* doc/tutorial/doxyfile_tuto.local: new doxyfile. Generate only the tutorial. * doc/tutorial/figures/extend-1.ppm, * doc/tutorial/figures/extend-2.ppm, * doc/tutorial/figures/extend-3.ppm, * doc/tutorial/figures/extend-4.ppm, * doc/tutorial/figures/extend-5.ppm, * doc/tutorial/outputs/extend.txt: new reference files for the new example. * doc/tutorial/samples/Makefile.am, * doc/tutorial/samples/extend.cc: new example for the tutorial, related to the image extension. * doc/tutorial/samples/ima2d-rot.cc: use extended_to(). * doc/tutorial/tools/todoxygen.sh: support keyword subsubsection. * doc/tutorial/tutorial.tex: add more details about image extension. --- milena/ChangeLog | 25 +++ milena/doc/tutorial/doxyfile_tuto.local | 342 ++++++++++++++++++++++++++++++ milena/doc/tutorial/figures/extend-1.ppm | Bin 0 -> 12406 bytes milena/doc/tutorial/figures/extend-2.ppm | Bin 0 -> 16546 bytes milena/doc/tutorial/figures/extend-3.ppm | Bin 0 -> 16546 bytes milena/doc/tutorial/figures/extend-4.ppm | 7 + milena/doc/tutorial/figures/extend-5.ppm | Bin 0 -> 12406 bytes milena/doc/tutorial/samples/Makefile.am | 2 + milena/doc/tutorial/samples/extend.cc | 94 ++++++++ milena/doc/tutorial/samples/ima2d-rot.cc | 2 +- milena/doc/tutorial/tools/todoxygen.sh | 2 +- milena/doc/tutorial/tutorial.tex | 80 +++++++- 12 files changed, 545 insertions(+), 9 deletions(-) create mode 100644 milena/doc/tutorial/doxyfile_tuto.local create mode 100644 milena/doc/tutorial/figures/extend-1.ppm create mode 100644 milena/doc/tutorial/figures/extend-2.ppm create mode 100644 milena/doc/tutorial/figures/extend-3.ppm create mode 100644 milena/doc/tutorial/figures/extend-4.ppm create mode 100644 milena/doc/tutorial/figures/extend-5.ppm create mode 100644 milena/doc/tutorial/outputs/extend.txt create mode 100644 milena/doc/tutorial/samples/extend.cc diff --git a/milena/ChangeLog b/milena/ChangeLog index b2951e8..81868ae 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,3 +1,28 @@ +2009-02-24 Guillaume Lazzara <z@lrde.epita.fr> + + Update tutorial. + + * doc/tutorial/doxyfile_tuto.local: new doxyfile. Generate only the + tutorial. + + * doc/tutorial/figures/extend-1.ppm, + * doc/tutorial/figures/extend-2.ppm, + * doc/tutorial/figures/extend-3.ppm, + * doc/tutorial/figures/extend-4.ppm, + * doc/tutorial/figures/extend-5.ppm, + * doc/tutorial/outputs/extend.txt: new reference files for the new + example. + + * doc/tutorial/samples/Makefile.am, + * doc/tutorial/samples/extend.cc: new example for the tutorial, + related to the image extension. + + * doc/tutorial/samples/ima2d-rot.cc: use extended_to(). + + * doc/tutorial/tools/todoxygen.sh: support keyword subsubsection. + + * doc/tutorial/tutorial.tex: add more details about image extension. + 2009-02-23 Fabien Freling <fabien.freling@lrde.epita.fr> Add DICOM support. diff --git a/milena/doc/tutorial/doxyfile_tuto.local b/milena/doc/tutorial/doxyfile_tuto.local new file mode 100644 index 0000000..a026b2e --- /dev/null +++ b/milena/doc/tutorial/doxyfile_tuto.local @@ -0,0 +1,342 @@ +# Doxyfile 1.5.6 + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- +DOXYFILE_ENCODING = UTF-8 +PROJECT_NAME = "Milena (Olena)" +PROJECT_NUMBER = "User documentation 1.0 $Id: ChangeLog 2542 2008-10-10 13:35:03Z ballas $" +OUTPUT_DIRECTORY = ./user/ +CREATE_SUBDIRS = YES +OUTPUT_LANGUAGE = English +BRIEF_MEMBER_DESC = YES +REPEAT_BRIEF = YES +ABBREVIATE_BRIEF = +ALWAYS_DETAILED_SEC = YES +INLINE_INHERITED_MEMB = YES +FULL_PATH_NAMES = YES +STRIP_FROM_PATH = ../../../milena \ + ../../milena +STRIP_FROM_INC_PATH = +SHORT_NAMES = NO +JAVADOC_AUTOBRIEF = NO +QT_AUTOBRIEF = NO +MULTILINE_CPP_IS_BRIEF = NO +DETAILS_AT_TOP = NO +INHERIT_DOCS = YES +SEPARATE_MEMBER_PAGES = NO +TAB_SIZE = 8 +ALIASES = +OPTIMIZE_OUTPUT_FOR_C = NO +OPTIMIZE_OUTPUT_JAVA = NO +OPTIMIZE_FOR_FORTRAN = NO +OPTIMIZE_OUTPUT_VHDL = NO +BUILTIN_STL_SUPPORT = YES +CPP_CLI_SUPPORT = NO +SIP_SUPPORT = NO +IDL_PROPERTY_SUPPORT = YES +DISTRIBUTE_GROUP_DOC = NO +SUBGROUPING = YES +TYPEDEF_HIDES_STRUCT = NO +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- +EXTRACT_ALL = NO +EXTRACT_PRIVATE = NO +EXTRACT_STATIC = NO +EXTRACT_LOCAL_CLASSES = NO +EXTRACT_LOCAL_METHODS = NO +EXTRACT_ANON_NSPACES = NO +HIDE_UNDOC_MEMBERS = YES +HIDE_UNDOC_CLASSES = YES +HIDE_FRIEND_COMPOUNDS = YES +HIDE_IN_BODY_DOCS = YES +INTERNAL_DOCS = NO +CASE_SENSE_NAMES = YES +HIDE_SCOPE_NAMES = YES +SHOW_INCLUDE_FILES = YES +INLINE_INFO = YES +SORT_MEMBER_DOCS = YES +SORT_BRIEF_DOCS = YES +SORT_GROUP_NAMES = YES +SORT_BY_SCOPE_NAME = NO +GENERATE_TODOLIST = NO +GENERATE_TESTLIST = YES +GENERATE_BUGLIST = YES +GENERATE_DEPRECATEDLIST= YES +ENABLED_SECTIONS = +MAX_INITIALIZER_LINES = 30 +SHOW_USED_FILES = YES +SHOW_DIRECTORIES = YES +SHOW_FILES = YES +SHOW_NAMESPACES = YES +FILE_VERSION_FILTER = +#--------------------------------------------------------------------------- +# configuration options related to warning and progress messages +#--------------------------------------------------------------------------- +QUIET = YES +WARNINGS = YES +WARN_IF_UNDOCUMENTED = YES +WARN_IF_DOC_ERROR = YES +WARN_NO_PARAMDOC = NO +WARN_FORMAT = "$file:$line: $text" +WARN_LOGFILE = +#--------------------------------------------------------------------------- +# configuration options related to the input files +#--------------------------------------------------------------------------- +INPUT = . +INPUT_ENCODING = UTF-8 +FILE_PATTERNS = *.cc \ + *.hh \ + *.hxx \ + *.hcc +RECURSIVE = YES +EXCLUDE = user +EXCLUDE_SYMLINKS = YES +EXCLUDE_PATTERNS = *spe.hh +EXCLUDE_SYMBOLS = *::internal* +EXAMPLE_PATH = /lrde/stockholm/lazzara/svn/olena/git/oln/milena/doc/tutorial/samples \ + /lrde/stockholm/lazzara/svn/olena/git/oln/milena/doc/tutorial/outputs \ + /lrde/stockholm/lazzara/svn/olena/git/oln/milena/doc/tutorial/examples \ + /lrde/stockholm/lazzara/svn/olena/git/oln/milena/doc/examples \ + /lrde/stockholm/lazzara/svn/olena/git/build/milena/doc/tutorial/samples \ + /lrde/stockholm/lazzara/svn/olena/git/build/milena/doc/tutorial/outputs +EXAMPLE_PATTERNS = +EXAMPLE_RECURSIVE = NO +IMAGE_PATH = /lrde/stockholm/lazzara/svn/olena/git/oln/milena/doc/tutorial/figures \ + /lrde/stockholm/lazzara/svn/olena/git/build/milena/doc/tutorial/figures \ + /lrde/stockholm/lazzara/svn/olena/git/oln/milena/img +INPUT_FILTER = +FILTER_PATTERNS = +FILTER_SOURCE_FILES = NO +#--------------------------------------------------------------------------- +# configuration options related to source browsing +#--------------------------------------------------------------------------- +SOURCE_BROWSER = YES +INLINE_SOURCES = NO +STRIP_CODE_COMMENTS = YES +REFERENCED_BY_RELATION = YES +REFERENCES_RELATION = YES +REFERENCES_LINK_SOURCE = YES +USE_HTAGS = NO +VERBATIM_HEADERS = YES +#--------------------------------------------------------------------------- +# configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- +ALPHABETICAL_INDEX = YES +COLS_IN_ALPHA_INDEX = 5 +IGNORE_PREFIX = +#--------------------------------------------------------------------------- +# configuration options related to the HTML output +#--------------------------------------------------------------------------- +GENERATE_HTML = YES +HTML_OUTPUT = html +HTML_FILE_EXTENSION = .html +HTML_HEADER = +HTML_FOOTER = +HTML_STYLESHEET = +HTML_ALIGN_MEMBERS = YES +GENERATE_HTMLHELP = NO +GENERATE_DOCSET = NO +DOCSET_FEEDNAME = "Doxygen generated docs" +DOCSET_BUNDLE_ID = org.doxygen.Project +HTML_DYNAMIC_SECTIONS = YES +CHM_FILE = +HHC_LOCATION = +GENERATE_CHI = NO +CHM_INDEX_ENCODING = +BINARY_TOC = NO +TOC_EXPAND = NO +DISABLE_INDEX = NO +ENUM_VALUES_PER_LINE = 4 +GENERATE_TREEVIEW = FRAME +TREEVIEW_WIDTH = 250 +FORMULA_FONTSIZE = 10 +#--------------------------------------------------------------------------- +# configuration options related to the LaTeX output +#--------------------------------------------------------------------------- +GENERATE_LATEX = NO +LATEX_OUTPUT = latex +LATEX_CMD_NAME = latex +MAKEINDEX_CMD_NAME = makeindex +COMPACT_LATEX = NO +PAPER_TYPE = a4wide +EXTRA_PACKAGES = +LATEX_HEADER = +PDF_HYPERLINKS = YES +USE_PDFLATEX = YES +LATEX_BATCHMODE = YES +LATEX_HIDE_INDICES = NO +#--------------------------------------------------------------------------- +# configuration options related to the RTF output +#--------------------------------------------------------------------------- +GENERATE_RTF = NO +RTF_OUTPUT = rtf +COMPACT_RTF = NO +RTF_HYPERLINKS = NO +RTF_STYLESHEET_FILE = +RTF_EXTENSIONS_FILE = +#--------------------------------------------------------------------------- +# configuration options related to the man page output +#--------------------------------------------------------------------------- +GENERATE_MAN = NO +MAN_OUTPUT = man +MAN_EXTENSION = .3 +MAN_LINKS = NO +#--------------------------------------------------------------------------- +# configuration options related to the XML output +#--------------------------------------------------------------------------- +GENERATE_XML = NO +XML_OUTPUT = xml +XML_SCHEMA = +XML_DTD = +XML_PROGRAMLISTING = YES +#--------------------------------------------------------------------------- +# configuration options for the AutoGen Definitions output +#--------------------------------------------------------------------------- +GENERATE_AUTOGEN_DEF = NO +#--------------------------------------------------------------------------- +# configuration options related to the Perl module output +#--------------------------------------------------------------------------- +GENERATE_PERLMOD = NO +PERLMOD_LATEX = NO +PERLMOD_PRETTY = YES +PERLMOD_MAKEVAR_PREFIX = +#--------------------------------------------------------------------------- +# Configuration options related to the preprocessor +#--------------------------------------------------------------------------- +ENABLE_PREPROCESSING = YES +MACRO_EXPANSION = YES +EXPAND_ONLY_PREDEF = YES +SEARCH_INCLUDES = YES +INCLUDE_PATH = +INCLUDE_FILE_PATTERNS = +PREDEFINED = "mlc_unqualif(T)=typename mln::metal::unqualif<T>::ret" \ + "mln_piter(T)=typename T::piter" \ + "mln_fwd_piter(T)=typename T::fwd_piter" \ + "mln_bkd_piter(T)=typename T::bkd_piter" \ + "mln_qiter(T)=typename T::qiter" \ + "mln_fwd_qiter(T)=typename T::fwd_qiter" \ + "mln_bkd_qiter(T)=typename T::bkd_qiter" \ + "mln_niter(T)=typename T::niter" \ + "mln_fwd_niter(T)=typename T::fwd_niter" \ + "mln_bkd_niter(T)=typename T::bkd_niter" \ + "mln_viter(T)=typename T::viter" \ + "mln_fwd_viter(T)=typename T::fwd_viter" \ + "mln_bkd_viter(T)=typename T::bkd_viter" \ + "mln_result(T)=typename T::result" \ + "mln_enc(T)=typename T::enc" \ + "mln_value(T)=typename T::value" \ + "mln_qlf_value(T)=typename T::qlf_value" \ + "mln_pset(T)=typename T::pset" \ + "mln_sum(T)=typename mln::value::props<T>::sum" \ + "mln_vset(T)=typename T::vset" \ + "mln_rvalue(T)=typename T::rvalue" \ + "mln_lvalue(T)=typename T::lvalue" \ + "mln_mesh(T)=typename T::mesh" \ + "mln_coord(T)=typename T::coord" \ + "mln_site(T)=typename T::site" \ + "mln_psite(T)=typename T::psite" \ + "mln_dpsite(T)=typename T::dpsite" \ + "mln_accu_with(A, T)=typename A::template with< T >::ret" \ + "mln_trait_op_plus(L, R)=typename mln::trait::op::plus< L , R >::ret" \ + "mln_trait_op_minus(L, R)=typename mln::trait::op::minus< L , R >::ret" \ + "mln_trait_op_times(L, R)=typename mln::trait::op::times< L , R >::ret" \ + "mln_trait_op_div(L, R)=typename mln::trait::op::div< L , R >::ret" \ + "mln_trait_op_mod(L, R)=typename mln::trait::op::mod< L , R >::ret" \ + "mln_trait_op_uminus(T)=typename mln::trait::op::uminus< T >::ret" \ + "mln_ch_value(I, V)=typename mln::trait::ch_value< I, V >::ret" \ + "mlc_unqualif_(T)=mln::metal::unqualif<T>::ret" \ + "mln_piter_(T)=T::piter" \ + "mln_fwd_piter_(T)=T::fwd_piter" \ + "mln_bkd_piter_(T)=T::bkd_piter" \ + "mln_qiter_(T)=T::qiter" \ + "mln_fwd_qiter_(T)=T::fwd_qiter" \ + "mln_bkd_qiter_(T)=T::bkd_qiter" \ + "mln_niter_(T)=T::niter" \ + "mln_fwd_niter_(T)=T::fwd_niter" \ + "mln_bkd_niter_(T)=T::bkd_niter" \ + "mln_viter_(T)=T::viter" \ + "mln_fwd_viter_(T)=T::fwd_viter" \ + "mln_bkd_viter_(T)=T::bkd_viter" \ + "mln_result_(T)=T::result" \ + "mln_enc_(T)=T::enc" \ + "mln_value_(T)=T::value" \ + "mln_qlf_value_(T)=T::qlf_value" \ + "mln_pset_(T)=T::pset" \ + "mln_sum_(T)=mln::value::props<T>::sum" \ + "mln_vset_(T)=T::vset" \ + "mln_rvalue_(T)=T::rvalue" \ + "mln_lvalue_(T)=T::lvalue" \ + "mln_mesh_(T)=T::mesh" \ + "mln_coord_(T)=T::coord" \ + "mln_site_(T)=T::site" \ + "mln_psite_(T)=T::psite" \ + "mln_dpsite_(T)=T::dpsite" \ + "mln_accu_with_(A, T)=A::template with< T >::ret" \ + "mln_trait_op_plus_(L, R)=mln::trait::op::plus< L , R >::ret" \ + "mln_trait_op_minus_(L, R)=mln::trait::op::minus< L , R >::ret" \ + "mln_trait_op_times_(L, R)=mln::trait::op::times< L , R >::ret" \ + "mln_trait_op_div_(L, R)=mln::trait::op::div< L , R >::ret" \ + "mln_trait_op_mod_(L, R)=mln::trait::op::mod< L , R >::ret" \ + "mln_trait_op_uminus_(T)=mln::trait::op::uminus< T >::ret" \ + "mln_ch_value_(I, V)=typename mln::trait::ch_value< I, V >::ret" \ + "mln_ch_value(I, V)_=mln::trait::ch_value< I, V >::ret" \ + "mln_morpher_lvalue(I)=typename internal::morpher_lvalue_<I>::ret" \ + "mln_concrete(I)=typename mln::trait::concrete< I >::ret" \ + "mln_concrete_ch_value(I, V)=typename mln::trait::ch_value< typename mln::trait::concrete< I >::ret, V >::ret" \ + "mlc_const(T)=typename mln::metal::const_< T >::ret" \ + "mlc_const_return(T)=typename mln::metal::const_return_< T >::ret" \ + "mln_element(T)=typename T::element" \ + "mln_element_(T)=T::element" \ + "mln_delta(T)=typename T::delta" \ + "mln_delta_(T)=T::delta" \ + "mln_dpoint(T)=typename T::dpoint" \ + "mln_dpoint_(T)=T::dpoint" \ + "mln_point(T)=typename T::point" \ + "mln_point_(T)=T::point" \ + "mln_gradient_component(I)=typename mln::trait::ch_value< I, mln::value::props< typename I::value >::sum >::ret" \ + "mln_gradient(I)=mln::value::stack_image< I::point::dim, mln::trait::ch_value< I, mln::value::props< typename I::value >::sum >::ret >" +EXPAND_AS_DEFINED = +SKIP_FUNCTION_MACROS = YES +#--------------------------------------------------------------------------- +# Configuration::additions related to external references +#--------------------------------------------------------------------------- +TAGFILES = +GENERATE_TAGFILE = +ALLEXTERNALS = NO +EXTERNAL_GROUPS = YES +PERL_PATH = /usr/bin/perl +#--------------------------------------------------------------------------- +# Configuration options related to the dot tool +#--------------------------------------------------------------------------- +CLASS_DIAGRAMS = YES +MSCGEN_PATH = +HIDE_UNDOC_RELATIONS = YES +HAVE_DOT = YES +DOT_FONTNAME = FreeSans +DOT_FONTPATH = +CLASS_GRAPH = YES +COLLABORATION_GRAPH = YES +GROUP_GRAPHS = YES +UML_LOOK = NO +TEMPLATE_RELATIONS = YES +INCLUDE_GRAPH = YES +INCLUDED_BY_GRAPH = YES +CALL_GRAPH = NO +CALLER_GRAPH = NO +GRAPHICAL_HIERARCHY = YES +DIRECTORY_GRAPH = YES +DOT_IMAGE_FORMAT = png +DOT_PATH = +DOTFILE_DIRS = +DOT_GRAPH_MAX_NODES = 50 +MAX_DOT_GRAPH_DEPTH = 1000 +DOT_TRANSPARENT = NO +DOT_MULTI_TARGETS = NO +GENERATE_LEGEND = YES +DOT_CLEANUP = YES +#--------------------------------------------------------------------------- +# Configuration::additions related to the search engine +#--------------------------------------------------------------------------- +SEARCHENGINE = NO diff --git a/milena/doc/tutorial/figures/extend-1.ppm b/milena/doc/tutorial/figures/extend-1.ppm new file mode 100644 index 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literal 0 HcmV?d00001 diff --git a/milena/doc/tutorial/outputs/extend.txt b/milena/doc/tutorial/outputs/extend.txt new file mode 100644 index 0000000..e69de29 diff --git a/milena/doc/tutorial/samples/Makefile.am b/milena/doc/tutorial/samples/Makefile.am index f4c4877..899f8a8 100644 --- a/milena/doc/tutorial/samples/Makefile.am +++ b/milena/doc/tutorial/samples/Makefile.am @@ -9,6 +9,7 @@ noinst_PROGRAMS = \ domain-display \ dpoint-1 \ estim-sites \ + extend \ extension-ignore \ fill \ fill-call-1 \ @@ -55,6 +56,7 @@ box2d_bbox_SOURCES = box2d-bbox.cc domain_display_SOURCES = domain-display.cc dpoint_1_SOURCES = dpoint-1.cc estim_sites_SOURCES = estim-sites.cc +extend_SOURCES = extend.cc extension_ignore_SOURCES = extension-ignore.cc fill_SOURCES = fill.cc fill_call_1_SOURCES = fill-call-1.cc diff --git a/milena/doc/tutorial/samples/extend.cc b/milena/doc/tutorial/samples/extend.cc new file mode 100644 index 0000000..2f9ae0d --- /dev/null +++ b/milena/doc/tutorial/samples/extend.cc @@ -0,0 +1,94 @@ +#include <mln/essential/2d.hh> +#include <mln/fun/p2b/big_chess.hh> +#include <tests/data.hh> +#include <doc/tutorial/tools/sample_utils.hh> + +namespace mln +{ + + struct saturate_rgb8 : public Function_v2v<saturate_rgb8> + { + + typedef value::rgb8 result; + + value::rgb8 operator()(const value::rgb8& v) const + { + value::rgb8 v2 = v; + v2.red() > 50 ? v2.red() -= 50 : v2.red() = 0; + v2.green() > 50 ? v2.green() -= 50 : v2.green() = 0; + v2.blue() > 50 ? v2.blue() -= 50 : v2.blue() = 0; + return v2; + } + + }; + +} // end of namespace mln + +// \{ +namespace mln +{ + + struct my_ext : public Function_p2v<my_ext> + { + + typedef value::rgb8 result; + + value::rgb8 operator()(const point2d& p) const + { + if ((p.row() + p.col()) % 20) + return literal::black; + return literal::white; + } + + }; + +} // end of namespace mln +// \} + +int main() +{ + using namespace mln; + using value::rgb8; + + border::thickness = 5; + + // \{ + image2d<rgb8> lena; + io::ppm::load(lena, MLN_IMG_DIR "/small.ppm"); + box2d bbox_enlarged = lena.domain(); + bbox_enlarged.enlarge(border::thickness); + mln_VAR(ima_roi, lena | fun::p2b::big_chess<box2d>(lena.domain(), 10)); + // \} + + image2d<rgb8> tmp; + initialize(tmp, lena); + data::fill(tmp, literal::black); + data::paste(ima_roi, tmp); + doc::ppmsave(tmp, "extend"); + + // \{ + mln_VAR(ext_with_val, extended_to(extend(ima_roi, literal::blue), bbox_enlarged)); + // \} + doc::ppmsave(ext_with_val, "extend"); + + // \{ + mln_VAR(ext_with_fun, extended_to(extend(ima_roi, my_ext()), bbox_enlarged)); + // \} + doc::ppmsave(ext_with_fun, "extend"); + + + // \{ + mln_VAR(ext_with_ima, extend(ima_roi, lena)); + // \} + doc::ppmsave(ext_with_ima, "extend"); + + image2d<bool> mask; + initialize(mask, lena); + data::fill(mask, true); + data::fill((mask | ima_roi.domain()).rw(), false); + mln_VAR(ima_ext, level::transform(lena | (pw::value(mask) != false), saturate_rgb8())); + data::paste(ima_ext, lena); + data::paste(ima_roi, lena); + doc::ppmsave(lena, "extend"); + +} diff --git a/milena/doc/tutorial/samples/ima2d-rot.cc b/milena/doc/tutorial/samples/ima2d-rot.cc index 6463a5c..05e12ad 100644 --- a/milena/doc/tutorial/samples/ima2d-rot.cc +++ b/milena/doc/tutorial/samples/ima2d-rot.cc @@ -41,7 +41,7 @@ int main() } draw::box(ima2, ima2.bbox(), literal::red); - doc::ppmsave(ima2 | extended_domain, IMA2_PPM); + doc::ppmsave(extended_to(ima2, extended_domain), IMA2_PPM); // \} } diff --git a/milena/doc/tutorial/tools/todoxygen.sh b/milena/doc/tutorial/tools/todoxygen.sh index 0d2aae5..fa5d188 100755 --- a/milena/doc/tutorial/tools/todoxygen.sh +++ b/milena/doc/tutorial/tools/todoxygen.sh @@ -30,7 +30,7 @@ sed -i -e 's/≡/\&equiv/g' $out #Doxygen wants us to preserve '\n' after commands. #\ref and \see do not need that extra new line. -for keyword in include section page subpage subsection image; do +for keyword in include section page subpage subsection subsubsection image; do sed -i -e "s/\\\\endhtmlonly\\\\$keyword/\\\\endhtmlonly\n\n\\\\$keyword/g" $out sed -i -e "s/\\\\$keyword \(.*\)\\\\htmlonly/\\\\$keyword \1\n\n\\\\htmlonly\n/g" $out done diff --git a/milena/doc/tutorial/tutorial.tex b/milena/doc/tutorial/tutorial.tex index 267d0e2..7a4de1b 100644 --- a/milena/doc/tutorial/tutorial.tex +++ b/milena/doc/tutorial/tutorial.tex @@ -73,6 +73,13 @@ \backslash htmlonly % } +\newcommand{\doxysubsubsection}[2]{% +\label{#1} +\backslash endhtmlonly% +\backslash subsubsection #1 #2% +\backslash htmlonly % +} + % #1 - part number (Optional) % #2 - file name \newcommand{\doxycode}[2][1]{ @@ -150,6 +157,7 @@ $$ \renewcommand{\doxychapter}[2]{\chapter{#2}\label{#1}} \renewcommand{\doxysection}[2]{\section{#2}\label{#1}} \renewcommand{\doxysubsection}[2]{\subsection{#2}\label{#1}} +\renewcommand{\doxysubsubsection}[2]{\subsubsection{#2}\label{#1}} \renewcommand{\doxycode}[2][1]{\lstinputlisting[frame=single]{samples/#2-#1.cc}} \renewcommand{\doxyrawcode}[1]{\lstinputlisting[frame=single]{samples/#1.cc.raw}} \renewcommand{\doxyoutput}[1]{\lstinputlisting[frame=single]{outputs/#1.txt}} @@ -564,7 +572,8 @@ restricted to the region of interest \var{roi}'. Actually this is not directly Note the use of \code{rw()} which is mandatory due to C++ limitations. In C++, the image created by \code{lena | roi} is \code{const}, e.g. read-only, though -\code{data::fill} expect a \code{non-const} image, e.g. read-write. +\code{data::fill} expect a \code{non-const} image, e.g. read-write. \code{rw()} +is a workaround to make it read-write. \begin{center} \begin{tabular}{c c c} @@ -1214,6 +1223,8 @@ image domain. In the library, both the concept of border and of extension can be These concepts are useful in many algorithms and can avoid costly tests while working with sites located on image edges. +\doxysubsection{imabordersection}{Image border} + A border is a finite extension provided to a basic image type, such as \type{image2d}. By default, every image is created with a border. The default width is defined through the global variable \var{border::thickness} defined in @@ -1234,8 +1245,6 @@ ignored while saving or printing an image. Some operations can be performed on the border. The functions are located in \hpath{mln/border}.\\ -FIXME: More details about border manipulation! border:get(), \ldots - % \bigskip % @@ -1254,7 +1263,9 @@ resize & Set image border to a specific size.\\ \end{tabular} \\ -On morphed images, decribed in section \doxyref{imamorphed}, the border concept +\doxysubsection{imextgeneral}{Generality on image extension} + +On morphed images, described in section \doxyref{imamorphed}, the border concept does not exist and is generalized to the extension concept. A simple example of a morphed image is a sub-image. A sub image does not have border nor extension by default. @@ -1264,8 +1275,6 @@ Another point is that an image can be used as extension. For instance, in the case of a sub-image, you may be interested in extending the sub-image with the image itself. -[FIXME: schema - voir cahier] - The extension supports the following operations. These functions are located in \hpath{mln/extension}.\\ @@ -1275,9 +1284,65 @@ The extension supports the following operations. These functions are located in \begin{tabular}{l|p{10cm}} Routine & Description \\ \hline +adjust & Adjust the extension given a structural element.\\ +adjust\_duplicate & Adjust the size of the extension given a structural element and duplicate the image inner boundary.\\ +adjust\_fill & Adjust the size of the extension given a structural element and fill it with a value.\\ +duplicate & Duplicate the values of the image inner boundary in the extension.\\ fill & Fill the extension with a given value.\\ \end{tabular} \\ + +In order to extend an image, a routine \code{extend} is available in +\hpath{mln/core/routine/extend.hh}. The routine \code{extended\_to} may +also help during debug. It allows to extend the image domain to a larger +one. The values associated to the new sites comes from the extension. + +\doxysubsection{extexample}{Different extensions} + +Let's say we have want to extract a sub domain from an image. In the following +example, \var{ima\_roi} holds several small rectangles from the original image. +\doxycode[2]{extend} + +\begin{center} + \begin{tabular}{c c c} + \doxyimg{small-enlarged} & ~\huge{\rightarrow}~ & \doxyfigure[1]{extend}{3cm} \\ + \var{lena} & & \var{ima\_roi} (black color means the sites are not included in the domain) \\ + \end{tabular} +\end{center} + + +Then, we may extend this sub image with one of the three following extension type. + +\doxysubsubsection{extval}{Extension with a value} + +Let's extend with the value \code{literal::blue}. +\doxycode[3]{extend} +\doxyfigure[2]{extend}{3cm} + +Note the use of the \code{extended\_to()} routine. We used a larger bbox to +extend the image domain. That is the reason why the image is surrounded by the +extension value, blue. + +\doxysubsubsection{extfun}{Extension with a function} + +Let's use the following function: +\doxycode[1]{extend} +\doxycode[4]{extend} +\doxyfigure[3]{extend}{3cm} + +\doxysubsubsection{extima}{Extension with an image} + +Let's extend with the original image, \var{lena}. +\doxycode[5]{extend} + +\begin{center} + \begin{tabular}{c c} + \doxyfigure[4]{extend}{3cm} & \doxyfigure[5]{extend}{3cm} \\ + \var{ext\_with\_ima}, the extended image. & The actual data in the domain (light) with its extension (dark) \\ + \end{tabular} +\end{center} + + %---------------- \subsection*{IMPORTANT NOTE} Many times, you may want to check if a site is part of the image before applying @@ -1559,7 +1624,8 @@ cuboid3d & Cuboid & - \\ These predefined windows can be passed directly to a function. The headers are located in \header{mln/core/alias/window*.hh}. - +\doxysubsection{wwindow}{Weighted window} +FIXME \doxysubsection{neighborhood}{Neighborhood} -- 1.5.6.5