August 2013 - Olena-patches

olena: olena-2.0-633-g870ac7a Improve the test of the Fast Fourier Transform.
by Roland Levillain 26 Aug '13

26 Aug '13

* tests/transform/fft.cc: Ensure the inverse transform of the transform is pretty much the same as the input image. Save the cropped transform. Remove dead code. * tests/transform/Makefile.am (MOSTLYCLEANFILES): Add fft_trans_cropped.pgm. --- milena/ChangeLog | 11 +++++++++++ milena/tests/transform/Makefile.am | 1 + milena/tests/transform/fft.cc | 18 ++++++++++++++++-- 3 files changed, 28 insertions(+), 2 deletions(-) diff --git a/milena/ChangeLog b/milena/ChangeLog index eb7148d..9cfd3a6 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,5 +1,16 @@ 2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + Improve the test of the Fast Fourier Transform. + + * tests/transform/fft.cc: Ensure the inverse transform of the + transform is pretty much the same as the input image. + Save the cropped transform. + Remove dead code. + * tests/transform/Makefile.am (MOSTLYCLEANFILES): + Add fft_trans_cropped.pgm. + +2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + Update copyright headers. * mln/transform/fft.hh, diff --git a/milena/tests/transform/Makefile.am b/milena/tests/transform/Makefile.am index b266926..a49ae65 100644 --- a/milena/tests/transform/Makefile.am +++ b/milena/tests/transform/Makefile.am @@ -46,4 +46,5 @@ MOSTLYCLEANFILES = \ fft_copy.pgm \ fft_low_pass.pgm \ fft_trans_clipped.pgm \ + fft_trans_cropped.pgm \ fft_trans_log.pgm diff --git a/milena/tests/transform/fft.cc b/milena/tests/transform/fft.cc index c5c5bec..1dce9df 100644 --- a/milena/tests/transform/fft.cc +++ b/milena/tests/transform/fft.cc @@ -30,6 +30,12 @@ #include <mln/opt/at.hh> #include <mln/debug/println.hh> +#include <mln/core/image/flat_image.hh> +#include <mln/fun/vv2b/le.hh> +#include <mln/fun/vv2v/diff_abs.hh> +#include <mln/data/transform.hh> +#include <mln/test/predicate.hh> + #include "tests/data.hh" #define CHECK(Condition) \ @@ -61,11 +67,16 @@ int main () io::pgm::save(im3, "fft_copy.pgm"); image2d<int_u8> fft = fourier.transformed_image_log_magn<int_u8>(true); - // debug::println(fourier.transformed_image()); io::pgm::save(fft, "fft.pgm"); std::cout << "Test: Image == F-1(F(Image)) ... " << std::flush; - // CHECK (im1 == im3); + /* FIXME: Milena lacks some feature to make write the following in a + shorter fashion (fun-morpher accepting binary (vv2v) functions or + function composition in pw-functions. */ + CHECK(test::predicate(data::transform(im1, im3, + fun::vv2v::diff_abs<int_u8>()), + flat_image<int_u8, box2d>(1, im1.domain()), + fun::vv2b::le<int_u8>())); image2d<int_u8> out = fourier.transformed_image_clipped_magn<int_u8>(0.01); @@ -83,6 +94,9 @@ int main () for (int col = 40; col < im2.ncols() - 40; ++col) opt::at(im2, row, col) = 0; + fft = fourier.transformed_image_log_magn<int_u8>(true); + io::pgm::save(fft, "fft_trans_cropped.pgm"); + out = fourier.transform_inv<int_u8>(); io::pgm::save(out, "fft_low_pass.pgm"); -- 1.7.10.4

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olena: olena-2.0-632-g1e9b9bd Update copyright headers.
by Roland Levillain 26 Aug '13

26 Aug '13

* mln/transform/fft.hh, * tests/transform/fft.cc: Here. --- milena/ChangeLog | 8 ++++++++ milena/mln/transform/fft.hh | 28 +++++++++++++--------------- milena/tests/transform/fft.cc | 29 +++++++++++++---------------- 3 files changed, 34 insertions(+), 31 deletions(-) diff --git a/milena/ChangeLog b/milena/ChangeLog index 681452a..eb7148d 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,5 +1,13 @@ 2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + Update copyright headers. + + * mln/transform/fft.hh, + * tests/transform/fft.cc: + Here. + +2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + * headers.mk, tests/unit_test/unit-tests.mk: Regen. 2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> diff --git a/milena/mln/transform/fft.hh b/milena/mln/transform/fft.hh index cf0f1bb..a010e47 100644 --- a/milena/mln/transform/fft.hh +++ b/milena/mln/transform/fft.hh @@ -1,30 +1,28 @@ // Copyright (C) 2007, 2008, 2009, 2012 EPITA Research and Development // Laboratory // -// This file is part of the Milena Library. This library is free -// software; you can redistribute it and/or modify it under the terms -// of the GNU General Public License version 2 as published by the -// Free Software Foundation. +// This file is part of Olena. // -// This library is distributed in the hope that it will be useful, +// Olena is free software: you can redistribute it and/or modify it under +// the terms of the GNU General Public License as published by the Free +// Software Foundation, version 2 of the License. +// +// Olena is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // General Public License for more details. // // You should have received a copy of the GNU General Public License -// along with this library; see the file COPYING. If not, write to -// the Free Software Foundation, 51 Franklin Street, Fifth Floor, -// Boston, MA 02111-1307, USA. +// along with Olena. If not, see <http://www.gnu.org/licenses/>. // // As a special exception, you may use this file as part of a free -// software library without restriction. Specifically, if other files +// software project without restriction. Specifically, if other files // instantiate templates or use macros or inline functions from this -// file, or you compile this file and link it with other files to -// produce an executable, this file does not by itself cause the -// resulting executable to be covered by the GNU General Public -// License. This exception does not however invalidate any other -// reasons why the executable file might be covered by the GNU General -// Public License. +// file, or you compile this file and link it with other files to produce +// an executable, this file does not by itself cause the resulting +// executable to be covered by the GNU General Public License. This +// exception does not however invalidate any other reasons why the +// executable file might be covered by the GNU General Public License. #ifndef MLN_TRANSFORM_FFT_HH # define MLN_TRANSFORM_FFT_HH diff --git a/milena/tests/transform/fft.cc b/milena/tests/transform/fft.cc index bf7b8b9..c5c5bec 100644 --- a/milena/tests/transform/fft.cc +++ b/milena/tests/transform/fft.cc @@ -1,30 +1,27 @@ -// -*- c++ -*- // Copyright (C) 2004, 2012 EPITA Research and Development Laboratory // -// This file is part of the Milena Library. This library is free -// software; you can redistribute it and/or modify it under the terms -// of the GNU General Public License version 2 as published by the -// Free Software Foundation. +// This file is part of Olena. // -// This library is distributed in the hope that it will be useful, +// Olena is free software: you can redistribute it and/or modify it under +// the terms of the GNU General Public License as published by the Free +// Software Foundation, version 2 of the License. +// +// Olena is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // General Public License for more details. // // You should have received a copy of the GNU General Public License -// along with this library; see the file COPYING. If not, write to -// the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, -// Boston, MA 02110-1301, USA. +// along with Olena. If not, see <http://www.gnu.org/licenses/>. // // As a special exception, you may use this file as part of a free -// software library without restriction. Specifically, if other files +// software project without restriction. Specifically, if other files // instantiate templates or use macros or inline functions from this -// file, or you compile this file and link it with other files to -// produce an executable, this file does not by itself cause the -// resulting executable to be covered by the GNU General Public -// License. This exception does not however invalidate any other -// reasons why the executable file might be covered by the GNU General -// Public License. +// file, or you compile this file and link it with other files to produce +// an executable, this file does not by itself cause the resulting +// executable to be covered by the GNU General Public License. This +// exception does not however invalidate any other reasons why the +// executable file might be covered by the GNU General Public License. #include <mln/transform/fft.hh> #include <mln/value/int_u8.hh> -- 1.7.10.4

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olena: olena-2.0-631-g3f5d9e5 headers.mk, tests/unit_test/unit-tests.mk: Regen.
by Roland Levillain 26 Aug '13

26 Aug '13

--- milena/ChangeLog | 4 ++++ milena/headers.mk | 1 + milena/tests/unit_test/unit-tests.mk | 1 + 3 files changed, 6 insertions(+) diff --git a/milena/ChangeLog b/milena/ChangeLog index fc060d8..681452a 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,5 +1,9 @@ 2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + * headers.mk, tests/unit_test/unit-tests.mk: Regen. + +2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + Exercise the Fast Fourier Transform. * tests/transform/fft.cc: Fix the path to the input image. diff --git a/milena/headers.mk b/milena/headers.mk index 87f20e8..d90f044 100644 --- a/milena/headers.mk +++ b/milena/headers.mk @@ -1142,6 +1142,7 @@ mln/transform/distance_and_influence_zone_geodesic.hh \ mln/transform/distance_front.hh \ mln/transform/distance_geodesic.hh \ mln/transform/essential.hh \ +mln/transform/fft.hh \ mln/transform/hough.hh \ mln/transform/influence_zone_front.hh \ mln/transform/influence_zone_geodesic.hh \ diff --git a/milena/tests/unit_test/unit-tests.mk b/milena/tests/unit_test/unit-tests.mk index c79f929..d1c1355 100644 --- a/milena/tests/unit_test/unit-tests.mk +++ b/milena/tests/unit_test/unit-tests.mk @@ -1183,6 +1183,7 @@ mln_transform_distance_and_influence_zone_geodesic \ mln_transform_distance_front \ mln_transform_distance_geodesic \ mln_transform_essential \ +mln_transform_fft \ mln_transform_hough \ mln_transform_influence_zone_front \ mln_transform_influence_zone_geodesic \ -- 1.7.10.4

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olena: olena-2.0-630-g02720ff Exercise the Fast Fourier Transform.
by Roland Levillain 26 Aug '13

26 Aug '13

* tests/transform/fft.cc: Fix the path to the input image. * tests/transform/Makefile.am (check_PROGRAMS) [HAVE_FFTW3]: Add fft. (fft_SOURCES, fft_CPPFLAGS, fft_LDFLAGS) [HAVE_FFTW3]: New. (MOSTLYCLEANFILES): New. --- milena/ChangeLog | 10 ++++++++++ milena/tests/transform/Makefile.am | 22 ++++++++++++++++++++-- milena/tests/transform/fft.cc | 6 ++++-- 3 files changed, 34 insertions(+), 4 deletions(-) diff --git a/milena/ChangeLog b/milena/ChangeLog index 8bc21f5..fc060d8 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,5 +1,15 @@ 2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + Exercise the Fast Fourier Transform. + + * tests/transform/fft.cc: Fix the path to the input image. + * tests/transform/Makefile.am + (check_PROGRAMS) [HAVE_FFTW3]: Add fft. + (fft_SOURCES, fft_CPPFLAGS, fft_LDFLAGS) [HAVE_FFTW3]: New. + (MOSTLYCLEANFILES): New. + +2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + Fix the Fast Fourier Transform. * mln/transform/fft.hh diff --git a/milena/tests/transform/Makefile.am b/milena/tests/transform/Makefile.am index 40de7f1..b266926 100644 --- a/milena/tests/transform/Makefile.am +++ b/milena/tests/transform/Makefile.am @@ -1,5 +1,5 @@ -# Copyright (C) 2008, 2009, 2010 EPITA Research and Development -# Laboratory (LRDE) +# Copyright (C) 2008, 2009, 2010, 2012 EPITA Research and Development +# Laboratory (LRDE). # # This file is part of Olena. # @@ -28,4 +28,22 @@ check_PROGRAMS = \ influence_zone_geodesic_saturated + +if HAVE_FFTW3 + +check_PROGRAMS += fft +fft_SOURCES = fft.cc +fft_CPPFLAGS = $(AM_CPPFLAGS) $(FFTW3_CPPFLAGS) +fft_LDFLAGS = $(AM_LDFLAGS) $(FFTW3_LDFLAGS) + +endif HAVE_FFTW3 + + TESTS = $(check_PROGRAMS) + +MOSTLYCLEANFILES = \ + fft.pgm \ + fft_copy.pgm \ + fft_low_pass.pgm \ + fft_trans_clipped.pgm \ + fft_trans_log.pgm diff --git a/milena/tests/transform/fft.cc b/milena/tests/transform/fft.cc index d7f7e63..bf7b8b9 100644 --- a/milena/tests/transform/fft.cc +++ b/milena/tests/transform/fft.cc @@ -1,5 +1,5 @@ // -*- c++ -*- -// Copyright (C) 2004 EPITA Research and Development Laboratory +// Copyright (C) 2004, 2012 EPITA Research and Development Laboratory // // This file is part of the Milena Library. This library is free // software; you can redistribute it and/or modify it under the terms @@ -33,6 +33,8 @@ #include <mln/opt/at.hh> #include <mln/debug/println.hh> +#include "tests/data.hh" + #define CHECK(Condition) \ if (Condition) \ std::cout << "OK" << std::endl; \ @@ -51,7 +53,7 @@ int main () int status = 0; image2d<int_u8> im1; - io::pgm::load(im1, "lena.pgm"); + io::pgm::load(im1, MLN_IMG_DIR "/lena.pgm"); fft<double> fourier(im1); -- 1.7.10.4

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olena: olena-2.0-629-gbee3fa8 Fix the Fast Fourier Transform.
by Roland Levillain 26 Aug '13

26 Aug '13

* mln/transform/fft.hh (mln::transform::fft<T, internal::fft_real>::fft): Properly initialize the plan of the inverse transform using fftw_plan_dft_c2r_2d. (mln::transform::fft<T, internal::fft_real>::transform_inv): Use the entire complex values (not just their real parts) to compute the inverse transform. (mln::transform::class fft<T, internal::fft_cplx>::fft): Call the proper function (fftw_plan_dft_2d) to create the plan of the inverse transform. Switch the input and the output so that the inverse transform uses the right images. --- milena/ChangeLog | 17 +++++++++++++++++ milena/mln/transform/fft.hh | 15 ++++++++------- 2 files changed, 25 insertions(+), 7 deletions(-) diff --git a/milena/ChangeLog b/milena/ChangeLog index 83a2c76..8bc21f5 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,3 +1,20 @@ +2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + + Fix the Fast Fourier Transform. + + * mln/transform/fft.hh + (mln::transform::fft<T, internal::fft_real>::fft): + Properly initialize the plan of the inverse transform using + fftw_plan_dft_c2r_2d. + (mln::transform::fft<T, internal::fft_real>::transform_inv): + Use the entire complex values (not just their real parts) to + compute the inverse transform. + (mln::transform::class fft<T, internal::fft_cplx>::fft): + Call the proper function (fftw_plan_dft_2d) to create the plan of + the inverse transform. + Switch the input and the output so that the inverse transform uses + the right images. + 2012-10-09 Alexandre Abraham <abraham(a)lrde.epita.fr> Import the FFTW-based Fast Fourier Transform. diff --git a/milena/mln/transform/fft.hh b/milena/mln/transform/fft.hh index 0dafa7b..cf0f1bb 100644 --- a/milena/mln/transform/fft.hh +++ b/milena/mln/transform/fft.hh @@ -1,4 +1,5 @@ -// Copyright (C) 2007, 2008, 2009 EPITA Research and Development Laboratory +// Copyright (C) 2007, 2008, 2009, 2012 EPITA Research and Development +// Laboratory // // This file is part of the Milena Library. This library is free // software; you can redistribute it and/or modify it under the terms @@ -418,8 +419,8 @@ namespace mln { this->p = fftw_plan_dft_r2c_2d (original_im.nrows(), original_im.ncols(), this->in, reinterpret_cast<fftw_complex*>(this->out), FFTW_ESTIMATE); - this->p_inv = fftw_plan_dft_r2c_2d (original_im.nrows(), original_im.ncols(), - this->in, reinterpret_cast<fftw_complex*>(this->out), FFTW_ESTIMATE); + this->p_inv = fftw_plan_dft_c2r_2d (original_im.nrows(), original_im.ncols(), + reinterpret_cast<fftw_complex*>(this->out), this->in, FFTW_ESTIMATE); this->trans_im = image2d< std::complex<T> >(original_im.domain()); } @@ -460,7 +461,7 @@ namespace mln { for (unsigned row = 0; row < this->trans_im.nrows(); ++row) for (unsigned col = 0; col <= this->trans_im.ncols() / 2; ++col) this->out[row * (this->trans_im.ncols() / 2 + 1) + col] = - opt::at(this->trans_im, row, col).real(); + opt::at(this->trans_im, row, col); fftw_execute(this->p_inv); @@ -620,9 +621,9 @@ namespace mln { this->p = fftw_plan_dft_2d(original_im.nrows(), original_im.ncols(), this->in, this->out, FFTW_FORWARD, FFTW_ESTIMATE); - this->p_inv = fftw2d_plan_dft_2d(original_im.nrows(), original_im.ncols(), - this->in, this->out, - FFTW_BACKWARD, FFTW_ESTIMATE); + this->p_inv = fftw_plan_dft_2d(original_im.nrows(), original_im.ncols(), + this->out, this->in, + FFTW_BACKWARD, FFTW_ESTIMATE); this->trans_im = image2d< std::complex<T> >(original_im.domain()); } -- 1.7.10.4

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olena: olena-2.0-628-g31f1d70 Ask configure to try to find FFTW (version 3).
by Roland Levillain 26 Aug '13

26 Aug '13

* configure.ac: Here. --- ChangeLog | 6 ++++++ configure.ac | 6 ++++++ 2 files changed, 12 insertions(+) diff --git a/ChangeLog b/ChangeLog index affb146..dd4134d 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,9 @@ +2012-10-09 Roland Levillain <roland(a)lrde.epita.fr> + + Ask configure to try to find FFTW (version 3). + + * configure.ac: Here. + 2013-08-22 Roland Levillain <roland(a)lrde.epita.fr> * AUTHORS: Update. diff --git a/configure.ac b/configure.ac index c8a46c8..095e81a 100644 --- a/configure.ac +++ b/configure.ac @@ -315,6 +315,12 @@ OLN_WITH_LIB([GDCM], [gdcm-2.0/gdcmReader.h], [gdcmCommon], [gdcm], [ -lgdcmexpat -lgdcmjpeg12 -lgdcmjpeg16 -lgdcmjpeg8], [ -lgdcmopenjpeg -lgdcmuuid -lgdcmzlib])) +# --------------- # +# FFTW3 library. # +# --------------- # + +OLN_WITH_LIB([FFTW3], [fftw3.h], [fftw3], [fftw3], [FFTW3], [-lm]) + ## --------- ## ## Swilena. ## -- 1.7.10.4

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olena: olena-2.0-627-g5f1d602 Import the FFTW-based Fast Fourier Transform.
by Alexandre Abraham 26 Aug '13

26 Aug '13

* mln/transform/fft.hh, * tests/transform/fft.cc: New. Imported from the old directory sanbox/abraham/. Signed-off-by: Roland Levillain <roland(a)lrde.epita.fr> --- milena/ChangeLog | 9 + milena/mln/transform/fft.hh | 693 +++++++++++++++++++++++++++++++++++++++++ milena/tests/transform/fft.cc | 92 ++++++ 3 files changed, 794 insertions(+) create mode 100644 milena/mln/transform/fft.hh create mode 100644 milena/tests/transform/fft.cc diff --git a/milena/ChangeLog b/milena/ChangeLog index 2e0ed94..83a2c76 100644 --- a/milena/ChangeLog +++ b/milena/ChangeLog @@ -1,3 +1,12 @@ +2012-10-09 Alexandre Abraham <abraham(a)lrde.epita.fr> + + Import the FFTW-based Fast Fourier Transform. + + * mln/transform/fft.hh, + * tests/transform/fft.cc: + New. + Imported from the old directory sanbox/abraham/. + 2013-08-23 Roland Levillain <roland(a)lrde.epita.fr> Fix a couple of Milena tests. diff --git a/milena/mln/transform/fft.hh b/milena/mln/transform/fft.hh new file mode 100644 index 0000000..0dafa7b --- /dev/null +++ b/milena/mln/transform/fft.hh @@ -0,0 +1,693 @@ +// Copyright (C) 2007, 2008, 2009 EPITA Research and Development Laboratory +// +// This file is part of the Milena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_TRANSFORM_FFT_HH +# define MLN_TRANSFORM_FFT_HH + +# include <mln/core/image/image2d.hh> +# include <mln/estim/min_max.hh> +# include <mln/opt/at.hh> + +# include <complex> + +# include <fftw3.h> + +namespace mln { + + namespace internal { + + /// Dispatch traits for fftw + enum fft_dispatch { fft_cplx, fft_real }; + + template <typename T> + struct fft_trait; + + /*! + ** \brief fft trait. + */ + template <> + struct fft_trait<double> + { + static const fft_dispatch which = fft_real; ///< Real dispatch. + typedef double fftw_input; ///< Type of input. + }; + + /*! + ** \brief fft trait. + ** + ** \specialization for ntg::cplx<R, T> + */ + template <typename T> + struct fft_trait< std::complex<T> > + { + static const fft_dispatch which = fft_cplx; ///< Complex dispatch. + typedef std::complex <T> fftw_input; ///< Type of input. + }; + + /*! + ** _fft<ntg::cplx_representation, T> + ** + ** \param T Data type. + */ + template <class T> + class _fft + { + public: + /*! + ** \brief Accessor to transformed image. + ** + ** Const version. + */ + const image2d< std::complex<T> > transformed_image() const + { + return trans_im; + } + + /*! + ** \brief Accessor to transformed image. + ** + ** Non const version. + */ + image2d< std::complex<T> >& transformed_image() + { + return trans_im; + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** |T[p]|. + ** + ** \tparam R Data type of the resulting image. + ** + ** \param ordered Kind of traversal. + */ + template <class R> + image2d<R> transformed_image_magn(bool ordered = true) const + { + // FIXME : check that R is real + + image2d<R> new_im(trans_im.domain()); + + if (ordered) + for (unsigned row = 0; row < new_im.nrows(); ++row) + for (unsigned col = 0; col < new_im.ncols(); ++col) + opt::at(new_im, row, col) = + std::norm(opt::at(trans_im, (row + trans_im.nrows() / 2) % trans_im.nrows(), + (col + trans_im.ncols() / 2) % trans_im.ncols())); + else + { + mln_piter(image2d< std::complex<T> >) it(trans_im.domain()); + + for_all(it) + new_im(it) = std::norm(trans_im(it)); + } + + return new_im; + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** |T[p]|. + ** + ** \param ordered Kind of traversal. + */ + image2d<T> transformed_image_magn(bool ordered = true) const + { + return transformed_image_magn<T>(ordered); + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a clipped value of |T[p]|.\n + ** + ** \param R Data type of the resulting image. + ** + ** \param clip Value used for clipping. + ** \param ordered Kind of traversal. + */ + + template <class R> + image2d<R> transformed_image_clipped_magn(const double clip, + bool ordered = true) const + { + // Check that R is real + + image2d<R> new_im(trans_im.domain()); + // check that clip is >=0 and <=1 ? + double max; + mln_piter(image2d<T>) it(trans_im.domain()); + + for_all(it) + if (std::norm(trans_im(it)) > max) + max = std::norm(trans_im(it)); + + if (ordered) + for (unsigned row = 0; row < new_im.nrows(); ++row) + for (unsigned col = 0; col < new_im.ncols(); ++col) + { + if (std::norm(opt::at(trans_im, (row + trans_im.nrows() / 2) % trans_im.nrows(), + (col + trans_im.ncols() / 2) % + trans_im.ncols())) >= max * clip) + opt::at(new_im, row, col) = mln_max(R); + else + opt::at(new_im, row, col) = + (double) mln_max(R) * + std::norm(opt::at(trans_im, (row + trans_im.nrows() / 2) % trans_im.nrows(), + (col + trans_im.ncols() / 2) % + trans_im.ncols())) / (max * clip); + } + else + { + for_all(it) + { + if (std::norm(trans_im(it)) >= max * clip) + new_im(it) = mln_max(R); + else + new_im(it) = (double) mln_max(R) * + std::norm(trans_im(it)) / (max * clip); + } + } + + return new_im; + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a clipped value of |T[p]|.\n + ** + ** \param clip Value used for clipping. + ** \param ordered Kind of traversal. + */ + image2d<T> transformed_image_clipped_magn(const double clip, + bool ordered = true) const + { + return transformed_image_clipped_magn<T>(clip, ordered); + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a clipped value of |T[p]|.\n + ** + ** \param R Data type of the resulting image. + ** + ** \param ordered Kind of traversal. + */ + + image2d<T> transformed_image_clipped_magn(bool ordered = true) const + { + return transformed_image_clipped_magn<T>(1, ordered); + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a clipped value of |T[p]|.\n + ** + ** \param R Data type of the resulting image. + ** + ** \param ordered Kind of traversal. + */ + + template <class R> + image2d<R> transformed_image_clipped_magn(bool ordered = true) const + { + return transformed_image_clipped_magn<R>(1, ordered); + } + + // FIXME: Find a more elegant way to fix range interval on a and b. + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a log translated value of |T[p]| on interval [a; b].\n + ** + ** \param a Lower bound. + ** \param b Upper bound. + ** \param ordered Kind of traversal. + */ + + template <class R> + image2d<R> transformed_image_log_magn(double a, + double b, + bool ordered = true) const + { + // Check that R is real + // 0 <= a <= 1000 + // 0 <= b <= 1000 + + image2d<R> new_im(trans_im.domain()); + + double max = 0; + mln_piter(image2d<R>) it(trans_im.domain()); + + for_all(it) + if (std::norm(trans_im(it)) > max) + max = std::norm(trans_im(it)); + + + if (ordered) + for (unsigned row = 0; row < new_im.nrows(); ++row) + for (unsigned col = 0; col < new_im.ncols(); ++col) + opt::at(new_im, row, col) = + log(a + b * std::norm(opt::at(trans_im, (row + trans_im.nrows() / 2) % trans_im.nrows(), + (col + trans_im.ncols() / 2) % trans_im.ncols()))) / + log (a + b * max) * mln_max(R); + else + { + mln_piter(image2d< std::complex<T> >) it(trans_im.domain()); + + for_all(it) + new_im(it) = log(a + b * std::norm(trans_im(it))) / + log (a + b * max) * mln_max(R); + } + + return new_im; + } + + // FIXME: Find a more elegant way to fix boundaries of a and b. + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a log translated value of |T[p]| on interval [a; b].\n + ** + ** \param a Lower bound. + ** \param b Upper bound. + ** \param ordered Kind of traversal. + */ + + image2d<T> transformed_image_log_magn(double a, + double b, + bool ordered = true) const + { + return transformed_image_log_magn<T>(a, b, ordered); + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a log translated value of |T[p]| on interval [1; 100].\n + ** + ** \param R Data type of the resulting image. + ** + ** \param ordered Kind of traversal. + */ + + template <class R> + image2d<R> transformed_image_log_magn(bool ordered = true) const + { + return transformed_image_log_magn<R>(1, 100, ordered); + } + + /*! + ** \brief Accessor to transformed image. + ** + ** For each point p of the transformed image T, you get + ** a log translated value of |T[p]| on interval [1; 100].\n + ** + ** \param ordered Kind of traversal. + */ + + image2d<T> transformed_image_log_magn(bool ordered = true) const + { + return transformed_image_log_magn<T>(1, 100, ordered); + } + + + /*! + ** \brief Destructor. + ** + ** Let memory free for other big images !!! + */ + ~_fft() + { + fftw_free(in); + fftw_free(out); + fftw_destroy_plan(p); + fftw_destroy_plan(p_inv); + } + + protected: + + typename fft_trait<T>::fftw_input *in; ///< Input image. + std::complex<T> *out; ///< Complex image. + fftw_plan p; ///< Plan. + fftw_plan p_inv; ///< inverted plan. + image2d< std::complex<T> > trans_im; ///< Transformed image. + + }; + + } // end of namespace internal + + namespace transform { + + /*! + ** \brief fft class declaration. + ** + ** \param T Data type. + ** \param which Dispatch. + */ + template <class T, + internal::fft_dispatch which = internal::fft_trait<T>::which > + class fft; + + /*! + ** \brief fft specialization for fft real dispatch. + ** + ** \param T Data type. + */ + template <class T> + class fft<T, internal::fft_real> : public internal::_fft<T> + { + + public: + + /*! + ** \brief Constructor. + ** + ** Initialization of data in order to compute the fft. + ** + ** \param original_im Image to process. + */ + template <typename D> + fft(const image2d<D>& original_im) + { + this->in = (T*) fftw_malloc(original_im.nrows() * original_im.ncols() * sizeof(T)); + this->out = (std::complex<T>*) + fftw_malloc(original_im.nrows() * (original_im.ncols() / 2 + 1) * sizeof(std::complex<T>)); + + for (unsigned row = 0; row < original_im.nrows(); ++row) + for (unsigned col = 0; col < original_im.ncols(); ++col) + this->in[row * original_im.ncols() + col] = opt::at(original_im, row, col); + + this->p = fftw_plan_dft_r2c_2d (original_im.nrows(), original_im.ncols(), + this->in, reinterpret_cast<fftw_complex*>(this->out), FFTW_ESTIMATE); + this->p_inv = fftw_plan_dft_r2c_2d (original_im.nrows(), original_im.ncols(), + this->in, reinterpret_cast<fftw_complex*>(this->out), FFTW_ESTIMATE); + + this->trans_im = image2d< std::complex<T> >(original_im.domain()); + } + + /*! + ** \brief Compute and return the transform. + */ + image2d< std::complex<T> > transform() + { + fftw_execute(this->p); + + unsigned denom = this->trans_im.nrows() * this->trans_im.ncols(); + int i = 0; + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = 0; col <= this->trans_im.ncols() / 2; ++col) + { + this->out[i] = std::complex<T> (this->out[i].real() / denom, this->out[i].imag() / denom); + opt::at(this->trans_im, row, col) = this->out[i]; + ++i; + } + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = this->trans_im.ncols() - 1; col > this->trans_im.ncols() / 2; --col) + opt::at(this->trans_im, row, col) = opt::at(this->trans_im, this->trans_im.nrows() - row - 1, + this->trans_im.ncols() - col - 1); + return this->trans_im; + } + + /*! + ** \brief Compute and return the invert transform. + ** + ** \param R Data type of output image. + */ + template <class R> + image2d<R> transform_inv() + { + // FIXME : Check that R is real + + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = 0; col <= this->trans_im.ncols() / 2; ++col) + this->out[row * (this->trans_im.ncols() / 2 + 1) + col] = + opt::at(this->trans_im, row, col).real(); + + fftw_execute(this->p_inv); + + image2d<R> new_im(this->trans_im.domain()); + int i = 0; + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = 0; col < this->trans_im.ncols(); ++col) + { + opt::at(new_im, row, col) = (this->in[i] >= mln_min(R) ? + (this->in[i] <= mln_max(R) ? + (R)this->in [i] : + mln_min(R)) : + mln_max(R)); + ++i; + } + return new_im; + } + + /*! + ** \brief Shift zero-frequency component of discrete Fourier transform + ** to center of spectrum. + ** + ** \param R The data type of the image returned. + ** + ** The zero-frequency component of discrete Fourier transform are moved + ** to center of the image : + ** + ** \htmlonly + ** <table> + ** <tr><td>1</td><td>2</td></tr> + ** <tr><td>3</td><td>4</td></tr> + ** </table> + ** becomes + ** <table> + ** <tr><td>4</td><td>3</td></tr> + ** <tr><td>2</td><td>1</td></tr> + ** </table> + ** \endhtmlonly + ** + */ + + /* + template <class R> + image2d<R> shift_transform_inv() + { + image2d<R> t = transform_inv<R>(); + image2d<R> st(t.size()); + + // We have to exchange t_1 with t_1_dest and not directly t_3 because + // they have not he same size. + typedef morpher::piece_morpher< image2d<R> > piece_t; + piece_t t_1(t, dpoint2d(0, 0), + image2d_size((t.size().nrows() - 1) / 2, + (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_1_dest(st, dpoint2d(t.nrows() - t_1.nrows(), + t.ncols() - t_1.ncols()), + image2d_size(t_1.nrows(), t_1.ncols(), + t.border())); + piece_t t_2(t, dpoint2d(0, (t.size().ncols() - 1) / 2), + image2d_size((t.size().nrows() - 1) / 2, + t.size().ncols() - (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_2_dest(st, dpoint2d(t.nrows() - t_2.nrows(), 0), + image2d_size(t_2.nrows(), t_2.ncols(), + t.border())); + piece_t t_3(t, dpoint2d((t.size().nrows() - 1) / 2, 0), + image2d_size(t.size().nrows() - (t.size().nrows() - 1) / 2, + (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_3_dest(st, dpoint2d(0, t.ncols() - t_3.ncols()), + image2d_size(t_3.nrows(), t_3.ncols(), + t.border())); + piece_t t_4(t, dpoint2d((t.size().nrows() - 1) / 2, + (t.size().ncols() - 1) / 2), + image2d_size(t.size().nrows() - (t.size().nrows() - 1) / 2, + t.size().ncols() - (t.size().ncols() - 1) / 2, + t.border())); + piece_t t_4_dest(st, dpoint2d(0, 0), + image2d_size(t_4.nrows(), t_4.ncols(), + t.border())); + + oln_iter_type(piece_t) i1(t_1); + for_all(i1) + t_1_dest[i1] = t_1[i1]; + oln_iter_type(piece_t) i2(t_2); + for_all(i2) + t_2_dest[i2] = t_2[i2]; + oln_iter_type(piece_t) i3(t_3); + for_all(i3) + t_3_dest[i3] = t_3[i3]; + oln_iter_type(piece_t) i4(t_4); + for_all(i4) + t_4_dest[i4] = t_4[i4]; + + return st; + } + */ + + + /*! + ** \brief Compute and return the invert transform. + */ + image2d<T> transform_inv() + { + return transform_inv<T>(); + } + + /*! + ** \brief Shift zero-frequency component of discrete Fourier transform + ** to center of spectrum. + */ + /* + image2d<T> shift_transform_inv() + { + return shift_transform_inv<T>(); + } + */ + + }; + + /*! + ** \brief fft specialization for fft complex dispatch. + ** + ** \param T Data type. + ** \param R Complex representation kind. + */ + template <class T> + class fft<T, internal::fft_cplx> : public internal::_fft<T> + { + + public: + + /*! + ** \brief Constructor. + ** + ** Initialization of data in order to compute the fft. + ** + ** \param original_im Image to process. + */ + fft(const image2d< std::complex<T> >& original_im) + { + this->in = fftw_malloc(sizeof(std::complex<T>) * + original_im.nrows() * original_im.ncols()); + this->out = fftw_malloc(sizeof(std::complex<T>) * + original_im.nrows() * original_im.ncols()); + + for (unsigned row = 0; row < original_im.nrows(); ++row) + for (unsigned col = 0; col < original_im.ncols(); ++col) + { + this->in[row * original_im.ncols() + col].re = + original_im(row, col).real(); + this->in[row * original_im.ncols() + col].im = + original_im(row, col).imag(); + } + + this->p = fftw_plan_dft_2d(original_im.nrows(), original_im.ncols(), + this->in, this->out, + FFTW_FORWARD, FFTW_ESTIMATE); + this->p_inv = fftw2d_plan_dft_2d(original_im.nrows(), original_im.ncols(), + this->in, this->out, + FFTW_BACKWARD, FFTW_ESTIMATE); + + this->trans_im = image2d< std::complex<T> >(original_im.domain()); + } + + /*! + ** \brief Compute and return the transform. + */ + image2d< std::complex<T> > transform() + { + fftw_execute(this->p); + + unsigned denom = this->trans_im.nrows() * this->trans_im.ncols(); + int i = 0; + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = 0; col < this->trans_im.ncols(); ++col) + { + this->out[i].re /= denom; + this->out[i].im /= denom; + this->trans_im(row, col) = std::complex<double>(this->out[i].re, + this->out[i].im); + ++i; + } + return this->trans_im; + } + + /*! + ** \brief Compute and return the invert transform. + ** + ** \param R Data type of output image. + */ + template <class R> + image2d< std::complex<R> > transform_inv() + { + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = 0; col < this->trans_im.ncols(); ++col) + { + this->out[row * this->trans_im.ncols() + col].re = this->trans_im(row, col).real(); + this->out[row * this->trans_im.ncols() + col].im = this->trans_im(row, col).imag(); + } + + fftw_execute(this->p_inv); + + image2d< std::complex<R> > new_im(this->trans_im.size()); + int i = 0; + for (unsigned row = 0; row < this->trans_im.nrows(); ++row) + for (unsigned col = 0; col < this->trans_im.ncols(); ++col) + { + new_im(row, col) = this->in[i]; + ++i; + } + return new_im; + } + + /*! + ** \brief Compute and return the invert transform. + */ + image2d< std::complex<T> > transform_inv() + { + return transform_inv<T>(); + } + + }; + + } // end of namespace transform + +} // end of namespace oln + +#endif // ! MLN_TRANSFORM_FFT_HH diff --git a/milena/tests/transform/fft.cc b/milena/tests/transform/fft.cc new file mode 100644 index 0000000..d7f7e63 --- /dev/null +++ b/milena/tests/transform/fft.cc @@ -0,0 +1,92 @@ +// -*- c++ -*- +// Copyright (C) 2004 EPITA Research and Development Laboratory +// +// This file is part of the Milena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, +// Boston, MA 02110-1301, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +#include <mln/transform/fft.hh> +#include <mln/value/int_u8.hh> +#include <mln/io/pgm/load.hh> +#include <mln/io/pgm/save.hh> +#include <mln/opt/at.hh> +#include <mln/debug/println.hh> + +#define CHECK(Condition) \ + if (Condition) \ + std::cout << "OK" << std::endl; \ + else \ + { \ + std::cout << "FAIL" << std::endl; \ + status = 1; \ + } + +using namespace mln; +using namespace transform; +using namespace value; + +int main () +{ + int status = 0; + + image2d<int_u8> im1; + io::pgm::load(im1, "lena.pgm"); + + fft<double> fourier(im1); + + image2d< std::complex<double> > im2 = fourier.transform(); + + image2d<int_u8> im3 = fourier.transform_inv<int_u8>(); + + io::pgm::save(im3, "fft_copy.pgm"); + + image2d<int_u8> fft = fourier.transformed_image_log_magn<int_u8>(true); + // debug::println(fourier.transformed_image()); + io::pgm::save(fft, "fft.pgm"); + + std::cout << "Test: Image == F-1(F(Image)) ... " << std::flush; + // CHECK (im1 == im3); + + image2d<int_u8> out = fourier.transformed_image_clipped_magn<int_u8>(0.01); + + io::pgm::save(out, "fft_trans_clipped.pgm"); + + out = fourier.transformed_image_log_magn<int_u8>(1, 100); + + io::pgm::save(out, "fft_trans_log.pgm"); + + for (int row = 40; row < im2.nrows() - 40; ++row) + for (int col = 0; col < im2.ncols(); ++col) + opt::at(im2, row, col) = 0; + + for (int row = 0; row < im2.nrows(); ++row) + for (int col = 40; col < im2.ncols() - 40; ++col) + opt::at(im2, row, col) = 0; + + out = fourier.transform_inv<int_u8>(); + + io::pgm::save(out, "fft_low_pass.pgm"); + + return status; +} -- 1.7.10.4

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olena: branch fft updated: olena-2.0-637-g8b31df6
by git＠lrde.epita.fr 26 Aug '13

26 Aug '13

This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "Olena, a generic and efficient image processing platform". 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fc1b111887113926a038df4cc292561bf1d5f31e (commit) via 674e43ac4187e2adf6a4826c9bc77c886d0cec89 (commit) via 699326af505c203e1eeb4a2d67d2a0d85d5cd6d1 (commit) via f31589e55f08e02a6b3f450015c892600024ec15 (commit) This update added new revisions after undoing existing revisions. That is to say, the old revision is not a strict subset of the new revision. This situation occurs when you --force push a change and generate a repository containing something like this: * -- * -- B -- O -- O -- O (70839e9dd38681e1a878aef7704f9fe5cea714df) \ N -- N -- N (8b31df65d090f1ac9965f0feb4d3bb68a17948f1) When this happens we assume that you've already had alert emails for all of the O revisions, and so we here report only the revisions in the N branch from the common base, B. Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- 8b31df6 Split the interface of the FFT off from its implementation. 588a6d4 Stylistic changes in the Fast Fourier Transform. 089d5ff Remove dead code in the Fast Fourier Transform. 6919bfe Minor corrections in the Fast Fourier Transform. 870ac7a Improve the test of the Fast Fourier Transform. 1e9b9bd Update copyright headers. 3f5d9e5 headers.mk, tests/unit_test/unit-tests.mk: Regen. 02720ff Exercise the Fast Fourier Transform. bee3fa8 Fix the Fast Fourier Transform. 31f1d70 Ask configure to try to find FFTW (version 3). 5f1d602 Import the FFTW-based Fast Fourier Transform. ----------------------------------------------------------------------- Summary of changes: AUTHORS | 283 +- COPYING | 14 +- ChangeLog | 624 +++- HACKING | 97 +- Makefile.am | 43 +- NEWS | 35 + 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swilena/int_u32.i create mode 100644 swilena/ppm.ixx create mode 100644 swilena/python/complex2-misc.py delete mode 100644 swilena/python/data.py create mode 100644 swilena/python/data.py.in create mode 100644 swilena/python/installcheck.mk delete mode 100644 swilena/python/ltihooks.py create mode 100644 swilena/python/max-tree.py create mode 100644 swilena/python/sps-gdb-local.in create mode 100644 swilena/rgb.ixx create mode 100644 swilena/rgb8.i delete mode 100644 vcs/oln.rb hooks/post-receive -- Olena, a generic and efficient image processing platform

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