) "CP = $(CP)" + @$(ECHO) + +print_bootstrap: + @$(ECHO) "PWD = $(PWD)" + @$(ECHO) "SOURCE_PATTERN = $(SOURCE_PATTERN)" + @$(ECHO) "BUILD__PATTERN = $(BUILD__PATTERN)" + @$(ECHO) "SOURCE_DIR = $(SOURCE_DIR)" + @$(ECHO) "BUILD__DIR = $(BUILD__DIR)" + @$(ECHO) "SOURCE_MAKEFILE = $(SOURCE_MAKEFILE)" + @$(ECHO) "BUILD__MAKEFILE = $(BUILD__MAKEFILE)" + @$(ECHO) "TARGET_FILE = $(TARGET_FILE)" + @$(ECHO) "SOURCE_FILES = $(SOURCE_FILES)" + @$(ECHO) "SOURCE_F_PATH = $(SOURCE_F_PATH)" + @$(ECHO) "BUILD__FILES = $(BUILD__FILES)" + @$(ECHO) "BUILD__F_PATH = $(BUILD__F_PATH)" + @$(ECHO) "BUILD__M_PATH = $(BUILD__M_PATH)" + @$(ECHO) "SOURCE_M_PATH = $(SOURCE_M_PATH)" + @$(ECHO) "SRC = $(SRC)" + @$(ECHO) "OBJ = $(OBJ)" + @$(ECHO) "OLD = $(OLD)" + @$(ECHO) "SRC_F_PATH = $(SRC_F_PATH)" + @$(ECHO) "OBJ_F_PATH = $(OBJ_F_PATH)" + @$(ECHO) "OLD_F_PATH = $(OLD_F_PATH)" + @$(ECHO) diff --git a/milena/sandbox/green/demo/annoting/rgb_64_9/rgb_64_9.cc b/milena/sandbox/green/demo/annoting/rgb_64_9/rgb_64_9.cc new file mode 100644 index 0000000..29e90f3 --- /dev/null +++ b/milena/sandbox/green/demo/annoting/rgb_64_9/rgb_64_9.cc @@ -0,0 +1,97 @@ +// Test de l'opérateur de Millet RGB-64 +// Composante RGB sur 2 bits, puis histogramme de 64 composantes +// L'image est la résultante + +#include <iostream> +#include <sstream> + +#include <mln/accu/stat/histo3d_rgb.hh> + +#include <mln/core/alias/box2d.hh> +#include <mln/core/alias/point2d.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/image/dmorph/image_if.hh> +#include <mln/core/routine/initialize.hh> + +#include <mln/data/compute.hh> +#include <mln/data/paste.hh> +#include <mln/data/transform.hh> + +#include <mln/debug/println.hh> + +#include <mln/fun/v2v/rgb8_to_rgbn.hh> + +#include <mln/img_path.hh> + +#include <mln/io/ppm/load.hh> +#include <mln/io/ppm/save.hh> + +#include <mln/value/rgb.hh> +#include <mln/value/rgb8.hh> + +const char *get_name(const char *base, const unsigned i, const unsigned j) +{ + std::ostringstream name; + + name << base; + name << i; + name << "_"; + name << j; + name << ".ppm"; + + return name.str().c_str(); +} + +int main() +{ + typedef mln::fun::v2v::rgb8_to_rgbn<2> t_rgb8_to_rgb2; + typedef mln::value::rgb8 t_rgb8; + typedef mln::value::rgb<2> t_rgb2; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgb2> t_image2d_rgb2; + typedef mln::image3d<unsigned> t_histo3d; + typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + + t_image2d_rgb8 input_rgb8; + t_image2d_rgb2 input_rgb2; + t_histo3d histo; + + // IMAGE LOADING PHASE + std::cout << "Image loading phase ..." << std::endl; + mln::io::ppm::load(input_rgb8, SCRIBO_PPM_IMG_PATH"/mp00082c_50p.ppm"); + + input_rgb2 = mln::data::transform(input_rgb8, t_rgb8_to_rgb2()); + + // IMAGE SPLITTING PHASE + mln::box2d domain = input_rgb2.domain(); + mln::point2d pmin = domain.pmin(); + mln::point2d pmax = domain.pmax(); + + unsigned sz_row = (pmax.row() - pmin.row())/ 3; + unsigned sz_col = (pmax.col() - pmin.col())/ 3; + + std::cout << domain << std::endl; + + // Divide the domain in nine sub-domains. + for (unsigned i = 0; i < 3; ++i) + for (unsigned j = 0; j < 3; ++j) + { + mln::point2d min(pmin.row()+sz_row*i,pmin.col()+sz_col*j); + mln::point2d max(pmin.row()+sz_row*(i+1),pmin.col()+sz_col*(j+1)); + mln::box2d dom(min,max); + + std::cout << dom << std::endl; + + // Save it + t_image2d_rgb2 input_1o9_rgb2(dom); + + mln::data::paste(input_rgb2 | dom, input_1o9_rgb2); + mln::io::ppm::save(input_1o9_rgb2, get_name("output",i,j)); + + histo = mln::data::compute(t_histo3d_fun(), input_1o9_rgb2); + + // PRINTING PHASE + mln::debug::println(histo); + } + +} -- 1.5.6.5

15 years

last-svn-commit-189-g4b0e1fb Benchmark on distance, preliminary work before optimizing kmean.

by green

* green/bench/transform/distance/Makefile: New Makefile. * green/bench/transform/distance/distance.cc: New processing chain. --- milena/sandbox/ChangeLog | 7 + .../transform/distance}/Makefile.am | 8 +- .../green/bench/transform/distance/distance.cc | 775 ++++++++++++++++++++ 3 files changed, 786 insertions(+), 4 deletions(-) copy milena/sandbox/green/{demo/annoting/project => bench/transform/distance}/Makefile.am (95%) create mode 100644 milena/sandbox/green/bench/transform/distance/distance.cc diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index f032fcf..0850294 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -77,6 +77,13 @@ 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Benchmark on distance, preliminary work before optimizing kmean. + + * green/bench/transform/distance/Makefile: New Makefile. + * green/bench/transform/distance/distance.cc: New processing chain. + +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Works on Millet2008 descriptors. * green/mln/demo/annoting/bic/Makefile: New Makefile. diff --git a/milena/sandbox/green/demo/annoting/project/Makefile.am b/milena/sandbox/green/bench/transform/distance/Makefile.am similarity index 95% copy from milena/sandbox/green/demo/annoting/project/Makefile.am copy to milena/sandbox/green/bench/transform/distance/Makefile.am index 96eafb4..115c385 100644 --- a/milena/sandbox/green/demo/annoting/project/Makefile.am +++ b/milena/sandbox/green/bench/transform/distance/Makefile.am @@ -7,16 +7,16 @@ ######### INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green -#CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) -CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) #CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) ECHO= echo RM= rm MKDIR= mkdir -p CP= cp -SOURCE_PATTERN= green/demo -BUILD__PATTERN= green/build/demo +SOURCE_PATTERN= green/bench +BUILD__PATTERN= green/build/bench ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) diff --git a/milena/sandbox/green/bench/transform/distance/distance.cc b/milena/sandbox/green/bench/transform/distance/distance.cc new file mode 100644 index 0000000..b71b6df --- /dev/null +++ b/milena/sandbox/green/bench/transform/distance/distance.cc @@ -0,0 +1,775 @@ +// BENCH + +#include <mln/opt/at.hh> + +#include <mln/core/alias/box3d.hh> +#include <mln/core/alias/neighb2d.hh> +#include <mln/core/alias/neighb3d.hh> +#include <mln/core/alias/point3d.hh> +#include <mln/core/alias/w_window2d_int.hh> +#include <mln/core/alias/w_window3d_int.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/image/image3d.hh> +#include <mln/core/routine/initialize.hh> + +#include <mln/data/fill.hh> + +#include <mln/io/pgm/save.hh> +#include <mln/io/plot/save_image_sh.hh> + +#include <mln/literal/zero.hh> + +#include <mln/make/w_window2d_int.hh> +#include <mln/make/w_window3d_int.hh> + +#include <mln/transform/influence_zone_geodesic.hh> +#include <mln/transform/influence_zone_front.hh> + +#include <mln/util/array.hh> +#include <mln/util/timer.hh> + +#include <mln/value/label_8.hh> + + +//------------------------------------------------------------------------------ +// Build input, seeds and other tools +//------------------------------------------------------------------------------ + +mln::image2d<mln::value::label_8> build_input2d(unsigned nb_seed, unsigned size) +{ + typedef mln::value::label_8 t_lbl; + mln::image2d<t_lbl> input(mln::box2d(mln::point2d(0,0), + mln::point2d(size,size))); + + mln::data::fill(input, mln::literal::zero); + + unsigned top = size / nb_seed; + unsigned lbl = 0; + + for (unsigned i = top/2; i < size; i += top) + for (unsigned j = top/2; j < size; j += top) + input(mln::point2d(i,j)) = ++lbl; + + //mln::io::pgm::save(input, "input.pgm"); + + return input; +} + +mln::image3d<mln::value::label_8> build_input3d(unsigned nb_seed, unsigned size) +{ + typedef mln::value::label_8 t_lbl; + mln::image3d<t_lbl> input(mln::box3d(mln::point3d(0,0,0), + mln::point3d(size,size,size))); + + mln::data::fill(input, mln::literal::zero); + + unsigned top = size / nb_seed; + unsigned lbl = 0; + + for (unsigned i = top/2; i < size; i += top) + for (unsigned j = top/2; j < size; j += top) + for (unsigned k = top/2; k < size; k += top) + input(mln::point3d(k,i,j)) = ++lbl; + + //mln::io::pgm::save(input, "input.pgm"); + + return input; +} + +mln::util::array<mln::point3d> build_seed3d(unsigned nb_seed, unsigned size) +{ + mln::util::array<mln::point3d> result; + unsigned top = size / nb_seed; + + for (unsigned i = top/2; i < size; i += top) + for (unsigned j = top/2; j < size; j += top) + for (unsigned k = top/2; k < size; k += top) + result.append(mln::point3d(k,i,j)); + + // std::cout << result << std::endl; + + return result; +} + +mln::util::array<mln::point2d> build_seed2d(unsigned nb_seed, unsigned size) +{ + mln::util::array<mln::point2d> result; + unsigned top = size / nb_seed; + + for (unsigned i = top/2; i < size; i += top) + for (unsigned j = top/2; j < size; j += top) + result.append(mln::point2d(j,i)); + + // std::cout << result << std::endl; + + return result; +} + +unsigned distance(mln::point3d p1, mln::point3d p2) +{ + unsigned row2 = (p1.row() - p2.row())*(p1.row() - p2.row()); + unsigned col2 = (p1.col() - p2.col())*(p1.col() - p2.col()); + unsigned sli2 = (p1.sli() - p2.sli())*(p1.sli() - p2.sli()); + unsigned res = row2 + col2 + sli2; + + return res; +} + +unsigned distance(mln::point2d p1, mln::point2d p2) +{ + unsigned row2 = (p1.row() - p2.row())*(p1.row() - p2.row()); + unsigned col2 = (p1.col() - p2.col())*(p1.col() - p2.col()); + unsigned res = row2 + col2; + + return res; +} + + +//------------------------------------------------------------------------------ +// Bench geodesic distance +//------------------------------------------------------------------------------ + +void influence_zone_geodesic_2d(mln::util::timer& timer, + const mln::image2d<mln::value::label_8>& input, + const mln::neighb2d & neighb) +{ + mln::image2d<mln::value::label_8> output; + + timer.start(); + output = mln::transform::influence_zone_geodesic(input, neighb); + timer.stop(); + + //mln::io::pgm::save(output, "output.pgm"); +} + +void influence_zone_geodesic_3d(mln::util::timer& timer, + const mln::image3d<mln::value::label_8>& input, + const mln::neighb3d & neighb) +{ + mln::image3d<mln::value::label_8> output; + + timer.start(); + output = mln::transform::influence_zone_geodesic(input, neighb); + timer.stop(); + + //mln::io::pgm::save(output, "output.pgm"); +} + + +int test_influence_zone_geodesic_2d() +{ + mln::util::timer timer; + +// Test the label c4 + mln::image1d<float> chart_seed_c04(16*16+2); + + mln::data::fill(chart_seed_c04, mln::literal::zero); + + for (unsigned i = 1; i < 16+1; ++i) + { + influence_zone_geodesic_2d(timer,build_input2d(i,256),mln::c4()); + std::cout << "c04|256x256|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c04, i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c04, "geodesic.c04.2d.seed.sh"); + + // Test the label c8 + mln::image1d<float> chart_seed_c08(16*16+2); + + mln::data::fill(chart_seed_c08, mln::literal::zero); + + for (unsigned i = 1; i < 16+1; ++i) + { + influence_zone_geodesic_2d(timer,build_input2d(i,256),mln::c8()); + std::cout << "c08|256x256|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c08, i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c08, "geodesic.c08.2d.seed.sh"); + + // Test the size of the image + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c04(256+1); + + mln::data::fill(chart_size_c04, mln::literal::zero); + + for (unsigned i = 16; i < 256+1; ++i) + { + influence_zone_geodesic_2d(timer, build_input2d(4,i),mln::c4()); + std::cout << "c04|" << i << "x" << i << "|16 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c04, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c04, "geodesic.c04.2d.size.sh"); + + // Test the size of the image + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c08(256+1); + + mln::data::fill(chart_size_c08, mln::literal::zero); + + for (unsigned i = 16; i < 256+1; ++i) + { + influence_zone_geodesic_2d(timer, build_input2d(4,i),mln::c8()); + std::cout << "c08|" << i << "x" << i << "|16 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c08, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c08, "geodesic.c08.2d.size.sh"); + + + return 0; +} + + +void test_influence_zone_geodesic_3d() +{ + mln::util::timer timer; + + // Test the number of labels c06 + mln::image1d<float> chart_seed_c06(5*5*5+2); + + mln::data::fill(chart_seed_c06, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_geodesic_3d(timer, build_input3d(i,128), mln::c6()); + std::cout << "c06|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c06, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c06, "geodesic.c06.3d.seed.sh"); + + // Test the number of labels c18 + mln::image1d<float> chart_seed_c18(5*5*5+2); + + mln::data::fill(chart_seed_c18, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_geodesic_3d(timer, build_input3d(i,128), mln::c18()); + std::cout << "c18|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c18, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c18, "geodesic.c18.3d.seed.sh"); + + // Test the number of labels c26 + mln::image1d<float> chart_seed_c26(5*5*5+2); + + mln::data::fill(chart_seed_c26, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_geodesic_3d(timer, build_input3d(i,128), mln::c26()); + std::cout << "c26|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c26, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c26, "geodesic.c26.3d.seed.sh"); + + // Test the size of the image c06 + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c06(128+1); + + mln::data::fill(chart_size_c06, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_geodesic_3d(timer, build_input3d(2,i), mln::c6()); + std::cout << "c06|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c06, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c06, "geodesic.c06.3d.size.sh"); + + // Test the size of the image c18 + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c18(128+1); + + mln::data::fill(chart_size_c18, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_geodesic_3d(timer, build_input3d(2,i), mln::c18()); + std::cout << "c18|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c18, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c18, "geodesic.c18.3d.size.sh"); + + // Test the size of the image c26 + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c26(128+1); + + mln::data::fill(chart_size_c26, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_geodesic_3d(timer, build_input3d(2,i), mln::c26()); + std::cout << "c26|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c26, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c26, "geodesic.c26.3d.size.sh"); +} + +//------------------------------------------------------------------------------ +// Bench front distance +//------------------------------------------------------------------------------ + +void influence_zone_front_2d(mln::util::timer& timer, + const mln::image2d<mln::value::label_8>& input, + const mln::neighb2d& neighb, + const mln::w_window2d_int& w2d) +{ + mln::image2d<mln::value::label_8> output; + + timer.start(); + output = mln::transform::influence_zone_front(input, neighb, w2d); + timer.stop(); + + //mln::io::pgm::save(output, "output.pgm"); +} + + +void influence_zone_front_3d(mln::util::timer& timer, + const mln::image3d<mln::value::label_8>& input, + const mln::neighb3d& neighb, + const mln::w_window3d_int& w3d) +{ + mln::image3d<mln::value::label_8> output; + + timer.start(); + output = mln::transform::influence_zone_front(input, neighb, w3d); + timer.stop(); + + //mln::io::pgm::save(output, "output.pgm"); +} + + +void test_influence_zone_front_3d() +{ + mln::util::timer timer; + + int ws_c06[] = { + // Internal slice + 0, 0, 0, + 0, 2, 0, + 0, 0, 0, + // Middle slice + 0, 2, 0, + 2, 0, 2, + 0, 2, 0, + // External slice + 0, 0, 0, + 0, 2, 0, + 0, 0, 0 }; + + int ws_c18[] = { + // Internal slice + 0, 6, 0, + 6, 4, 6, + 0, 6, 0, + // Middle slice + 6, 4, 6, + 4, 0, 4, + 6, 4, 6, + // External slice + 0, 6, 0, + 6, 4, 6, + 0, 6, 0 }; + + int ws_c26[] = { + // Internal slice + 7, 6, 7, + 6, 4, 6, + 7, 6, 7, + // Middle slice + 6, 4, 6, + 4, 0, 4, + 6, 4, 6, + // External slice + 7, 6, 7, + 6, 4, 6, + 7, 6, 7 }; + + mln::w_window3d_int w3d_c06 = mln::make::w_window3d_int(ws_c06); + mln::w_window3d_int w3d_c18 = mln::make::w_window3d_int(ws_c18); + mln::w_window3d_int w3d_c26 = mln::make::w_window3d_int(ws_c26); + + // Test the number of labels c06 + mln::image1d<float> chart_seed_c06(5*5*5+2); + + mln::data::fill(chart_seed_c06, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_front_3d(timer, build_input3d(i,128), mln::c6(), w3d_c06); + std::cout << "c06|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c06, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c06, "front.c06.3d.seed.sh"); + + // Test the number of labels c18 + mln::image1d<float> chart_seed_c18(5*5*5+2); + + mln::data::fill(chart_seed_c18, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_front_3d(timer, build_input3d(i,128), mln::c18(), w3d_c18); + std::cout << "c18|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c18, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c18, "front.c18.3d.seed.sh"); + + // Test the number of labels c26 + mln::image1d<float> chart_seed_c26(5*5*5+2); + + mln::data::fill(chart_seed_c26, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_front_3d(timer, build_input3d(i,128), mln::c26(), w3d_c26); + std::cout << "c26|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c26, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c26, "front.c26.3d.seed.sh"); + + // Test the size of the image c06 + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c06(128+1); + + mln::data::fill(chart_size_c06, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_front_3d(timer, build_input3d(2,i), mln::c6(), w3d_c06); + std::cout << "c06|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c06, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c06, "front.c06.3d.size.sh"); + + // Test the size of the image c18 + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c18(128+1); + + mln::data::fill(chart_size_c18, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_front_3d(timer, build_input3d(2,i), mln::c18(), w3d_c18); + std::cout << "c18|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c18, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c18, "front.c18.3d.size.sh"); + + // Test the size of the image c26 + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c26(128+1); + + mln::data::fill(chart_size_c26, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_front_3d(timer, build_input3d(2,i), mln::c26(), w3d_c26); + std::cout << "c26|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c26, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c26, "front.c26.3d.size.sh"); +} + +void test_influence_zone_front_2d() +{ + mln::util::timer timer; + + int ws_c04[] = { + 0, 2, 0, + 2, 0, 2, + 0, 2, 0}; + + int ws_c08[] = { + 6, 4, 6, + 4, 0, 4, + 6, 4, 6}; + + mln::w_window2d_int w2d_c04 = mln::make::w_window2d_int(ws_c04); + mln::w_window2d_int w2d_c08 = mln::make::w_window2d_int(ws_c08); + + // Test the label c4 + mln::image1d<float> chart_seed_c04(16*16+2); + + mln::data::fill(chart_seed_c04, mln::literal::zero); + + for (unsigned i = 1; i < 16+1; ++i) + { + influence_zone_front_2d(timer,build_input2d(i,256),mln::c4(),w2d_c04); + std::cout << "c04|256x256|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c04, i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c04, "front.c04.2d.seed.sh"); + + // Test the label c8 + mln::image1d<float> chart_seed_c08(16*16+2); + + mln::data::fill(chart_seed_c08, mln::literal::zero); + + for (unsigned i = 1; i < 16+1; ++i) + { + influence_zone_front_2d(timer,build_input2d(i,256),mln::c8(),w2d_c08); + std::cout << "c08|256x256|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed_c08, i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed_c08, "front.c08.2d.seed.sh"); + + // Test the size of the image + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c04(256+1); + + mln::data::fill(chart_size_c04, mln::literal::zero); + + for (unsigned i = 16; i < 256+1; ++i) + { + influence_zone_front_2d(timer, build_input2d(4,i),mln::c4(),w2d_c04); + std::cout << "c04|" << i << "x" << i << "|16 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c04, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c04, "front.c04.2d.size.sh"); + + // Test the size of the image + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size_c08(256+1); + + mln::data::fill(chart_size_c08, mln::literal::zero); + + for (unsigned i = 16; i < 256+1; ++i) + { + influence_zone_front_2d(timer, build_input2d(4,i),mln::c8(),w2d_c08); + std::cout << "c08|" << i << "x" << i << "|16 = " + << timer.read() << std::endl; + mln::opt::at(chart_size_c08, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size_c08, "front.c08.2d.size.sh"); +} + + + + + + +//------------------------------------------------------------------------------ +// Bench euclidian distance +//------------------------------------------------------------------------------ + +void influence_zone_euclidian_2d(mln::util::timer& timer, + const mln::image2d<mln::value::label_8>& input, + const mln::util::array<mln::point2d>& seed) +{ + mln::image2d<mln::value::label_8> output; + + timer.start(); + + mln::initialize(output, input); + + mln_piter_(mln::image2d<mln::value::label_8>) p(output.domain()); + mln_eiter_(mln::util::array<mln::point2d>) e(seed); + + for_all(p) + { + unsigned d = 0; + unsigned min_d = mln_max(unsigned); + unsigned min_l = 0; + + for_all(e) + { + d = distance(p, seed(e.index_())); + + if (min_d > d) + { + min_d = d; + min_l = input(e); + } + } + + output(p) = min_l; + } + + timer.stop(); + + //mln::io::pgm::save(output, "output.pgm"); +} + + +void influence_zone_euclidian_3d(mln::util::timer& timer, + const mln::image3d<mln::value::label_8>& input, + const mln::util::array<mln::point3d>& seed) +{ + mln::image3d<mln::value::label_8> output; + + timer.start(); + + mln::initialize(output, input); + + mln_piter_(mln::image3d<mln::value::label_8>) p(output.domain()); + mln_eiter_(mln::util::array<mln::point3d>) e(seed); + + for_all(p) + { + unsigned d = 0; + unsigned min_d = mln_max(unsigned); + unsigned min_l = 0; + + for_all(e) + { + d = distance(p, seed(e.index_())); + + if (min_d > d) + { + min_d = d; + min_l = input(e); + } + } + + output(p) = min_l; + } + + timer.stop(); +} + +void test_influence_zone_euclidian_2d() +{ + mln::util::timer timer; +/* + // Global test + mln::image2d<float> chart(mln::box2d(mln::point2d(0,0), + mln::point2d(16*16+2,256+1))); + + mln::data::fill(chart, mln::literal::zero); + + for (unsigned i = 1; i < 256+1; ++i) // size + for (unsigned j = 1; j < i*i && j < 16+1; ++j) // seed + { + influence_zone_euclidian_2d(timer,build_input2d(j,i),build_seed2d(j,i)); + std::cout << "xxx|" << i << "x" << i << "|" << j << " = " + << timer.read() << std::endl; + mln::opt::at(chart, j*j,i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart, "chart.sh"); +*/ + + // Test the number of labels + mln::image1d<float> chart_seed(16*16+2); + + mln::data::fill(chart_seed, mln::literal::zero); + + for (unsigned i = 1; i < 16+1; ++i) + { + influence_zone_euclidian_2d(timer,build_input2d(i,256),build_seed2d(i,256)); + std::cout << "xxx|256x256|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed, i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed, "euclidian.2d.seed.sh"); + + // Test the size of the image + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size(256+1); + + mln::data::fill(chart_size, mln::literal::zero); + + for (unsigned i = 16; i < 256+1; ++i) + { + influence_zone_euclidian_2d(timer, build_input2d(4,i), build_seed2d(4,i)); + std::cout << "xxx|" << i << "x" << i << "|16 = " + << timer.read() << std::endl; + mln::opt::at(chart_size, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size, "euclidian.2d.size.sh"); +} + + +void test_influence_zone_euclidian_3d() +{ + mln::util::timer timer; + + // Test the number of labels + mln::image1d<float> chart_seed(5*5*5+2); + + mln::data::fill(chart_seed, mln::literal::zero); + + for (unsigned i = 1; i < 5+1; ++i) + { + influence_zone_euclidian_3d(timer,build_input3d(i,128),build_seed3d(i,128)); + std::cout << "xxx|128x128x128|" << i << " = " << timer.read() << std::endl; + mln::opt::at(chart_seed, i*i*i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_seed, "euclidian.3d.seed.sh"); + + // Test the size of the image + // 1, 2, 4, 8, 16, 32, 64, 128, 256 + mln::image1d<float> chart_size(128+1); + + mln::data::fill(chart_size, mln::literal::zero); + + for (unsigned i = 6; i < 128+1; ++i) + { + influence_zone_euclidian_3d(timer, build_input3d(2,i), build_seed3d(2,i)); + std::cout << "xxx|" << i << "x" << i << "x" << i << "|8 = " + << timer.read() << std::endl; + mln::opt::at(chart_size, i) = timer.read(); + } + + mln::io::plot::save_image_sh(chart_size, "euclidian.3d.size.sh"); +} + + +//------------------------------------------------------------------------------ +// Main +// +// Point de fonctionnement du système [image de taille entre 1 et 256] +// Moins de 16 labels +// +//------------------------------------------------------------------------------ + + +int main() +{ + //test_influence_zone_geodesic_3d(); + //test_influence_zone_front_3d(); + //test_influence_zone_euclidian_3d() + +/* + test_influence_zone_euclidian_2d(); + test_influence_zone_front_2d(); + test_influence_zone_geodesic_2d(); +*/ + test_influence_zone_euclidian_3d(); + //test_influence_zone_geodesic_3d(); + //test_influence_zone_front_3d(); + + return 0; +} -- 1.5.6.5

15 years

last-svn-commit-190-g60fefaa Transform kmean object in a big function and then a canvas.

by green

* green/mln/clustering/kmean_rgb.hh: New library source code. * green/demo/clustering/kmean_rgb/Makefile: New Makefile. * green/demo/clustering/kmean_rgb/kmean_rgb.cc: New demo. code. --- milena/sandbox/ChangeLog | 8 ++ .../histo2d => clustering/kmean_rgb}/Makefile.am | 0 .../green/demo/clustering/kmean_rgb/kmean_rgb.cc | 91 ++++++++++++++++++++ .../sandbox/green/mln/clustering/kmean_rgb.hh | 0 4 files changed, 99 insertions(+), 0 deletions(-) copy milena/sandbox/green/demo/{accu/stat/histo2d => clustering/kmean_rgb}/Makefile.am (100%) create mode 100644 milena/sandbox/green/demo/clustering/kmean_rgb/kmean_rgb.cc copy {scribo => milena}/sandbox/green/mln/clustering/kmean_rgb.hh (100%) diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index 0850294..79f1a7f 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -77,6 +77,14 @@ 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Transform kmean object in a big function and then a canvas. + + * green/mln/clustering/kmean_rgb.hh: New library source code. + * green/demo/clustering/kmean_rgb/Makefile: New Makefile. + * green/demo/clustering/kmean_rgb/kmean_rgb.cc: New demo. code. + +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Benchmark on distance, preliminary work before optimizing kmean. * green/bench/transform/distance/Makefile: New Makefile. diff --git a/milena/sandbox/green/demo/accu/stat/histo2d/Makefile.am b/milena/sandbox/green/demo/clustering/kmean_rgb/Makefile.am similarity index 100% copy from milena/sandbox/green/demo/accu/stat/histo2d/Makefile.am copy to milena/sandbox/green/demo/clustering/kmean_rgb/Makefile.am diff --git a/milena/sandbox/green/demo/clustering/kmean_rgb/kmean_rgb.cc b/milena/sandbox/green/demo/clustering/kmean_rgb/kmean_rgb.cc new file mode 100644 index 0000000..36641b6 --- /dev/null +++ b/milena/sandbox/green/demo/clustering/kmean_rgb/kmean_rgb.cc @@ -0,0 +1,91 @@ +// DEMO ON KMEAN_RGB + +#include <mln/clustering/kmean_rgb.hh> + +#include <iostream> +#include <sstream> + +#include <mln/img_path.hh> + +#include <mln/core/macros.hh> +#include <mln/core/image/image2d.hh> +//#include <mln/core/image/dmorph/image_if.hh> + +#include <mln/data/transform.hh> +#include <mln/fun/v2v/rgb8_to_rgbn.hh> + +#include <mln/io/ppm/load.hh> +//#include <mln/io/pgm/load.hh> +#include <mln/io/pgm/save.hh> +//#include <mln/io/ppm/save.hh> +//#include <mln/io/plot/save_image_sh.hh> + +//#include <mln/pw/value.hh> + +//#include <mln/value/int_u8.hh> +#include <mln/value/label_8.hh> +#include <mln/value/rgb8.hh> + +int main() +{ + const std::string& image = OLENA_IMG_PATH"/house.ppm"; + const unsigned k_center = 3; + const unsigned n_times = 10; + const unsigned watch_dog = 10; + + typedef mln::value::label_8 t_lbl8; + typedef mln::value::rgb8 t_rgb8; + typedef mln::value::rgb<5> t_rgb5; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgb5> t_image2d_rgb5; + typedef mln::image2d<t_lbl8> t_image2d_lbl8; + typedef mln::fun::v2v::rgb8_to_rgbn<5> t_rgb8_to_rgb5; + + t_image2d_rgb8 house_rgb8; + t_image2d_rgb5 house_rgb5; + t_image2d_lbl8 house_lbl8; + + mln::io::ppm::load(house_rgb8, image.c_str()); + house_rgb5 = mln::data::transform(house_rgb8, t_rgb8_to_rgb5()); + + mln::trace::quiet = false; + + house_lbl8 = mln::clustering::kmean_rgb<double,5>(house_rgb5, + k_center, + watch_dog, + n_times); + mln::trace::quiet = true; + + mln::io::pgm::save(house_lbl8, "label.pgm"); + /* + + + + t_kmean kmean(house_rgb5, k_center, watch_dog, n_times); + + + + //kmean.launch_one_time(); + kmean.launch_n_times(); + + // Not safe because we don't test kmean.is_valid() + + t_kmean::t_color_dbg color_img = kmean.get_color_dbg(); + t_kmean::t_mean_dbg mean_img = kmean.get_mean_dbg(); + t_kmean::t_label_dbg label_img = kmean.get_label_dbg(); + t_kmean::t_variance_cnv variance_cnv = kmean.get_variance_cnv(); + t_kmean::t_mean_cnv mean_cnv = kmean.get_mean_cnv(); + + mln::io::ppm::save(mean_img, "mean.ppm"); + mln::io::ppm::save(color_img, "color.ppm"); + mln::io::pgm::save(label_img, "label.pgm"); + + mln::io::plot::save_image_sh(mean_img, "mean.sh"); + mln::io::plot::save_image_sh(mean_cnv, "mean_cnv.sh"); + mln::io::plot::save_image_sh(variance_cnv, "variance_cnv.sh"); + + */ + + return 0; +} + diff --git a/scribo/sandbox/green/mln/clustering/kmean_rgb.hh b/milena/sandbox/green/mln/clustering/kmean_rgb.hh similarity index 100% copy from scribo/sandbox/green/mln/clustering/kmean_rgb.hh copy to milena/sandbox/green/mln/clustering/kmean_rgb.hh -- 1.5.6.5

15 years

last-svn-commit-191-g993461b Test experimentation with regmax code on annoting database.

by green

* green/exp/labeling/regional_maxima/Makefile.am: New Makefile. * green/exp/clustering/regional_maxima/regional_maxima.cc: New directory oriented demonstration code. --- milena/sandbox/ChangeLog | 22 ++- .../labeling/regional_maxima}/Makefile.am | 8 +- .../labeling/regional_maxima/regional_maxima.cc | 156 ++++++++++++++++++++ 3 files changed, 175 insertions(+), 11 deletions(-) copy milena/sandbox/green/{demo/annoting/rgb_64 => exp/labeling/regional_maxima}/Makefile.am (95%) create mode 100644 milena/sandbox/green/exp/labeling/regional_maxima/regional_maxima.cc diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index 79f1a7f..b2c3dba 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -77,38 +77,46 @@ 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Test experimentation with regmax code on annoting database. + + * green/exp/labeling/regional_maxima/Makefile.am: New Makefile. + * green/exp/clustering/regional_maxima/regional_maxima.cc: New directory + oriented demonstration code. + +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Transform kmean object in a big function and then a canvas. * green/mln/clustering/kmean_rgb.hh: New library source code. - * green/demo/clustering/kmean_rgb/Makefile: New Makefile. + * green/demo/clustering/kmean_rgb/Makefile.am: New Makefile. * green/demo/clustering/kmean_rgb/kmean_rgb.cc: New demo. code. 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> Benchmark on distance, preliminary work before optimizing kmean. - * green/bench/transform/distance/Makefile: New Makefile. + * green/bench/transform/distance/Makefile.am: New Makefile. * green/bench/transform/distance/distance.cc: New processing chain. 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> Works on Millet2008 descriptors. - * green/mln/demo/annoting/bic/Makefile: New Makefile. + * green/mln/demo/annoting/bic/Makefile.am: New Makefile. * green/mln/demo/annoting/bic/bic.cc: New impl. of the bic descriptor. - * green/mln/demo/annoting/lep/Makefile: New Makefile. + * green/mln/demo/annoting/lep/Makefile.am: New Makefile. * green/mln/demo/annoting/lep/lep.cc: New impl. of the lep descriptor. - * green/mln/demo/annoting/project/Makefile: New Makefile. + * green/mln/demo/annoting/project/Makefile.am: New Makefile. * green/mln/demo/annoting/project/project.cc: New impl. of the project descriptor. - * green/mln/demo/annoting/rgb_64/Makefile: New Makefile. + * green/mln/demo/annoting/rgb_64/Makefile.am: New Makefile. * green/mln/demo/annoting/rgb_64/rgb_64.cc: New impl. of the rgb_64 descriptor. - * green/mln/demo/annoting/rgb_64_9/Makefile: New Makefile. + * green/mln/demo/annoting/rgb_64_9/Makefile.am: New Makefile. * green/mln/demo/annoting/rgb_64_9/rgb_64_9.cc: New impl. of the rgb_64_9 descriptor. diff --git a/milena/sandbox/green/demo/annoting/rgb_64/Makefile.am b/milena/sandbox/green/exp/labeling/regional_maxima/Makefile.am similarity index 95% copy from milena/sandbox/green/demo/annoting/rgb_64/Makefile.am copy to milena/sandbox/green/exp/labeling/regional_maxima/Makefile.am index 96eafb4..ab76e18 100644 --- a/milena/sandbox/green/demo/annoting/rgb_64/Makefile.am +++ b/milena/sandbox/green/exp/labeling/regional_maxima/Makefile.am @@ -8,15 +8,15 @@ INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green #CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) -CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) -#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) ECHO= echo RM= rm MKDIR= mkdir -p CP= cp -SOURCE_PATTERN= green/demo -BUILD__PATTERN= green/build/demo +SOURCE_PATTERN= green/exp +BUILD__PATTERN= green/build/exp ifeq ($(findstring $(BUILD__PATTERN),$(PWD)), $(BUILD__PATTERN)) diff --git a/milena/sandbox/green/exp/labeling/regional_maxima/regional_maxima.cc b/milena/sandbox/green/exp/labeling/regional_maxima/regional_maxima.cc new file mode 100644 index 0000000..28b6b88 --- /dev/null +++ b/milena/sandbox/green/exp/labeling/regional_maxima/regional_maxima.cc @@ -0,0 +1,156 @@ +// EXPERIMENTATION ON REGIONAL MAXIMA +// COUNTING THE IMAGE COLORS + +#include <iostream> +#include <sstream> +#include <boost/filesystem.hpp> + +#include <mln/img_path.hh> + +#include <mln/accu/math/sum.hh> +#include <mln/accu/math/count.hh> +#include <mln/accu/stat/histo3d_rgb.hh> +#include <mln/accu/stat/mean.hh> +#include <mln/accu/stat/variance.hh> + +#include <mln/algebra/vec.hh> + +#include <mln/arith/diff_abs.hh> + +#include <mln/core/macros.hh> +#include <mln/core/alias/neighb3d.hh> +#include <mln/core/image/image2d.hh> +#include <mln/core/image/image3d.hh> +#include <mln/core/image/dmorph/image_if.hh> +#include <mln/core/routine/initialize.hh> + +#include <mln/data/compute.hh> +#include <mln/data/fill.hh> +#include <mln/data/transform.hh> + +#include <mln/fun/v2v/rgb8_to_rgbn.hh> + +#include <mln/io/pgm/load.hh> +#include <mln/io/pgm/save.hh> +#include <mln/io/ppm/load.hh> +#include <mln/io/ppm/save.hh> + +#include <mln/labeling/regional_maxima.hh> +#include <mln/labeling/mean_values.hh> +#include <mln/labeling/compute.hh> + +#include <mln/literal/colors.hh> + +#include <mln/morpho/opening/volume.hh> +#include <mln/morpho/elementary/dilation.hh> + +#include <mln/opt/at.hh> + +#include <mln/pw/cst.hh> + +#include <mln/util/array.hh> +#include <mln/util/timer.hh> + +#include <mln/value/label_8.hh> +#include <mln/value/rgb8.hh> +#include <mln/value/rgb.hh> +#include <mln/value/int_u.hh> + + +// LISTER UN REPERTOIRE +// ECRIRE UN FICHIER DE SYNTHESE SUR LA CLASSE +// + + +// n < 8, n is the degree of quantification +template <unsigned n> +unsigned count_image_color(const std::string& image) +{ + typedef mln::value::label_8 t_lbl8; + typedef mln::value::int_u8 t_int_u8; + typedef mln::value::rgb8 t_rgb8; + typedef mln::value::rgb<n> t_rgbn; + typedef mln::image3d<t_lbl8> t_image3d_lbl8; + typedef mln::image2d<t_lbl8> t_image2d_lbl8; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgbn> t_image2d_rgbn; + typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image3d<unsigned> t_histo3d; + typedef mln::image2d<unsigned> t_histo2d; + typedef mln::fun::v2v::rgb8_to_rgbn<n> t_rgb8_to_rgbn; + typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + typedef mln::accu::meta::math::count t_count_fun; + + t_image2d_rgb8 input_rgb8; + t_image2d_rgbn input_rgbn; + t_image2d_rgbn output_rgbn; + t_histo3d histo; + t_histo3d opened; + t_image3d_lbl8 label; + t_image2d_lbl8 label_img; + t_image3d_lbl8 dilated; + t_lbl8 n_labels; + + mln::io::ppm::load(input_rgb8, image.c_str()); + + unsigned nb_pixel = input_rgb8.ncols() * input_rgb8.nrows(); + unsigned min_volume = (unsigned)(nb_pixel * 0.054); + + input_rgbn = mln::data::transform(input_rgb8, t_rgb8_to_rgbn()); + // FIXME UTILISER UN PREDICAT COMME FUN::CHESS + histo = mln::data::compute(t_histo3d_fun(), input_rgbn | mln::pw::value(0)); +// return mln::data::compute(t_count_fun(), input_rgbn); + // FIXME REALISER UN COUNT AVEC UN PREDICA SUR L'IMAGE + return nb_pixel; +// opened = mln::morpho::opening::volume(histo, mln::c6(), min_volume); +// label = mln::labeling::regional_maxima(opened, mln::c6(), n_labels); + +// return n_labels; +} + + +int main() +{ + typedef boost::filesystem::path t_path; + //typedef boost::filesystem::initial_path<t_path()> t_init_path; + typedef boost::filesystem::directory_iterator t_iter_path; + + t_path full_path(ANNOTING_TYPED_IMG_PATH); + + std::cout << "entering " << full_path << std::endl; + + if (//1 < argc && + boost::filesystem::exists(full_path) && + boost::filesystem::is_directory(full_path)) + { + boost::filesystem::system_complete(full_path); + const t_iter_path end_iter; + unsigned count = 0; + unsigned sum1 = 0; + unsigned sum2 = 0; + + for (t_iter_path dir_iter(full_path); end_iter != dir_iter; ++dir_iter) + { + unsigned val = count_image_color<5>(dir_iter->path().string()); + + ++count; + sum1 += val; + sum2 += val*val; + + std::cout << dir_iter->path().string() << " => " << val << std::endl; + // FIXME NB COULEURS BRUTES + // FIXME NB DE COULEURS + // FIXME LISTE DES COULEURS + // IMPORTANCES + } + + unsigned mean = sum1 / count; + unsigned var = sum2 / count - mean * mean; + + std::cout << "mean : " << mean << std::endl; + std::cout << "var : " << var << std::endl; + } + + return 0; +} + -- 1.5.6.5

15 years

last-svn-commit-192-ge6a836c 2009-12-02 Yann Jacquelet <jacquelet@lrde.epita.fr>

by green

Optimize regional maxima processing for statistical counts and outputs. * green/demo/labeling/regional_maxima/Makefile.am: Add some compilation directives. * green/demo/labeling/regional_maxima/regional_maxima.cc (t_channel,t_labeling_rgbn,label_image,unquant,print_count2): New. * green/demo/labeling/regional_maxima/regional_maxima.cc (print_count, merge, do_demo) : Update. --- milena/sandbox/ChangeLog | 14 +- .../demo/labeling/regional_maxima/Makefile.am | 2 + .../labeling/regional_maxima/regional_maxima.cc | 661 ++++++++++++++------ 3 files changed, 471 insertions(+), 206 deletions(-) diff --git a/milena/sandbox/ChangeLog b/milena/sandbox/ChangeLog index b2c3dba..89443b8 100644 --- a/milena/sandbox/ChangeLog +++ b/milena/sandbox/ChangeLog @@ -77,10 +77,22 @@ 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Optimize regional maxima processing for statistical counts and outputs. + + * green/demo/labeling/regional_maxima/Makefile.am: Add some compilation + directives. + * green/demo/labeling/regional_maxima/regional_maxima.cc + (t_channel,t_labeling_rgbn,label_image,unquant,print_count2): New. + * green/demo/labeling/regional_maxima/regional_maxima.cc + (print_count, merge, do_demo) : Update. + + +2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> + Test experimentation with regmax code on annoting database. * green/exp/labeling/regional_maxima/Makefile.am: New Makefile. - * green/exp/clustering/regional_maxima/regional_maxima.cc: New directory + * green/exp/labeling/regional_maxima/regional_maxima.cc: New directory oriented demonstration code. 2009-12-02 Yann Jacquelet <jacquelet(a)lrde.epita.fr> diff --git a/milena/sandbox/green/demo/labeling/regional_maxima/Makefile.am b/milena/sandbox/green/demo/labeling/regional_maxima/Makefile.am index 91230b6..1dd1cfb 100644 --- a/milena/sandbox/green/demo/labeling/regional_maxima/Makefile.am +++ b/milena/sandbox/green/demo/labeling/regional_maxima/Makefile.am @@ -8,6 +8,8 @@ INCLUDES= -I$(HOME)/svn/oln/trunk/milena/sandbox/green CXXFLAGS= -ggdb -O0 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O1 -Wall -W -pedantic -ansi -pipe $(INCLUDES) +#CXXFLAGS= -DNDEBUG -O3 -Wall -W -pedantic -ansi -pipe $(INCLUDES) ECHO= echo RM= rm MKDIR= mkdir -p diff --git a/milena/sandbox/green/demo/labeling/regional_maxima/regional_maxima.cc b/milena/sandbox/green/demo/labeling/regional_maxima/regional_maxima.cc index 34801ed..266fbfe 100644 --- a/milena/sandbox/green/demo/labeling/regional_maxima/regional_maxima.cc +++ b/milena/sandbox/green/demo/labeling/regional_maxima/regional_maxima.cc @@ -1,66 +1,257 @@ // DEMO ON REGIONAL MAXIMA -#include <mln/clustering/kmean2d.hh> - #include <iostream> #include <sstream> #include <mln/img_path.hh> -#include <mln/pw/value.hh> -#include <mln/value/label_8.hh> -#include <mln/value/rgb8.hh> +#include <mln/accu/math/sum.hh> +#include <mln/accu/stat/histo3d_rgb.hh> +#include <mln/accu/stat/mean.hh> +#include <mln/accu/stat/variance.hh> + +#include <mln/algebra/vec.hh> + +// #include <mln/arith/revert.hh> +#include <mln/arith/diff_abs.hh> #include <mln/core/macros.hh> +#include <mln/core/alias/neighb3d.hh> #include <mln/core/image/image2d.hh> #include <mln/core/image/image3d.hh> +#include <mln/core/routine/initialize.hh> +#include <mln/data/compute.hh> +#include <mln/data/fill.hh> +// #include <mln/data/stretch.hh> #include <mln/data/transform.hh> + +// #include <mln/display/display_histo.hh> + #include <mln/fun/v2v/rgb8_to_rgbn.hh> -#include <mln/io/ppm/load.hh> #include <mln/io/pgm/load.hh> #include <mln/io/pgm/save.hh> +#include <mln/io/ppm/load.hh> #include <mln/io/ppm/save.hh> -#include <mln/io/plot/save_image_sh.hh> - -#include <mln/accu/stat/histo3d_rgb.hh> -#include <mln/data/compute.hh> +// #include <mln/io/plot/save_image_sh.hh> -#include <mln/arith/revert.hh> #include <mln/labeling/regional_maxima.hh> -#include <mln/core/alias/neighb3d.hh> -#include <mln/core/routine/initialize.hh> +#include <mln/labeling/mean_values.hh> +#include <mln/labeling/compute.hh> + #include <mln/literal/colors.hh> -#include <mln/morpho/watershed/flooding.hh> + +// #include <mln/morpho/watershed/flooding.hh> #include <mln/morpho/opening/volume.hh> #include <mln/morpho/elementary/dilation.hh> -#include <mln/data/stretch.hh> -#include <mln/display/display_histo.hh> -#include <mln/labeling/mean_values.hh> +#include <mln/opt/at.hh> + +// #include <mln/pw/value.hh> + +#include <mln/util/array.hh> +#include <mln/util/timer.hh> + +#include <mln/value/label_8.hh> +#include <mln/value/rgb8.hh> +#include <mln/value/rgb.hh> +#include <mln/value/int_u.hh> + + +template <unsigned n, unsigned ch> +struct t_channel : mln::Function_v2v< t_channel<n,ch> > +{ + typedef mln::value::rgb<n> t_rgbn; + typedef mln::value::int_u<n> t_int_un; + typedef t_rgbn argument; + typedef t_int_un result; + + result operator()(const argument& c) const + { + result tmp; + + switch(ch) + { + case 0: tmp = c.red(); break; + case 1: tmp = c.green(); break; + case 2: tmp = c.blue(); break; + } + + return tmp; + } +}; + + +// version optimisée de labeling + +template <unsigned n> +struct t_labeling_rgbn : mln::Function_v2v< t_labeling_rgbn<n> > +{ + typedef mln::value::rgb<n> t_rgbn; + typedef mln::value::label_8 t_lbl8; + typedef t_rgbn argument; + typedef t_lbl8 result; + typedef mln::image3d<t_lbl8> t_label; + + const t_label& _label; + + t_labeling_rgbn(const t_label& label) : _label(label) {} + + result operator()(const argument& c) const + { + t_lbl8 tmp = mln::opt::at(_label, c.blue(), c.red(), c.green()); + + return tmp; + } +}; + +// version non optimisée de label + +template <unsigned n> mln::image2d<mln::value::label_8> -label_image(const mln::image2d<mln::value::rgb<5> >& input, - const mln::image3d<mln::value::label_8>& label) +label_image(const mln::image2d< mln::value::rgb<n> >& input, + const mln::image3d< mln::value::label_8>& label) { - mln::image2d<mln::value::label_8> output(input.nrows(), - input.ncols()); + mln::image2d<mln::value::label_8> output; + + initialize(output, input); - mln_piter_(mln::image2d<mln::value::label_8>) po(output.domain()); - mln_piter_(mln::image2d<mln::value::rgb<5> >) pi(input.domain()); + mln_piter(mln::image2d< mln::value::label_8 >) po(output.domain()); + mln_piter(mln::image2d< mln::value::rgb<n> >) pi(input.domain()); for_all_2(po, pi) { - output(po) = label(mln::point3d(input(pi).blue(), - input(pi).red(), - input(pi).green())); + const mln::value::rgb<n>& vi = input(pi); + + output(po) = mln::opt::at(label, vi.blue(), vi.red(), vi.green()); } return output; } +template <unsigned n> +unsigned unquant(const float& value) +{ + unsigned size = pow(2,(8-n)); + unsigned result = value * size; + + return result; +} + +template <unsigned n> +void print_count2(const mln::image2d<mln::value::rgb<n> >& input_rgbn, + const mln::image3d<unsigned>& histo, + const mln::image3d<mln::value::label_8>& label, + const unsigned n_labels) +{ + typedef mln::value::label_8 t_lbl8; + typedef mln::value::rgb<n> t_rgbn; + typedef mln::value::int_u<n> t_int_un; + typedef mln::algebra::vec<3,float> t_vec3f; + typedef mln::accu::math::sum<unsigned,unsigned> t_sum; + typedef mln::accu::stat::mean<t_vec3f,t_vec3f,t_vec3f> t_mean; + typedef mln::accu::math::sum<t_vec3f,t_vec3f> t_diff; + typedef mln::accu::stat::variance<float,float,float> t_var; + typedef mln::image2d<t_lbl8> t_image2d_lbl8; + typedef mln::image2d<t_rgbn> t_image2d_rgbn; + typedef mln::image2d<t_int_un> t_image2d_int_un; + + mln::util::array<t_mean> mean((unsigned)(n_labels)+1); +// mln::util::array<t_diff> diff((unsigned)(n_labels)+1); + mln::util::array<t_var> var_red((unsigned)(n_labels)+1); + mln::util::array<t_var> var_green((unsigned)(n_labels)+1); + mln::util::array<t_var> var_blue((unsigned)(n_labels)+1); + mln::util::array<t_sum> count((unsigned)(n_labels)+1); + mln::util::array<float> abs((unsigned)(n_labels)+1); + mln::util::array<float> rel((unsigned)(n_labels)+1); + unsigned nb = 0; + + for (unsigned i = 0; i <= n_labels; ++i) + { + count(i).init(); + mean(i).init(); +// diff(i).init(); + var_red(i).init(); + var_green(i).init(); + var_blue(i).init(); + abs[i] = 0.0; + rel[i] = 0.0; + } + + mln::labeling::compute(count, histo, label, n_labels); + + for (unsigned i = 0; i <= n_labels; ++i) + { + unsigned c = count[i]; + nb += c; + } + + for (unsigned i = 0; i <= n_labels; ++i) + if (0 < count[i]) + { + abs[i] = ((float)count[i] / nb)*100.0; + rel[i] = ((float)count[i] / (nb - count[0]))*100.0; + } + + t_image2d_lbl8 label_img = mln::data::transform(input_rgbn, + t_labeling_rgbn<n>(label)); + + mln::labeling::compute(mean, input_rgbn, label_img, n_labels); + + +// t_image2d_rgbn mean_rgbn = mln::labeling::mean_values(input_rgbn, +// label_img, +// n_labels); +// t_image2d_int_un mean_red =mln::data::transform(mean_rgbn,t_channel<n>()); +// t_image2d_int_un mean_green=mln::data::transform(mean_rgbn,t_channel<n>()); +// t_image2d_int_un mean_blue =mln::data::transform(mean_rgbn,t_channel<n>()); + + t_image2d_int_un input_red =mln::data::transform(input_rgbn, + t_channel<n,0>()); + t_image2d_int_un input_green=mln::data::transform(input_rgbn, + t_channel<n,1>()); + t_image2d_int_un input_blue =mln::data::transform(input_rgbn, + t_channel<n,2>()); + +// FIXME VARIANCE NEGATIVE DANS LES RESULTATS !! + +// mln::labeling::compute(var_red, input_rgbn, label_img, n_labels); +// mln::labeling::compute(var_green, input_rgbn, label_img, n_labels); +// mln::labeling::compute(var_blue, input_rgbn, label_img, n_labels); + +// t_image2d_rgbn diff_rgbn = mln::arith::diff_abs(input_rgbn, mean_rgbn); + + std::cout << mln::labeling::compute(var_red, input_red, label_img, n_labels)(29) << std::endl; +// mln::labeling::compute(t_var(), input_red, label_img, n_labels); + mln::labeling::compute(var_green, input_green, label_img, n_labels); + mln::labeling::compute(var_blue, input_blue, label_img, n_labels); + + for (unsigned i = 0; i <= n_labels; ++i) + { + if (5.0 < abs[i] && 10.0 < rel[i]) + { + const t_vec3f& mean_v = mean[i]; +// const t_vec3f& diff_v = diff[i]; + + std::cout << i << " :[" << unquant<n>(mean_v[0]) +// << "(" << diff_v[0] + << "(" << var_red[i] + << ")," << unquant<n>(mean_v[1]) +// << "(" << diff_v[1] + << "(" << var_green[i] + << ")," << unquant<n>(mean_v[2]) +// << "(" << diff_v[2] + << "(" << var_blue[i] + << ")]- " << count[i] + << " - " << abs[i] + << " - " << rel[i] + << std::endl; + } + } +} void print_count(const mln::image3d<unsigned>& histo, const mln::image3d<mln::value::label_8>& label, @@ -70,66 +261,116 @@ void print_count(const mln::image3d<unsigned>& histo, unsigned red[255]; unsigned green[255]; unsigned blue[255]; + unsigned nb = 0; + unsigned tmp = 0; - for (unsigned i = 0; i < n_labels; ++i) + for (unsigned i = 0; i <= n_labels; ++i) { count[i] = 0; - red[i] = 0.0; - green[i] = 0.0; - blue[i] = 0.0; + red[i] = 0; + green[i] = 0; + blue[i] = 0; } - mln_piter_(mln::image3d<unsigned>) ph(histo.domain()); - mln_piter_(mln::image3d<mln::value::label_8>) pl(label.domain()); + mln_piter_(mln::image3d<unsigned>) p(histo.domain()); - for_all_2(ph, pl) + for_all(p) { - count[label(pl)] += histo(ph); - red[label(pl)] += histo(ph) * pl.row(); - green[label(pl)] += histo(ph) * pl.col(); - blue[label(pl)] += histo(ph) * pl.sli(); + count[label(p)] += histo(p); + red[label(p)] += histo(p) * p.row(); + green[label(p)] += histo(p) * p.col(); + blue[label(p)] += histo(p) * p.sli(); + nb += histo(p); + ++tmp; } std::cout << std::endl; - for (unsigned i = 0; i < n_labels; ++i) - { - red[i] = red[i] / count[i]; - green[i] = green[i] / count[i]; - blue[i] = blue[i] / count[i]; + std::cout << "nb : " << nb << std::endl; + std::cout << "tmp : " << tmp << std::endl; - std::cout << "count[" << i << "](" - << red[i] << ", " << green[i] << ", " - << blue[i] << ") = " << count[i] << std::endl; - } + std::cout << std::endl; + + for (unsigned i = 0; i <= n_labels; ++i) + if (0 < count[i]) + { + float percentage_abs = ((float)count[i] / nb)*100.0; + float percentage_rel = ((float)count[i] / (nb - count[0]))*100.0; + + red[i] = red[i] / count[i]; + green[i] = green[i] / count[i]; + blue[i] = blue[i] / count[i]; + + std::cout << "count[" << i << "](" + << red[i] << ", " << green[i] << ", " + << blue[i] << ") = " << count[i] << "(" + << percentage_abs << "%)"; + + if (0 < i) + std::cout << "[" << percentage_rel << "%]"; + + std::cout << std::endl; + } std::cout << std::endl; } -mln::image2d<mln::value::rgb<5> > -merge(const mln::image2d<mln::value::rgb<5> >& input, - const mln::image3d<mln::value::label_8>& label) +// Version optimisée de merge + +template <unsigned n> +struct t_merge_lbl8_with_rgbn : mln::Function_v2v< t_merge_lbl8_with_rgbn<n> > { - mln::image2d<mln::value::rgb<5> > output; + typedef mln::value::rgb<n> t_rgbn; + typedef mln::value::label_8 t_lbl8; + typedef t_rgbn argument; + typedef t_rgbn result; + typedef mln::image3d<t_lbl8> t_label; + + const t_label& _label; + + t_merge_lbl8_with_rgbn(const t_label& label) : _label(label) {} + + result operator()(const argument& c) const + { + t_rgbn tmp = c; + + if (0 == mln::opt::at(_label, c.blue(), c.red(), c.green())) + { + tmp = mln::literal::black; + } + + return tmp; + } +}; + +// version non optimisée de merge + +template <unsigned n> +mln::image2d< mln::value::rgb<n> > +merge(const mln::image2d< mln::value::rgb<n> >& input, + const mln::image3d< mln::value::label_8 >& label) +{ + mln::image2d<mln::value::rgb<n> > output; mln::initialize(output, input); + // mln::data::fill(output, mln::literal::green); - mln_piter_(mln::image2d<mln::value::rgb<5> >) pi(input.domain()); - mln_piter_(mln::image2d<mln::value::rgb<5> >) po(output.domain()); + mln_piter(mln::image2d< mln::value::rgb<n> >) pi(input.domain()); + mln_piter(mln::image2d< mln::value::rgb<n> >) po(output.domain()); for_all_2(pi, po) { - if (0 < label(mln::point3d(input(pi).blue(), - input(pi).red(), - input(pi).green()))) + const mln::value::rgb<n>& vi = input(pi); + mln::value::rgb<n>& vo = output(po); + + if (0 < mln::opt::at(label,vi.blue(),vi.red(),vi.green())) { - output(po).red() = input(pi).red(); - output(po).green() = input(pi).green(); - output(po).blue() = input(pi).blue(); + vo.red() = vi.red(); + vo.green() = vi.green(); + vo.blue() = vi.blue(); } else - output(po) = mln::literal::red; - //output(po) = mln::literal::black; + vo = mln::literal::black; } return output; @@ -137,78 +378,180 @@ merge(const mln::image2d<mln::value::rgb<5> >& input, // -// Regional maxima image processing chain. -// RGB8 +// Theo regional maxima image processing chain. // -void do_demo(const std::string& image) + +// FIXME C'est la dilatation qui fait apparaître des classes < min_volume. +// Une couleur se dilate au détriment du fond et des autres couleurs. + +int main2() { + const unsigned min_volume = 1000; + //const std::string& image = OLENA_IMG_PATH"/fly.ppm"; + const std::string& image = SCRIBO_PPM_IMG_PATH"/mp00082c_50p.ppm"; + //const std::string& image = OLENA_IMG_PATH"/tiny.ppm"; + typedef mln::value::label_8 t_lbl8; - typedef mln::value::int_u8 t_int_u8; typedef mln::value::rgb8 t_rgb8; typedef mln::value::rgb<5> t_rgb5; - typedef mln::image3d<t_lbl8> t_image3d_lbl8; - typedef mln::image2d<t_lbl8> t_image2d_lbl8; typedef mln::image2d<t_rgb8> t_image2d_rgb8; typedef mln::image2d<t_rgb5> t_image2d_rgb5; - typedef mln::image2d<t_int_u8> t_image2d_int_u8; - typedef mln::image3d<unsigned> t_histo3d; - typedef mln::image2d<unsigned> t_histo2d; - typedef mln::fun::v2v::rgb8_to_rgbn<5> t_rgb8_to_rgbn; + typedef mln::image3d<t_lbl8> t_image3d_lbl8; + typedef mln::image3d<unsigned> t_image3d_unsigned; + typedef mln::fun::v2v::rgb8_to_rgbn<5> t_rgb8_to_rgb5; typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + typedef mln::accu::math::sum<unsigned,unsigned> t_sum; + + mln::util::timer timer; + + // START IMAGE PROCESSING CHAIN + timer.start(); t_image2d_rgb8 input_rgb8; t_image2d_rgb5 input_rgb5; - t_image2d_rgb5 output_rgb5; - t_image2d_rgb5 mean_rgb5; - t_histo3d histo; - t_image2d_int_u8 projected; - t_image2d_int_u8 filtered; - t_histo3d opened; + t_image3d_unsigned histo; + t_image3d_unsigned opened; t_image3d_lbl8 label; - t_image2d_lbl8 label_img; t_image3d_lbl8 dilated; t_lbl8 n_labels; - t_rgb5 value_rgb5; - // IMAGE LOADING PHASE - std::cout << "Image loading phase ..." << std::endl; mln::io::ppm::load(input_rgb8, image.c_str()); - input_rgb5 = mln::data::transform(input_rgb8, t_rgb8_to_rgbn()); - mln::io::ppm::save(input_rgb5, "input_rgb5.ppm"); + input_rgb5 = mln::data::transform(input_rgb8, t_rgb8_to_rgb5()); + histo = mln::data::compute(t_histo3d_fun(), input_rgb5); + opened = mln::morpho::opening::volume(histo, mln::c6(), min_volume); + label = mln::labeling::regional_maxima(opened, mln::c6(), n_labels); + dilated = mln::morpho::elementary::dilation(label, mln::c26()); + + mln::util::array<t_sum> length((unsigned)(n_labels)+1); + + for (unsigned i = 0; i <= n_labels; ++i) + length(i).init(); + mln::labeling::compute(length, histo, dilated, n_labels); - // HISTO COMPUTING PHASE - std::cout << "Histo computing phase ..." << std::endl; - histo = mln::data::compute(t_histo3d_fun(), input_rgb5); - projected = mln::display::display_histo3d_unsigned(histo); + timer.stop(); + // STOP IMAGE PROCESSING CHAIN + + std::cout << "Done in " << timer.read() << " ms" << std::endl; + std::cout << "n_labels : " << n_labels << std::endl; + + for (unsigned i = 0; i <= n_labels; ++i) + { + std::cout << "count[" << i << "] = " << length[i] << std::endl; + } + + print_count(histo,label,n_labels); - mln::io::pgm::save(projected, "histo.pgm"); //mln::io::plot::save_image_sh(histo, "histo.sh"); + //mln::io::plot::save_image_sh(histo, "opened.sh"); + //mln::io::plot::save_image_sh(label, "label.sh"); - // HISTO FILTERING PHASE - std::cout << "Histo filtering phase ..." << std::endl;; - opened = mln::morpho::opening::volume(histo, mln::c6(), 1000); - mln::io::plot::save_image_sh(opened, "opened.sh"); - filtered = mln::display::display_histo3d_unsigned(opened); - mln::io::pgm::save(filtered, "filtered.pgm"); + return 0; +} +// n < 8, n is the degree of quantification +template <unsigned n> +void demo() +{ + const unsigned min_volume = 1000; + //const std::string& image = OLENA_IMG_PATH"/fly.ppm"; + const std::string& image = SCRIBO_PPM_IMG_PATH"/mp00082c_50p.ppm"; + //const std::string& image = OLENA_IMG_PATH"/tiny.ppm"; - // HISTO LABELING PHASE - std::cout << "Histo labeling phase ..." << std::endl; - label = mln::labeling::regional_maxima(opened, mln::c6(), n_labels); - mln::io::plot::save_image_sh(label, "label.sh"); + typedef mln::value::label_8 t_lbl8; + typedef mln::value::int_u8 t_int_u8; + typedef mln::value::rgb8 t_rgb8; + typedef mln::value::rgb<n> t_rgbn; + typedef mln::image3d<t_lbl8> t_image3d_lbl8; + typedef mln::image2d<t_lbl8> t_image2d_lbl8; + typedef mln::image2d<t_rgb8> t_image2d_rgb8; + typedef mln::image2d<t_rgbn> t_image2d_rgbn; + typedef mln::image2d<t_int_u8> t_image2d_int_u8; + typedef mln::image3d<unsigned> t_histo3d; + typedef mln::image2d<unsigned> t_histo2d; + typedef mln::fun::v2v::rgb8_to_rgbn<n> t_rgb8_to_rgbn; + typedef mln::accu::meta::stat::histo3d_rgb t_histo3d_fun; + mln::util::timer timer; - // HISTO DILATING PHASE - std::cout << "Histo dilating phase ..." << std::endl; - dilated = mln::morpho::elementary::dilation(label, mln::c18()); - mln::io::plot::save_image_sh(dilated, "dilated.sh"); + // START OF IMAGE PROCESSING CHAIN + timer.start(); - // PRINTING PHASE - std::cout << "Labels : " << n_labels << std::endl; - print_count(histo, dilated, n_labels); + t_image2d_rgb8 input_rgb8; + t_image2d_rgbn input_rgbn; + t_image2d_rgbn output_rgbn; + // t_image2d_rgbn mean_rgb5; + t_histo3d histo; + // t_image2d_int_u8 projected; + // t_image2d_int_u8 filtered; + t_histo3d opened; + t_image3d_lbl8 label; + t_image2d_lbl8 label_img; + t_image3d_lbl8 dilated; + t_lbl8 n_labels; + // t_rgbn value_rgbn; + mln::io::ppm::load(input_rgb8, image.c_str()); + input_rgbn = mln::data::transform(input_rgb8, t_rgb8_to_rgbn()); + histo = mln::data::compute(t_histo3d_fun(), input_rgbn); + opened = mln::morpho::opening::volume(histo, mln::c6(), min_volume); + label = mln::labeling::regional_maxima(opened, mln::c6(), n_labels); + dilated = mln::morpho::elementary::dilation(label, mln::c26()); + + timer.stop(); + // END OF IMAGE PROCESSING CHAIN + + std::ostringstream name; + std::ostringstream name2; + std::ostringstream name3; + + name << "input_rgb" << n << ".ppm"; + name2 << "output_rgb" << n << ".ppm"; + name3 << "label_img" << n << ".pgm"; + + std::cout << "Done in : " << timer.read() << " s" << std::endl; + std::cout << "Labels : " << n_labels << std::endl; + std::cout << "Name : " << name.str() << std::endl; + + mln::io::ppm::save(input_rgbn, name.str()); + + mln::util::timer timer2; + + timer2.start(); + print_count2(input_rgbn, histo, dilated, n_labels); + timer2.stop(); + std::cout << "timer2 : " << timer2.read() << std::endl; + output_rgbn = mln::data::transform(input_rgbn, + t_merge_lbl8_with_rgbn<n>(label)); + // output_rgbn = merge<n>(input_rgbn, dilated); + mln::io::ppm::save(output_rgbn, name2.str()); + + label_img = mln::data::transform(input_rgbn, + t_labeling_rgbn<n>(label)); + // label_img = label_image<n>(input_rgbn, dilated); + mln::io::pgm::save(label_img, name3.str()); + + + // localiser les couleurs sur l'image (fond en black, le reste) + + // La dilatation englobe beaucoup plus de couleur, mais celles-ci ne + // sont pas forcément présentes dans l'image. Du coup, les classes ne + // bougent pas démeusurément. + +// mln::io::ppm::save(input_rgb5, "input_rgb5.ppm"); +// mln::io::plot::save_image_sh(input_rgb8, "input_rgb8.sh"); +// mln::io::plot::save_image_sh(input_rgb5, "input_rgb5.sh"); +// projected = mln::display::display_histo3d_unsigned(histo); +// mln::io::pgm::save(projected, "histo.pgm"); +// mln::io::plot::save_image_sh(histo, "histo.sh"); +// mln::io::plot::save_image_sh(opened, "opened.sh"); +// filtered = mln::display::display_histo3d_unsigned(opened); +// mln::io::pgm::save(filtered, "filtered.pgm"); +// mln::io::plot::save_image_sh(label, "label.sh"); + // mln::io::plot::save_image_sh(dilated, "dilated.sh"); + + /* // OUTPUT PHASE std::cout << "Output phase ..." << std::endl; output_rgb5 = merge(input_rgb5, dilated); @@ -221,113 +564,21 @@ void do_demo(const std::string& image) label_img = label_image(input_rgb5, dilated); mln::io::pgm::save(label_img, "label_img.pgm"); - // BUILDING MEAN VALUES std::cout << "Building mean values phase ..." << std::endl; mean_rgb5 = mln::labeling::mean_values(input_rgb5, label_img, n_labels); mln::io::ppm::save(mean_rgb5, "mean.ppm"); + */ } -void demo(const std::string& image = SCRIBO_PPM_IMG_PATH"/mp00082c_50p.ppm", - //const std::string& image = OLENA_IMG_PATH"/house.ppm", - const unsigned k_center = 2, - //const unsigned k_center = 3, - const unsigned n_times = 10, - const unsigned watch_dog = 10) -{ - std::cout << "----------------------------------------" << std::endl; - std::cout << "Launching the demo with these parameters" << std::endl; - std::cout << "image : " << image << std::endl; - std::cout << "k_center : " << k_center << std::endl; - std::cout << "n_times : " << n_times << std::endl; - std::cout << "watch_dog : " << watch_dog << std::endl; - std::cout << "----------------------------------------" << std::endl; - - do_demo(image); -} - -void usage(const int argc, const char *args[]) -{ - std::cout << "----------------------------------------" << std::endl; - std::cout << "argc : " << argc << std::endl; - - for (int i = 0; i < argc; ++i) - std::cout << "args[" << i << "] : " << args[i] << std::endl; - - std::cout << "----------------------------------------" << std::endl; - std::cout << "usage: kmean2d [image [k_center [n_times [watch_dog]]]]" - << std::endl; - std::cout << "pbm image (points to work with)" << std::endl; - std::cout << "unsigned k_center (number of centers)" << std::endl; - std::cout << "unsigned n_times (number of launching)" << std::endl; - std::cout << "unsigned watch_dog (convergence loop)" << std::endl; - std::cout << "----------------------------------------" << std::endl; -} - -bool char_to_unsigned(const bool status, const char *arg, unsigned& val) -{ - bool result = false; - - if (status) - { - std::istringstream arg_stream(arg); - - arg_stream >> val; - - result = !arg_stream.fail(); - } - - return result; -} - -bool char_to_string(const bool status, const char *arg, std::string& val) -{ - bool result = false; - - if (status) - { - std::istringstream arg_stream(arg); - - arg_stream >> val; - - return !arg_stream.fail(); - } - - return result; -} - -int main(const int argc, const char *args[]) +int main() { - std::string image("top"); - unsigned k_center; - unsigned watch_dog; - unsigned n_times; - bool status = true; - - switch (argc) - { - case 5: status = char_to_unsigned(status, args[4], watch_dog); - case 4: status = char_to_unsigned(status, args[3], n_times); - case 3: status = char_to_unsigned(status, args[2], k_center); - case 2: status = char_to_string(status, args[1], image); break; - case 1: status = true; break; - default: status = false; - } - - if (status) - { - switch (argc) - { - case 1: demo(); break; - case 2: demo(image); break; - case 3: demo(image, k_center); break; - case 4: demo(image, k_center, n_times); break; - case 5: demo(image, k_center, n_times, watch_dog); break; - } - } - else - usage(argc, args); - - return 0; + demo<2>(); // 2.26 s + demo<3>(); // 2.29 s + demo<4>(); // 2.29 s + demo<5>(); // 2.37 s + demo<6>(); // 3.19 s + demo<7>(); // 11.43 s + demo<8>(); // 96.19 s } -- 1.5.6.5

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