olena: branch mesh-segm-skel updated: olena-2.0-776-g0774f86

30 Aug 2013

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the project "Olena, a generic and efficient image processing platform".

The branch mesh-segm-skel has been updated
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- Log -----------------------------------------------------------------
0774f86 Prevent Emacs from using tabs in C++ files.
346ed70 configure.ac: Untabify.
a40ac76 Simplify even more Scribo Makefiles thanks to AM_DEFAULT_SOURCE_EXT.
f8090ed Simplify even more Milena Makefiles thanks to AM_DEFAULT_SOURCE_EXT.
32fe23a Regen images of the Milena documentation.
917fa3d Make remaining Milena copyright headers uniform.
7c470ab Disable tests/value/int_u32 in Milena.
2cbfa7d Fix 3D simple point generators in Milena tools.
e20e410 Kill warnings about unused variables.
c01c174 Fix inclusion paths in Swilena.
314a240 Fix inclusion paths in Scribo.
bdade6e Kill warnings about signed vs unsigned values.
1cbfcbe Catch up with the current interface of breadth_first_thinning.
d05185f Catch up with the current interface of mln::image3d.
8caa6a0 Replace meyer_wst with watershed::flooding.
5028921 Convert remaining Milena code to mln_trace.
5d8a125 Fix the use of Pi in Milena's apps/mesh-segm-skel.
e9bf0a6 Fix header inclusions in Milena's apps/mesh-segm-skel.
b77aca0 Add tests to generate figures for the WADGMM 2010/LNCS submission.
fe72edd Introduce a no-constraint functor to replace fun::p2b::tautology.
91582ec Factor code of 2D skeletonizations in apps/generic-skel/.
fea1bdb Misc changes in apps/generic-skel/ and tools/.
d06e84f Exercise breadth-first thinning with predicate is_not_1d_isthmus.
66dc444 Add a non 1D isthmus predicate for (2D and 3D) binary images.
4b84c24 Check the consistency of tools/simple_point3d_lut_26_6.hh.
5d26c00 Fix and improve the (fast) computation of 2D connectivity numbers.
d3965a6 Add more tests.
dadfbf8 apps/generic-skel/image3d-skel.hh: Add `inline' qualifiers.
b8c5c64 Introduce a better VTK output routine in apps/generic-skel.
a974765 Add a VTK output routine in apps/generic-skel.
7044058 Use package metadata macros instead of hard-coded strings in I/Os.
c7b2885 No longer consider mln/version.hh.in as handled by autoheader.
8c2373f Remove buggy symbol definitions.
b815f9e Set connectivity number functions when building is_simple_point3d.
c54ade0 Fix, factor and improve the (exact) simple 3D point criterion.
e3d3128 Add routines to compute 3D connectivity numbers.
989f64c Improve the generation of simple 3D point look-up tables.
caafe27 tools: s/simple_point_3d/simple_point3d/.
fd81df4 New app: apps/generic-skel/image3d-skel-unconstrained.
2a45daf Isolate reusable code from image3d-skel-with-end-points.
adbe79b Add a 3D volume of the Stanford bunny.
9237025 New application computing a 3D skeleton preserving end points.
d31555a Regen Milena's Makefile helpers.
a746768 Add a first version of a simple 3D point predicate.
1692704 Generate a simple 3D points look-up table for the (26,6)-adjacency.
8c6f47a Parallel computation of simple 3D point look-up tables.
176f3fd Sequential computation of simple 3D points look-up tables.
5f10622 Improve mln::topo::is_simple_2d_t.
8a48d80 Reintroduce is_simple_2d and connectivity_number_2d into mln::topo.
8f6e587 Factor connectivity_numbers_3d and connectivity_numbers_3d_tbb.
dcb65af Add a parallel version of connectivity_numbers_3d using TBB.
26d28a5 Make tools/connectivity_numbers_3d thread-safe.
b40c467 Factor soon-to-be shared components of connectivity_numbers_3d.
0feab07 Add a tool to compute 3D connectivity numbers.
e3b70ab Have tools/compute_local_configurations compile.
0d75e39 Import the computation of (2D) connectivity numbers from sandbox.
cd1d4e9 Configure milena/apps/generic-skel/Makefile.
064910d New apps on generic skeletonization.
d56e10b apps/graph-morpho: Catch up with current mln::topo::is_n_face.
ac04251 Use priority-driven thinning in collapse-based thinnings apps.
c8994ac Simplify curvature-based thinnings using 2- and 1-collapses apps.
ae5b2f2 Miscellaneous changes in mesh-related operations.
aa7f3d1 New apps: max curvature-based thinnings using 2- and 1-collapses.
887a3fe Add VTK versions of some OFF meshes.
2ab706d New app: binary OFF to VTK mesh conversion.
050eff1 New app performing a 2-collapse on a mesh.
b97c12a Prevent a site from being introduced twice in thinning's queues.
6cb33ef Add routines to identify and detach (collapse) simple pairs.
2bc617f Add preliminary VTK input for binary images.
5f4400b Add VTK-format meshes.
e52aac0 Add a pre-allocation routine to mln::geom::complex_geometry.
8f71dbf Small corrections in apps/mesh-segm-skel.
ed99a96 Exercise topology-related routines.
e379936 New complex image alias: mln::bin_2complex_image2d.
de6c91c Revamp mln::topo::is_simple_cell.
8ea7835 Have is_facet take into account the values of a (complex) image.
d06dc79 Revamp topology-related routines.
e56dcf9 Make the interface of thinning algorithms uniform w.r.t. functors.
d95b8eb State a cell is not simple if it does not correspond to a facet.
c607b2b Use mln::data::paste to simplify mesh skeleton applications.
8da07c1 Update mesh skeleton applications.
f6c0e86 More generic breadth-first-thinning-based skeleton transformations.
b4795e3 Introduce a helper to build an mln::mutable_extension_ima.
0abd35d Introduce an extension-by-mutable-image morpher.
178d976 Get the `detach' argument of thinning algorithms by reference.
9b0c072 Get rid of intermediate psites in thinning algorithms.
468f309 Have topo::is_n_face take a psite type as class parameter.
2669755 Aesthetic changes in thinning algorithms.
095d4d8 Fix the processing order in topo::breadth_first_thinning.
306940e Split interface and implementation of topo::is_not_end_point.
aec0b06 Catch up with the renaming to detach_cell.
e0308f4 Rename topo::detach as topo::detach_cell.
df7ee00 Exercise breadth-first and priority-driven thinnings.
359105b New skeletonization algorithm: priority-driven thinning.
3f55de7 Add helpers to compute skeletons by thinning on regular 2D images.
9416794 Add tracing mechanism to breadth-first thinning.
9a84a00 Small fix in breadth-first thinning.
faeffbf Make the 5th argument of breadth_first_thinning truly optional.
848be92 Add more documentation on the detach procedure.
65e27d4 Regen Milena's Makefile helpers.
75d0147 Add a VTK output for images of unsigned integers.
5f6cc93 mln/io/vtk/save.hh: Fix documentation.
5da629f mln/io/vtk/all.hh: New.
641fb18 Add a specific (temporary) VTK output routine for binary mesh images.
10886bb configure.ac: Configure milena/tests/io/vtk/Makefile.
5c51ffe Exercise mln::io::vtk::save.
1af4682 Start a VTK output for complex-based images.
202bac2 mln/topo/skeleton/breadth_first_thinning.hh: Reindent.
e9c085e Fix two errors in mln::topo::skeleton::breadth_first_thinning.
959b10e Disable the last test case in test-mesh-complex-pinv-curv-skel.
958cb57 Configure tests in mesh-segm-skel apps.
4b83d9c mesh-complex-pinv-curv-segm and mesh-complex-pinv-curv-skel apps.
29bf3b0 Actually use the maximal curvature in mesh-complex-max-curv-segm.
7c649ab Improve the precision of some mesh-segm-skel apps.
9faa948 Configure milena/apps/mesh-segm-skel/test-mesh-complex-max-curv-skel.
279c337 New application: mesh-complex-max-curv-skel.
81f0006 Clean up and new FIXMES in in apps/mesh-segm-skel.
afa46ab Configure milena/apps/mesh-segm-skel/test-mesh-complex-max-curv-extrema.
955984a New application: mesh-complex-max-curv-extrema.
a412a54 Fix a bug in the reimplementation of Trimesh algorithms.
4ebb5d6 Improve topo::skeleton::breadth_first_thinning.
-----------------------------------------------------------------------

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 create mode 100644 scribo/scribo/filter/all.hh
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 create mode 100644 scribo/scribo/filter/images_in_paragraph.hh
 create mode 100644 scribo/scribo/filter/internal/alignment_angle.hh
 create mode 100644 scribo/scribo/filter/internal/component_aligned.hh
 create mode 100644 scribo/scribo/filter/internal/compute.hh
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 create mode 100644 scribo/scribo/filter/object_groups_small.hh
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 create mode 100644 scribo/scribo/filter/object_links_aligned.hh
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 create mode 100644 scribo/scribo/preprocessing/rotate_90.hh
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 rename scribo/{ => scribo}/primitive/all.hh (100%)
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 create mode 100644 scribo/scribo/primitive/group/all.hh
 create mode 100644 scribo/scribo/primitive/group/apply.hh
 create mode 100644 scribo/scribo/primitive/group/from_double_link.hh
 create mode 100644 scribo/scribo/primitive/group/from_double_link_any.hh
 create mode 100644 scribo/scribo/primitive/group/from_graph.hh
 create mode 100644 scribo/scribo/primitive/group/from_single_link.hh
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 create mode 100644 scribo/scribo/primitive/internal/all.hh
 create mode 100644 scribo/scribo/primitive/internal/find_graph_link.hh
 create mode 100644 scribo/scribo/primitive/internal/find_root.hh
 rename scribo/{ => scribo}/primitive/internal/have_link_valid.hh (100%)
 create mode 100644 scribo/scribo/primitive/internal/is_link_valid.hh
 create mode 100644 scribo/scribo/primitive/internal/rd.hh
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 create mode 100644 scribo/scribo/primitive/link/internal/find_link.hh
 create mode 100644 scribo/scribo/primitive/link/internal/find_several_links.hh
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 create mode 100644 scribo/scribo/primitive/link/merge_double_link.hh
 create mode 100644 scribo/scribo/primitive/link/merge_double_link_closest_aligned.hh
 create mode 100644 scribo/scribo/primitive/link/with_graph.hh
 create mode 100644 scribo/scribo/primitive/link/with_rag.hh
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 create mode 100644 scribo/scribo/primitive/link/with_several_left_links.hh
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 create mode 100644 scribo/scribo/primitive/link/with_single_down_link.hh
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 create mode 100644 scribo/scribo/primitive/merge/components.hh
 create mode 100644 scribo/scribo/primitive/regroup/from_single_left_link.hh
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 create mode 100644 scribo/scribo/primitive/remove/separators.hh
 create mode 100644 scribo/scribo/subsampling/bilinear.hh
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 create mode 100644 scribo/scribo/table/align_lines_horizontaly.hh
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 rename scribo/{ => scribo}/table/all.hh (100%)
 create mode 100644 scribo/scribo/table/connect_horizontal_lines.hh
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 rename scribo/{ => scribo}/table/internal/all.hh (100%)
 create mode 100644 scribo/scribo/table/internal/connect_lines.hh
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 rename scribo/{ => scribo}/text/all.hh (100%)
 create mode 100644 scribo/scribo/text/clean.hh
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 create mode 100644 scribo/scribo/text/extract_lines.hh
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Olena, a generic and efficient image processing platform

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