July 2008 - Olena-patches

2114: More on the documnention of the test on complexes.
by Roland Levillain 31 Jul '08

31 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/milena Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> More on the documnention of the test on complexes. * tests/core/complex.cc: Add the adjacent graph of the complex in comment. complex.cc | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) Index: tests/core/complex.cc --- tests/core/complex.cc (revision 2114) +++ tests/core/complex.cc (working copy) @@ -37,18 +37,21 @@ { using namespace mln; - /* A 2-d (simplicial) complex. + /* A 2-d (simplicial) complex and its adjacency graph. v0 e3 v3 - o-----------o - / \ / - / \ t2 / - e0 / \ / e4 - / t1 \e1 / - / \ / - o-----------o + o-----------o v0----e3----v3 + / \ ,-----. / / \ | / + / . \ \ t2/ / / \ t2 / + e0 / / \ e1\ / / e4 e0. ,e1� `e4 + / /t1 \ \ ' / / t1 \ / + / `-----' \ / / | \ / + o-----------o v1----e2----v2 v1 e2 v2 + v = vertex + e = edge + t = triangle */

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2113: Add a first implementation of general complexes.
by Roland Levillain 30 Jul '08

30 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/milena Complex-based images will follow... soon. Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Add a first implementation of general complexes. * mln/core/complex.hh, mln/core/face.hh: New. * tests/core/complex.cc: New test. * tests/core/Makefile.am (check_PROGRAMS): Add complex. (complex_SOURCES): New. Set to complex.cc. mln/core/complex.hh | 347 +++++++++++++++++++++++++++++++++++++++++++++++++ mln/core/face.hh | 287 ++++++++++++++++++++++++++++++++++++++++ tests/core/Makefile.am | 2 tests/core/complex.cc | 75 ++++++++++ 4 files changed, 711 insertions(+) Index: mln/core/complex.hh --- mln/core/complex.hh (revision 0) +++ mln/core/complex.hh (revision 0) @@ -0,0 +1,347 @@ +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_CORE_COMPLEX_HH +# define MLN_CORE_COMPLEX_HH + +/// \file mln/core/complex.hh +/// \brief Structures for general complexes. +/// +/// A complexes defines a topological space which can be used as a +/// support for an image (i.e., as site sets). +/// +/// FIXME: More. + +# include <iosfwd> + +# include <mln/metal/bool.hh> + +# include <mln/core/face.hh> + + +namespace mln +{ + + // Forward declaration. + namespace internal + { + template <unsigned N, unsigned D> + struct faces_set_mixin; + } + + + /*----------. + | Complex. | + `----------*/ + + /// \brief General complex of dimension \p D. + template <unsigned D> + class complex : private internal::faces_set_mixin<D, D> + { + public: + /// Complex construction. + /// \{ + + /// \brief Add a 0-face to the complex. + face_handle<0u, D> add_face(); + + /// \brief Add a \p (N+1)-face to the complex (with \p N >= 0). + /// + /// \param adjacent_faces The (\p N-1)-faces adjacent to the new + /// \p N-face. + template <unsigned N> + face_handle<N + 1, D> add_face(const faces_set<N, D>& adjacent_faces); + /// \} + + /// Pretty-printing. + /// \{ + /// Print the complex. + void print(std::ostream& ostr) const; + /// Print the faces of dimension \p N. + template <unsigned N> + void print_faces(std::ostream& ostr) const; + /// \} + + private: + /// Accessors. + /// \{ + template <unsigned N, unsigned D_> friend class face_handle; + + template <unsigned N> + face<N, D>& face_(unsigned face_id); + + template <unsigned N> + const face<N, D>& face_(unsigned face_id) const; + /// \} + + /// \brief connect two faces. + /// + /// \param f1 A face of dimension \p N + /// \param f2 A face of dimension \p N + 1 + /// + /// \pre \p N must be lower or equal to \p D. + template <unsigned N> + void connect_(const face_handle<N, D>& f1, + const face_handle<N + 1, D>& f2); + }; + + + // FIXME: Move and renamed as mln::debug::println? + /// Pretty print a complex. + template <unsigned D> + std::ostream& + operator<<(std::ostream& ostr, const complex<D>& c); + + + /*---------------------. + | Faces of a complex. | + `---------------------*/ + + // FIXME: Move these declarations after � Complex �. + + /// The sets of n-faces of a complex are recursively aggregated as + /// mixins. + namespace internal + { + + // FIXME: Factor common things here. + + /// \brief Recursive mixins of set of faces. + /// \{ + template <unsigned N, unsigned D> + struct faces_set_mixin : faces_set_mixin<N - 1, D> + { + std::vector< face<N, D> > faces_; + + /// Pretty-printing. + /// \{ + /// Print the faces of dimension \p N. + void print(std::ostream& ostr) const; + /// Recursively print the faces of dimensions 0 to \p N + /// (in ascending dimension). + void print_rec_asc(std::ostream& ostr) const; + /// \} + }; + + template <unsigned D> + struct faces_set_mixin<0u, D> + { + std::vector< face<0u, D> > faces_; + + /// Pretty-printing. + /// \{ + /// Print the faces of dimension 0. + void print(std::ostream& ostr) const; + void print_rec_asc(std::ostream& ostr) const; + /// \} + }; + /// \} + + } // end of namespace mln::internal + + + +# ifndef MLN_INCLUDE_ONLY + + template <unsigned D> + face_handle<0u, D> + complex<D>::add_face() + { + /* FIXME: This is not thread-proof (these two lines should + form an atomic section). */ + internal::faces_set_mixin<0u, D>::faces_.push_back(face<0u, D>()); + unsigned id = internal::faces_set_mixin<0u, D>::faces_.size() - 1; + + return face_handle<0u, D>(*this, id); + } + + template <unsigned D> + template <unsigned N> + face_handle<N + 1, D> + complex<D>::add_face(const faces_set<N, D>& adjacent_faces) + { + // FIXME: Ensure ADJACENT_FACES are already part of the complex. + + face<N + 1, D> f; + /* FIXME: This is not thread-proof (these two lines should + form an atomic section). */ + internal::faces_set_mixin<N + 1, D>::faces_.push_back(f); + unsigned id = internal::faces_set_mixin<N + 1, D>::faces_.size() - 1; + + face_handle<N + 1, D> fh(*this, id); + // Connect F and its ADJACENT_FACES. + /* FIXME: Use <fonctional> or Milena's functors. */ + for (typename std::vector< face_handle<N, D> >::const_iterator a = + adjacent_faces.faces().begin(); + a != adjacent_faces.faces().end(); ++a) + connect_(*a, fh); + + return fh; + } + + template <unsigned D> + template <unsigned N> + face<N, D>& + complex<D>::face_(unsigned face_id) + { + return internal::faces_set_mixin<N, D>::faces_[face_id]; + } + + template <unsigned D> + template <unsigned N> + const face<N, D>& + complex<D>::face_(unsigned face_id) const + { + return internal::faces_set_mixin<N, D>::faces_[face_id]; + } + + template <unsigned D> + template <unsigned N> + void + complex<D>::connect_(const face_handle<N, D>& f1, + const face_handle<N + 1, D>& f2) + { + // Ensure N is compatible with D. + metal::bool_< N <= D >::check(); + + f1.get().connect_higher_dim_face(f2); + f2.get().connect_lower_dim_face(f1); + } + + + /*------------------. + | Pretty-printing. | + `------------------*/ + + template <unsigned D> + std::ostream& + operator<<(std::ostream& ostr, const complex<D>& c) + { + c.print(ostr); + return ostr; + } + + template <unsigned D> + void + complex<D>::print(std::ostream& ostr) const + { + internal::faces_set_mixin<D, D>::print_rec_asc(ostr); + } + + template <unsigned D> + template <unsigned N> + void + complex<D>::print_faces(std::ostream& ostr) const + { + // Ensure N is compatible with D. + metal::bool_< N <= D >::check(); + + internal::faces_set_mixin<N, D>::print(ostr); + } + + + namespace internal + { + + // FIXME: Factor common things here. + + template <unsigned N, unsigned D> + void + faces_set_mixin<N, D>::print_rec_asc(std::ostream& ostr) const + { + faces_set_mixin<N - 1, D>::print_rec_asc(ostr); + print(ostr); + } + + template <unsigned D> + void + faces_set_mixin<0, D>::print_rec_asc(std::ostream& ostr) const + { + print(ostr); + } + + template <unsigned N, unsigned D> + void + faces_set_mixin<N, D>::print(std::ostream& ostr) const + { + ostr << "Faces of dimension " << N + << " and their ajacent faces of dimension " + << N - 1 << " and " + << N + 1 << std::endl; + for (unsigned f = 0; f < faces_.size(); ++f) + { + ostr << " " << f << ": dim " << N - 1 << ": { "; + for (typename std::vector< face_handle<N - 1, D> >::const_iterator l = + faces_[f].lower_dim_faces_.begin(); + l != faces_[f].lower_dim_faces_.end(); + ++l) + ostr << l->face_id_ << " "; + ostr << "}, dim " << N + 1 << ": { "; + for (typename std::vector< face_handle<N + 1, D> >::const_iterator h = + faces_[f].higher_dim_faces_.begin(); + h != faces_[f].higher_dim_faces_.end(); + ++h) + ostr << h->face_id_ << " "; + ostr << "}"; + ostr << std::endl; + } + } + + template <unsigned D> + void + faces_set_mixin<0u, D>::print(std::ostream& ostr) const + { + // FIXME: Much could be factored with the previous routine. + const unsigned N = 0; + ostr << "Faces of dimension " << N + << " and their ajacent faces of dimension " + << N + 1 << std::endl; + for (unsigned f = 0; f < faces_.size(); ++f) + { + ostr << " " << f << " dim " << N + 1 << ": { "; + for (typename std::vector< face_handle<N + 1, D> >::const_iterator h = + faces_[f].higher_dim_faces_.begin(); + h != faces_[f].higher_dim_faces_.end(); + ++h) + ostr << h->face_id_ << " "; + ostr << "}"; + ostr << std::endl; + } + } + + + // FIXME: Handle faces_set_mixin<D, D>::print. + + + } // end of namespace mln::internal + +# endif // ! MLN_INCLUDE_ONLY + +} // end of namespace mln + + +#endif // ! MLN_CORE_COMPLEX_HH Index: mln/core/face.hh --- mln/core/face.hh (revision 0) +++ mln/core/face.hh (revision 0) @@ -0,0 +1,287 @@ +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. +// reasons why the executable file might be covered by the GNU General +// Public License. + +#ifndef MLN_CORE_FACE_HH +# define MLN_CORE_FACE_HH + +/// \file mln/core/face.hh +/// \brief Face of a complex. +/// +/// FIXME: More. + +#include <vector> + +#include <mln/core/contract.hh> + + +namespace mln +{ + + // Forward declarations. + template <unsigned D> class complex; + template <unsigned N, unsigned D> class face_handle; + namespace internal + { + template <unsigned N, unsigned D> + struct faces_set_mixin; + } + + + /*-------. + | Face. | + `-------*/ + + /* FIXME: we might want to factor connect_{higher,lower}_dim_cell + and {higher,lower_dim_faces_} as member of super classes. */ + + template <unsigned N, unsigned D> + class face + { + public: + void connect_higher_dim_face(const face_handle<N + 1, D>& f); + void connect_lower_dim_face (const face_handle<N - 1, D>& f); + + private: + friend class mln::internal::faces_set_mixin<N, D>; + + // FIXME: Provide accessors instead of using `friend' if there are + // clients other than mln::internal::faces_set_mixin<N, D>. + std::vector< face_handle<N + 1, D> > higher_dim_faces_; + std::vector< face_handle<N - 1, D> > lower_dim_faces_; + }; + + template <unsigned D> + class face<0u, D> + { + public: + void connect_higher_dim_face(const face_handle<1u, D>& f); + + private: + friend class mln::internal::faces_set_mixin<0, D>; + + // FIXME: Provide accessors instead of using `friend; if there are + // clients other than mln::internal::faces_set_mixin<0, D>. + std::vector< face_handle<1u, D> > higher_dim_faces_; + }; + + // FIXME: Handle face<0u, 0u>. + + + /*--------------. + | Face handle. | + `--------------*/ + + // Face handle in a complex. + template <unsigned N, unsigned D> + struct face_handle + { + face_handle(complex<D>& complex, unsigned face_id); + + /// Copy and assignment. + /// \{ + face_handle(const face_handle<N, D>& rhs); + face_handle<N, D>& operator=(const face_handle<N, D>& rhs); + /// \} + + /// Accessors. + /// \{ + /// Return the mln::face pointed by this handle. + face<N, D>& get() const; + /// \} + + /* FIXME: Hide data. */ + // A const face_handle can be used to modify a complex. + mutable complex<D>& c_; + unsigned face_id_; + }; + + template <unsigned N, unsigned D> + face_handle<N, D> + make_face_handle(const complex<D>& c, unsigned face_id); + + + /*----------------------. + | Set of face handles. | + `----------------------*/ + + /// \brief Set of face handles of dimension \p N. + template <unsigned N, unsigned D> + class faces_set + { + public: + void add(const face_handle<N, D>& f); + + /// \brief Accessors. + /// + /// Return the set of handles. + /// \{ + const std::vector< face_handle<N, D> >& faces() const; + /// \} + + private: + friend class mln::complex<D>; + + // FIXME: Rename this as `handles_'? + std::vector< face_handle<N, D> > faces_; + }; + + + /// Construction helpers for mln::faces_set. + /// \{ + template <unsigned N, unsigned D> + faces_set<N, D> + operator+(const face_handle<N, D>& f1, const face_handle<N, D>& f2); + + template <unsigned N, unsigned D> + faces_set<N, D> + operator+(const faces_set<N, D>& fs, const face_handle<N, D>& f); + /// \} + + + +# ifndef MLN_INCLUDE_ONLY + + /*--------------. + | Face handle. | + `--------------*/ + + template <unsigned N, unsigned D> + face_handle<N, D>::face_handle(complex<D>& c, unsigned face_id) + : c_(c), face_id_(face_id) + { + } + + template <unsigned N, unsigned D> + face_handle<N, D>::face_handle(const face_handle<N, D>& rhs) + : c_(rhs.c_), face_id_(rhs.face_id_) + { + } + + template <unsigned N, unsigned D> + face_handle<N, D>& + face_handle<N, D>::operator=(const face_handle<N, D>& rhs) + { + if (&rhs != this) + { + c_ = rhs.c_; + face_id_ = rhs.face_id_; + } + return *this; + } + + template <unsigned N, unsigned D> + face<N, D>& + face_handle<N, D>::get() const + { + return c_.template face_<N>(face_id_); + } + + + template <unsigned N, unsigned D> + face_handle<N, D> + make_face_handle(const complex<D>& c, unsigned face_id) + { + return face_handle<N, D>(c, face_id); + } + + + /*--------. + | Faces. | + `--------*/ + + template <unsigned N, unsigned D> + void + face<N, D>::connect_higher_dim_face(const face_handle<N + 1, D>& f) + { + higher_dim_faces_.push_back(f); + } + + template <unsigned N, unsigned D> + void + face<N, D>::connect_lower_dim_face(const face_handle<N - 1, D>& f) + { + lower_dim_faces_.push_back(f); + } + + template <unsigned D> + void + face<0u, D>::connect_higher_dim_face(const face_handle<1u, D>& f) + { + higher_dim_faces_.push_back(f); + } + + + /*---------------. + | Set of faces. | + `---------------*/ + + template <unsigned N, unsigned D> + void + faces_set<N, D>::add(const face_handle<N, D>& f) + { + // Check consistency. + if (!faces_.empty()) + mln_assertion(&faces_.front().c_ == &f.c_); + + /* FIXME: This is not thread-proof (these two lines should + form an atomic section). */ + faces_.push_back (f); + } + + template <unsigned N, unsigned D> + const std::vector< face_handle<N, D> >& + faces_set<N, D>::faces() const + { + return faces_; + } + + + template <unsigned N, unsigned D> + faces_set<N, D> + operator+(const face_handle<N, D>& f1, const face_handle<N, D>& f2) + { + faces_set<N, D> fs; + fs.add(f1); + fs.add(f2); + return fs; + } + + template <unsigned N, unsigned D> + faces_set<N, D> + operator+(const faces_set<N, D>& fs, const face_handle<N, D>& f) + { + faces_set<N, D> fs2(fs); + fs2.add(f); + return fs2; + } + +# endif // ! MLN_INCLUDE_ONLY + +} // end of namespace mln + + +#endif // ! MLN_CORE_FACE_HH Index: tests/core/complex.cc --- tests/core/complex.cc (revision 0) +++ tests/core/complex.cc (revision 0) @@ -0,0 +1,75 @@ +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. This exception does not however invalidate any other +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file tests/core/complex.cc +/// \brief Test of mln::complex. + +#include <iostream> + +#include <mln/core/complex.hh> + + +int main() +{ + using namespace mln; + + /* A 2-d (simplicial) complex. + + v0 e3 v3 + o-----------o + / \ / + / \ t2 / + e0 / \ / e4 + / t1 \e1 / + / \ / + o-----------o + v1 e2 v2 + + */ + + + complex<2> c; + + // 0-faces (points). + face_handle<0, 2> v0 = c.add_face(); + face_handle<0, 2> v1 = c.add_face(); + face_handle<0, 2> v2 = c.add_face(); + face_handle<0, 2> v3 = c.add_face(); + + // 1-faces (segments). + face_handle<1, 2> e0 = c.add_face(v0 + v1); + face_handle<1, 2> e1 = c.add_face(v0 + v2); + face_handle<1, 2> e2 = c.add_face(v1 + v2); + face_handle<1, 2> e3 = c.add_face(v0 + v3); + face_handle<1, 2> e4 = c.add_face(v2 + v3); + + // 2-faces (triangles). + face_handle<2, 2> t0 = c.add_face(e0 + e1 + e2); + face_handle<2, 2> t1 = c.add_face(e1 + e3 + e4); + + std::cout << c << std::endl; +} Index: tests/core/Makefile.am --- tests/core/Makefile.am (revision 2113) +++ tests/core/Makefile.am (working copy) @@ -12,6 +12,7 @@ clock_neighb2d \ clock_test \ clone \ + complex \ \ decorated_image \ dpoint1d \ @@ -98,6 +99,7 @@ clock_neighb2d_SOURCES = clock_neighb2d.cc clock_test_SOURCES = clock_test.cc clone_SOURCES = clone.cc +complex_SOURCES = complex.cc decorated_image_SOURCES = decorated_image.cc dpoint1d_SOURCES = dpoint1d.cc

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2113: Fix external libraries linkage in apps/statues/ on GNU/Linux.
by Roland Levillain 30 Jul '08

30 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/milena Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Fix external libraries linkage in apps/statues/ on GNU/Linux. * apps/statues/Makefile.am: Include trimesh's gluit.mk to link with gluit/OpenGL/GLUT. (AM_LDFLAGS): New. Set to `$(GLFLAGS)'. (LDADD): Append `$(GLLIBS)'. Makefile.am | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) Index: apps/statues/Makefile.am --- apps/statues/Makefile.am (revision 2112) +++ apps/statues/Makefile.am (working copy) @@ -1,11 +1,18 @@ ## Process this file through Automake to produce Makefile.in -*- Makefile -*- +# Linking with gluit and GLUT/OpenGL. +gluit_builddir = $(top_builddir)/external/trimesh/gluit +include $(top_srcdir)/external/trimesh/gluit/gluit.mk + + # Find Milena and trimesh headers. AM_CPPFLAGS = -I$(top_srcdir)/milena -I$(top_srcdir)/external/trimesh/include # Produce fast code. AM_CXXFLAGS = -O3 -DNDEBUG -ggdb -# Find the trimesh archive. -LDADD = -L$(top_builddir)/external/trimesh/libsrc -ltrimesh +# Find the trimesh library and its dependencies. +AM_LDFLAGS = $(GLFLAGS) +LDADD = -L$(top_builddir)/external/trimesh/libsrc -ltrimesh $(GLLIBS) + bin_PROGRAMS = mesh-segm mesh-skel mesh_segm_SOURCES = mesh-segm.cc io.hh

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2111: Make Swilena actually optional.
by Roland Levillain 30 Jul '08

30 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Make Swilena actually optional. * Makefile.am: Compile Swilena only when asked for. Makefile.am | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) Index: Makefile.am --- Makefile.am (revision 2111) +++ Makefile.am (working copy) @@ -4,5 +4,6 @@ SUBDIRS = build-aux external milena -# FIXME: Make Swilena optional (see TC's equipment). +if ENABLE_SWILENA SUBDIRS += swilena +endif ENABLE_SWILENA

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2110: Handle Darwin, in order to use trimesh's gluit.mk.
by Roland Levillain 30 Jul '08

30 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Handle Darwin, in order to use trimesh's gluit.mk. * configure.ac: Add a new conditional for Darwin-based hosts. configure.ac | 18 +++++++++++++----- 1 file changed, 13 insertions(+), 5 deletions(-) Index: configure.ac --- configure.ac (revision 2110) +++ configure.ac (working copy) @@ -82,9 +82,17 @@ fi -## ----------- ## -## Libraries. ## -## ----------- ## +## ------------------ ## +## Libraries set up. ## +## ------------------ ## + +# Use Libtool. +AC_PROG_LIBTOOL + +# Check for Darwin. +AC_CANONICAL_HOST +AM_CONDITIONAL([DARWIN], [echo "$host_os" | grep '^darwin']) + # (Bundled) trimesh2 library. AC_CONFIG_SUBDIRS([external/trimesh]) @@ -102,11 +110,11 @@ ## Swilena. ## ## --------- ## -AC_PROG_LIBTOOL - OLN_WITH_SWILENA([with_swilena=yes], [with_swilena=no]) AM_CONDITIONAL([ENABLE_SWILENA], [test x$with_swilena = xyes]) +# FIXME: Should we still configure these files if ENABLE_SWILENA is +# false? AC_CONFIG_FILES([swilena/Makefile swilena/python/Makefile])

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2110: Fix a compilation bug on GNU/Linux.
by Roland Levillain 30 Jul '08

30 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/external/trimesh Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Fix a compilation bug on GNU/Linux. * libsrc/ICP.cc: Include cstring. ICP.cc | 1 + 1 file changed, 1 insertion(+) Index: libsrc/ICP.cc --- libsrc/ICP.cc (revision 2109) +++ libsrc/ICP.cc (working copy) @@ -6,6 +6,7 @@ Routines for doing ICP. */ +#include <cstring> #include <cmath> #include <algorithm> #include <stdio.h>

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2108: Libtoolize trimesh.
by Roland Levillain 30 Jul '08

30 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/external/trimesh Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Libtoolize trimesh. * configure.ac: Check for Libtool. * utilsrc/Makefile.am (LDADD): Remove `-L$(top_builddir)/gluit'. (GLFLAGS, GLLIBS): Move gluit-related link variables... * gluit/gluit.mk: ...here (new file). * gluit/Makefile.am (lib_LIBRARIES, libgluit_a_SOURCES) * libsrc/Makefile.am (lib_LIBRARIES, libtrimesh_a_SOURCES): Turn into... * gluit/Makefile.am (lib_LTLIBRARIES, libgluit_la_SOURCES) * libsrc/Makefile.am (lib_LTLIBRARIES, libtrimesh_la_SOURCES): ...these. configure.ac | 3 +++ gluit/Makefile.am | 7 +++---- gluit/gluit.mk | 16 ++++++++++++++++ libsrc/Makefile.am | 4 ++-- utilsrc/Makefile.am | 15 ++++++--------- 5 files changed, 30 insertions(+), 15 deletions(-) Index: configure.ac --- configure.ac (revision 2108) +++ configure.ac (working copy) @@ -41,6 +41,9 @@ ## Libraries set up. ## ## ------------------ ## +# Use Libtool. +AC_PROG_LIBTOOL + # Check for Darwin. AC_CANONICAL_HOST AM_CONDITIONAL([DARWIN], [echo "$host_os" | grep '^darwin']) Index: utilsrc/Makefile.am --- utilsrc/Makefile.am (revision 2108) +++ utilsrc/Makefile.am (working copy) @@ -1,16 +1,13 @@ ## Process this file through Automake to produce Makefile.in -*- Makefile -*- +# Linking with gluit and GLUT/OpenGL. +gluit_builddir = $(top_builddir)/gluit +include $(top_srcdir)/gluit/gluit.mk + + AM_CPPFLAGS = -I$(top_srcdir)/include -LDADD = -L$(top_builddir)/libsrc -L$(top_builddir)/gluit -ltrimesh -lm +LDADD = -L$(top_builddir)/libsrc -ltrimesh -lm -# FIXME: Handle other OSes as well (Win32, SunOS, etc.) -if DARWIN - GLFLAGS = -framework GLUT -framework OpenGL - GLLIBS = -lgluit -else !DARWIN - GLFLAGS = - GLLIBS = -lgluit -lGL -lGLU -lX11 -lXmu -lXi -endif !DARWIN bin_PROGRAMS = \ mesh_align \ Index: gluit/gluit.mk --- gluit/gluit.mk (revision 0) +++ gluit/gluit.mk (revision 0) @@ -0,0 +1,16 @@ +## Linking with gluit and GLUT/OpenGL. -*- Automake -*- + +## ------------------------------------------------------------------ ## +## Before loading this file, you must define `gluit_builddir' first. ## +## ------------------------------------------------------------------ ## + +GLFLAGS = -L$(gluit_builddir) +GLLIBS = -lgluit + +# FIXME: Handle other OSes as well (Win32, SunOS, etc.) +if DARWIN + GLFLAGS += -L$(gluit_builddir) -framework GLUT -framework OpenGL +else !DARWIN + GLFLAGS += -L$(gluit_builddir) + GLLIBS += -lGL -lGLU -lX11 -lXmu -lXi +endif !DARWIN Index: gluit/Makefile.am --- gluit/Makefile.am (revision 2108) +++ gluit/Makefile.am (working copy) @@ -4,10 +4,9 @@ AM_CPPFLAGS = -I$(top_builddir) AM_CPPFLAGS += -I$(top_srcdir)/include -I$(top_srcdir)/include/GL -# FIXME: We should use Libtool instead. -lib_LIBRARIES = libgluit.a +lib_LTLIBRARIES = libgluit.la -libgluit_a_SOURCES = \ +libgluit_la_SOURCES = \ glui_algebra3.h \ glui_arcball.h \ glui_quaternion.h \ @@ -64,7 +63,7 @@ # These files are not needed on Darwin (Mac OS X). if ! DARWIN - libgluit_a_SOURCES += \ + libgluit_la_SOURCES += \ freeglut_internal.h \ freeglut_teapot_data.h \ \ Index: libsrc/Makefile.am --- libsrc/Makefile.am (revision 2108) +++ libsrc/Makefile.am (working copy) @@ -3,9 +3,9 @@ AM_CPPFLAGS = -I$(top_srcdir)/include # FIXME: We should use Libtool instead. -lib_LIBRARIES = libtrimesh.a +lib_LTLIBRARIES = libtrimesh.la -libtrimesh_a_SOURCES = \ +libtrimesh_la_SOURCES = \ TriMesh_bounding.cc \ TriMesh_connectivity.cc \ TriMesh_curvature.cc \

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2108: Speed up Swilena.
by Roland Levillain 28 Jul '08

28 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/swilena Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Speed up Swilena. * python/Makefile.am (TOOLS_CXXFLAGS, AM_CXXFLAGS): New. Use flags for tools, that use optimization options. Makefile.am | 2 ++ 1 file changed, 2 insertions(+) Index: python/Makefile.am --- python/Makefile.am (revision 2107) +++ python/Makefile.am (working copy) @@ -8,6 +8,8 @@ CLEANFILES = AM_CPPFLAGS = -I$(PYTHONINC) -I$(top_srcdir)/milena +TOOLS_CXXFLAGS = @TOOLS_CXXFLAGS@ +AM_CXXFLAGS = $(TOOLS_CXXFLAGS) AM_SWIGFLAGS = -c++ -python -I$(top_srcdir)/milena ## We build modules, not plain libs. AM_LDFLAGS = -avoid-version -module -shared

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2106: Wrap mln::morpho::dilation.
by Roland Levillain 28 Jul '08

28 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/swilena Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Wrap mln::morpho::dilation. * morpho.ixx: Wrap mln::morpho::dilation. * image2d_int.i, image2d_int_u8.i: Instantiate it. * python/lena.py: Exercise it. image2d_int.i | 1 + image2d_int_u8.i | 2 ++ morpho.ixx | 11 ++++++++--- python/lena.py | 6 +++++- 4 files changed, 16 insertions(+), 4 deletions(-) Index: morpho.ixx --- morpho.ixx (revision 2106) +++ morpho.ixx (working copy) @@ -32,6 +32,7 @@ %module morpho %{ +#include "mln/morpho/dilation.hh" #include "mln/morpho/erosion.hh" %} @@ -42,10 +43,14 @@ namespace morpho { - template <typename I, typename W> /* FIXME: How can we handle concrete in Swilena? Simplify this - for the moment, and use I directly. */ -// typename mln::trait::concrete< I >::ret + for the moment, and use I directly as return type. */ + + template <typename I, typename W> + I + dilation(const Image<I>& input, const Window<W>& win); + + template <typename I, typename W> I erosion(const Image<I>& input, const Window<W>& win); Index: image2d_int.i --- image2d_int.i (revision 2106) +++ image2d_int.i (working copy) @@ -49,4 +49,5 @@ %} %include "morpho.ixx" +%template(dilation) mln::morpho::dilation< mln::image2d<int>, mln::window2d >; %template(erosion) mln::morpho::erosion< mln::image2d<int>, mln::window2d >; Index: image2d_int_u8.i --- image2d_int_u8.i (revision 2106) +++ image2d_int_u8.i (working copy) @@ -58,5 +58,7 @@ %} %include "morpho.ixx" +%template(dilation) mln::morpho::dilation< mln::image2d< mln::value::int_u<8> >, + mln::window2d >; %template(erosion) mln::morpho::erosion< mln::image2d< mln::value::int_u<8> >, mln::window2d >; Index: python/lena.py --- python/lena.py (revision 2106) +++ python/lena.py (working copy) @@ -35,5 +35,9 @@ lena = os.path.join (img_dir, "lena.pgm") ima = image2d_int_u8.load(lena) + eroded = image2d_int_u8.erosion (ima, win_c4p()) -image2d_int_u8.save(eroded, "out.pgm") +image2d_int_u8.save(eroded, "eroded.pgm") + +dilated = image2d_int_u8.dilation (ima, win_c4p()) +image2d_int_u8.save(dilated, "dilated.pgm")

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2106: Wrap mln::image2d<int_u8> as well as I/O routines.
by Roland Levillain 27 Jul '08

27 Jul '08

https://svn.lrde.epita.fr/svn/oln/trunk/swilena Index: ChangeLog from Roland Levillain <roland(a)lrde.epita.fr> Wrap mln::image2d<int_u8> as well as I/O routines. * pgm.ixx, int_u8.i, image2d_int_u8.i: New. * Makefile.am (EXTRA_DIST): Add pgm.ixx, image2d_int_u8.i and int_u8.i. * fill.ixx, println.ixx: Fix doxygen headers. * image2d_int.i: Typo. * python/lena.py: New test. * python/Makefile.am: Handle modules int_u8 and image2d_int_u8. (top_srcdir): Add top_srcdir and top_builddir into the environment. (TESTS): Add lena.py. * python/swilena.py: Import image2d_int_u8. Makefile.am | 6 +++-- fill.ixx | 2 - image2d_int.i | 2 - image2d_int_u8.i | 62 +++++++++++++++++++++++++++++++++++++++++++++++++++++ int_u8.i | 38 ++++++++++++++++++++++++++++++++ pgm.ixx | 59 ++++++++++++++++++++++++++++++++++++++++++++++++++ println.ixx | 2 - python/Makefile.am | 27 +++++++++++++++++++---- python/lena.py | 39 +++++++++++++++++++++++++++++++++ python/swilena.py | 1 10 files changed, 229 insertions(+), 9 deletions(-) Index: python/lena.py --- python/lena.py (revision 0) +++ python/lena.py (revision 0) @@ -0,0 +1,39 @@ +#! /usr/bin/env python + +# Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +# +# This file is part of the Olena Library. This library is free +# software; you can redistribute it and/or modify it under the terms +# of the GNU General Public License version 2 as published by the +# Free Software Foundation. +# +# This library is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with this library; see the file COPYING. If not, write to +# the Free Software Foundation, 51 Franklin Street, Fifth Floor, +# Boston, MA 02111-1307, USA. +# +# As a special exception, you may use this file as part of a free +# software library without restriction. Specifically, if other files +# instantiate templates or use macros or inline functions from this +# file, or you compile this file and link it with other files to +# produce an executable, this file does not by itself cause the +# resulting executable to be covered by the GNU General Public +# License. +# reasons why the executable file might be covered by the GNU General +# Public License. + +import os +from swilena import * + +top_srcdir = os.environ["top_srcdir"] +img_dir = os.path.join(top_srcdir, "milena", "img") +lena = os.path.join (img_dir, "lena.pgm") + +ima = image2d_int_u8.load(lena) +eroded = image2d_int_u8.erosion (ima, win_c4p()) +image2d_int_u8.save(eroded, "out.pgm") Index: python/Makefile.am --- python/Makefile.am (revision 2105) +++ python/Makefile.am (working copy) @@ -50,6 +50,16 @@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/_point2d-wrap.Pcc@am__quote@ nodist_python_PYTHON += point2d.py +## int_u8. +pyexec_LTLIBRARIES += _int_u8.la +nodist__int_u8_la_SOURCES = int_u8-wrap.cc +_int_u8_la_LIBADD = $(AM_LIBADD) +CLEANFILES += $(nodist__int_u8_la_SOURCES) int_u8.py int_u8.py[co] +## Include the dependency files. Copied from Automake's generated +## case for C++. +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/_int_u8-wrap.Pcc@am__quote@ +nodist_python_PYTHON += int_u8.py + ## dpoint2d. pyexec_LTLIBRARIES += _dpoint2d.la nodist__dpoint2d_la_SOURCES = dpoint2d-wrap.cc @@ -80,6 +90,16 @@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/_image2d_int-wrap.Pcc@am__quote@ nodist_python_PYTHON += image2d_int.py +## image2d_int_u8. +pyexec_LTLIBRARIES += _image2d_int_u8.la +nodist__image2d_int_u8_la_SOURCES = image2d_int_u8-wrap.cc +_image2d_int_u8_la_LIBADD = $(AM_LIBADD) +CLEANFILES += $(nodist__image2d_int_u8_la_SOURCES) image2d_int_u8.py image2d_int_u8.py[co] +## Include the dependency files. Copied from Automake's generated +## case for C++. +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/_image2d_int_u8-wrap.Pcc@am__quote@ +nodist_python_PYTHON += image2d_int_u8.py + ## ---------------------------- ## ## Swilena Python Shell (sps). ## @@ -103,9 +123,8 @@ include $(top_srcdir)/swilena/run.mk ## FIXME: Do we really need to pass top_srcdir and top_builddir to run? -##TESTS_ENVIRONMENT = \ -## top_srcdir="$(top_srcdir)" top_builddir="$(top_builddir)" $(RUN) -TESTS_ENVIRONMENT = $(RUN) +TESTS_ENVIRONMENT = \ + top_srcdir="$(top_srcdir)" top_builddir="$(top_builddir)" $(RUN) # Ensure `run' is rebuilt before the tests are run. $(TESTS): $(srcdir)/run.stamp # The dependency is on `run.in' and not `run', since `run' is @@ -119,5 +138,5 @@ $(MAKE) $(AM_MAKEFLAGS) $(RUN) @mv -f $@.tmp $@ -TESTS = test.py +TESTS = test.py lena.py EXTRA_DIST += $(TESTS) Index: python/swilena.py --- python/swilena.py (revision 2105) +++ python/swilena.py (working copy) @@ -33,3 +33,4 @@ from dpoint2d import * from window2d import * import image2d_int +import image2d_int_u8 Index: image2d_int_u8.i --- image2d_int_u8.i (revision 0) +++ image2d_int_u8.i (revision 0) @@ -0,0 +1,62 @@ +// -*- C++ -*- +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file image2d.i +/// \brief A simple wrapping of mln::image2d<mln::value::int_u8> along +/// with some algorithms. + +%module image2d_int_u8 + +%import "int_u8.i" +// FIXME: The import directive does not include the `%{ ... %}' clauses. +// %{ +// #include "mln/value/int_u8.hh" +// %} +// +%include "image2d.ixx" +%template(image2d_int_u8) mln::image2d< mln::value::int_u<8> >; + +%include "pgm.ixx" +%template(load) mln::io::pgm::load< mln::value::int_u<8> >; +%template(save) mln::io::pgm::save< mln::image2d< mln::value::int_u<8> > >; + +%include "fill.ixx" +%template(fill) mln::level::fill< mln::image2d< mln::value::int_u<8> > >; + +%include "println.ixx" +%template(println) mln::debug::println< mln::image2d< mln::value::int_u<8> > >; + +%import "window2d.i" +// FIXME: The import directive does not include the `%{ ... %}' clauses. +%{ +#include "mln/core/window2d.hh" +%} + +%include "morpho.ixx" +%template(erosion) mln::morpho::erosion< mln::image2d< mln::value::int_u<8> >, + mln::window2d >; Index: pgm.ixx --- pgm.ixx (revision 0) +++ pgm.ixx (revision 0) @@ -0,0 +1,59 @@ +// -*- C++ -*- +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file pgm.ixx +/// \brief A wrapper of mln::io::pgm::load and mln::io::pgm::save + +%module pgm + +%include std_string.i + +%{ +#include "mln/io/pgm/load.hh" +#include "mln/io/pgm/save.hh" +%} + +// Wrap mln::io::pgm::load(const std::string&) by hand, to force swig +// to choose this overloading. +namespace mln +{ + namespace io + { + namespace pgm + { + + template <typename V> + mln::image2d<V> load(const std::string& filename); + + } // end of namespace mln::io::pgm + + } // end of namespace mln::io + +} // end of namespace mln + +%include "mln/io/pgm/save.hh" Index: int_u8.i --- int_u8.i (revision 0) +++ int_u8.i (revision 0) @@ -0,0 +1,38 @@ +// -*- C++ -*- +// Copyright (C) 2008 EPITA Research and Development Laboratory (LRDE) +// +// This file is part of the Olena Library. This library is free +// software; you can redistribute it and/or modify it under the terms +// of the GNU General Public License version 2 as published by the +// Free Software Foundation. +// +// This library is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +// General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this library; see the file COPYING. If not, write to +// the Free Software Foundation, 51 Franklin Street, Fifth Floor, +// Boston, MA 02111-1307, USA. +// +// As a special exception, you may use this file as part of a free +// software library without restriction. Specifically, if other files +// instantiate templates or use macros or inline functions from this +// file, or you compile this file and link it with other files to +// produce an executable, this file does not by itself cause the +// resulting executable to be covered by the GNU General Public +// License. +// reasons why the executable file might be covered by the GNU General +// Public License. + +/// \file int_u8.i +/// \brief A wrapper of mln::value::int_u8. + +%module int_u8 + +%{ +#include "mln/value/int_u8.hh" +%} + +%include "mln/value/int_u8.hh" Index: fill.ixx --- fill.ixx (revision 2105) +++ fill.ixx (working copy) @@ -26,7 +26,7 @@ // reasons why the executable file might be covered by the GNU General // Public License. -/// \file fill.i +/// \file fill.ixx /// \brief A wrapper of mln::level::fill. %module fill Index: println.ixx --- println.ixx (revision 2105) +++ println.ixx (working copy) @@ -26,7 +26,7 @@ // reasons why the executable file might be covered by the GNU General // Public License. -/// \file println.i +/// \file println.ixx /// \brief A wrapper of mln::debug::println. %{ Index: Makefile.am --- Makefile.am (revision 2105) +++ Makefile.am (working copy) @@ -3,8 +3,10 @@ SUBDIRS = python # Meta-wrappers (templates). -EXTRA_DIST = fill.ixx image2d.ixx intp.ixx morpho.ixx println.ixx +EXTRA_DIST = fill.ixx image2d.ixx intp.ixx morpho.ixx pgm.ixx println.ixx # Wrappers. -EXTRA_DIST += dpoint2d.i image2d_int.i point2d.i window2d.i +EXTRA_DIST += \ + dpoint2d.i image2d_int.i image2d_int_u8.i int_u8.i \ + point2d.i window2d.i check_SCRIPTS = run Index: image2d_int.i --- image2d_int.i (revision 2105) +++ image2d_int.i (working copy) @@ -43,7 +43,7 @@ %template(println) mln::debug::println< mln::image2d<int> >; %import "window2d.i" -// FIXME: The import directive does not import the `%{ ... %}' clauses. +// FIXME: The import directive does not include the `%{ ... %}' clauses. %{ #include "mln/core/window2d.hh" %}

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